{"id":"https://openalex.org/W2110553099","doi":"https://doi.org/10.1093/bioinformatics/btp319","title":"Data structures and compression algorithms for genomic sequence data","display_name":"Data structures and compression algorithms for genomic sequence data","publication_year":2009,"publication_date":"2009-05-15","ids":{"openalex":"https://openalex.org/W2110553099","doi":"https://doi.org/10.1093/bioinformatics/btp319","mag":"2110553099","pmid":"https://pubmed.ncbi.nlm.nih.gov/19447783"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp319","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp319","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/14/1731/603973/btp319.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/14/1731/603973/btp319.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015539035","display_name":"Marty C. Brandon","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Marty C. Brandon","raw_affiliation_strings":["1 Department of Computer Science, 2 Institute for Genomics and Bioinformatics, 3 Center for Molecular and Mitochondrial Medicine and Genetics and 4 Department of Biological Chemistry, UCI, Irvine, CA 92697, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2 Institute for Genomics and Bioinformatics, 3 Center for Molecular and Mitochondrial Medicine and Genetics and 4 Department of Biological Chemistry, UCI, Irvine, CA 92697, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085274471","display_name":"Douglas C. Wallace","orcid":"https://orcid.org/0000-0002-7480-8278"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Douglas C. Wallace","raw_affiliation_strings":["1 Department of Computer Science, 2 Institute for Genomics and Bioinformatics, 3 Center for Molecular and Mitochondrial Medicine and Genetics and 4 Department of Biological Chemistry, UCI, Irvine, CA 92697, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2 Institute for Genomics and Bioinformatics, 3 Center for Molecular and Mitochondrial Medicine and Genetics and 4 Department of Biological Chemistry, UCI, Irvine, CA 92697, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088813478","display_name":"Pierre Baldi","orcid":"https://orcid.org/0000-0001-8752-4664"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pierre Baldi","raw_affiliation_strings":["1 Department of Computer Science, 2 Institute for Genomics and Bioinformatics, 3 Center for Molecular and Mitochondrial Medicine and Genetics and 4 Department of Biological Chemistry, UCI, Irvine, CA 92697, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2 Institute for Genomics and Bioinformatics, 3 Center for Molecular and Mitochondrial Medicine and Genetics and 4 Department of Biological Chemistry, UCI, Irvine, CA 92697, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5015539035"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":13.5498,"has_fulltext":true,"cited_by_count":99,"citation_normalized_percentile":{"value":0.9888722,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"25","issue":"14","first_page":"1731","last_page":"1738"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.655941903591156},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6489735841751099},{"id":"https://openalex.org/keywords/huffman-coding","display_name":"Huffman coding","score":0.6464266180992126},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.6399729251861572},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.5603243112564087},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.4565311670303345},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.45524001121520996},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4319683909416199},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.41277796030044556},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.400117427110672},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25132739543914795},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24052172899246216}],"concepts":[{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.655941903591156},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6489735841751099},{"id":"https://openalex.org/C46900642","wikidata":"https://www.wikidata.org/wiki/Q2647","display_name":"Huffman coding","level":3,"score":0.6464266180992126},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.6399729251861572},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.5603243112564087},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.4565311670303345},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.45524001121520996},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4319683909416199},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.41277796030044556},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.400117427110672},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25132739543914795},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24052172899246216},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp319","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp319","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/14/1731/603973/btp319.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19447783","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19447783","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2705231","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2705231","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp319","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp319","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/14/1731/603973/btp319.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4699999988079071,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G4140464697","display_name":null,"funder_award_id":"AG24373","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4585521352","display_name":null,"funder_award_id":"AG13154","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G719426380","display_name":null,"funder_award_id":"DK73691","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7355214454","display_name":"Acquisition of Cluster and Server for Computational Biology at the University of California, Irvine","funder_award_id":"0321390","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2110553099.pdf","grobid_xml":"https://content.openalex.org/works/W2110553099.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W221187006","https://openalex.org/W788498898","https://openalex.org/W1528514765","https://openalex.org/W1546375972","https://openalex.org/W1559631118","https://openalex.org/W1560200430","https://openalex.org/W1651818244","https://openalex.org/W1965330509","https://openalex.org/W2001725958","https://openalex.org/W2003574027","https://openalex.org/W2010421268","https://openalex.org/W2013221974","https://openalex.org/W2034424993","https://openalex.org/W2058401000","https://openalex.org/W2058422563","https://openalex.org/W2060108852","https://openalex.org/W2065292076","https://openalex.org/W2099111195","https://openalex.org/W2105365626","https://openalex.org/W2107421896","https://openalex.org/W2109291482","https://openalex.org/W2112509895","https://openalex.org/W2113649367","https://openalex.org/W2115613939","https://openalex.org/W2119279196","https://openalex.org/W2122554465","https://openalex.org/W2126829482","https://openalex.org/W2128777897","https://openalex.org/W2129652681","https://openalex.org/W2129795133","https://openalex.org/W2131980582","https://openalex.org/W2142466527","https://openalex.org/W2142642738","https://openalex.org/W2143988400","https://openalex.org/W2145371252","https://openalex.org/W2147492358","https://openalex.org/W2147592920","https://openalex.org/W2797816625","https://openalex.org/W2911940095","https://openalex.org/W4214573638","https://openalex.org/W4242673342","https://openalex.org/W6608737398"],"related_works":["https://openalex.org/W2947180504","https://openalex.org/W2184403636","https://openalex.org/W2911158240","https://openalex.org/W2290273645","https://openalex.org/W4366145473","https://openalex.org/W1561156292","https://openalex.org/W2057717143","https://openalex.org/W4313393809","https://openalex.org/W2035736006","https://openalex.org/W2110553099"],"abstract_inverted_index":{"Data":[0],"are":[1,23],"publicly":[2],"available":[3,24],"from":[4,25],"GenBank,":[5],"the":[6,11],"HapMap":[7],"web":[8],"site,":[9],"and":[10,20],"MITOMAP":[12],"database.":[13],"Supplementary":[14],"materials":[15],"with":[16],"additional":[17],"results,":[18],"statistics,":[19],"software":[21],"implementations":[22],"http://mammag.web.uci.edu/bin/view/Mitowiki/ProjectDNACompression.":[26]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":11},{"year":2012,"cited_by_count":9}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
