{"id":"https://openalex.org/W2126687787","doi":"https://doi.org/10.1093/bioinformatics/btp318","title":"Figure mining for biomedical research","display_name":"Figure mining for biomedical research","publication_year":2009,"publication_date":"2009-05-13","ids":{"openalex":"https://openalex.org/W2126687787","doi":"https://doi.org/10.1093/bioinformatics/btp318","mag":"2126687787","pmid":"https://pubmed.ncbi.nlm.nih.gov/19439564"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp318","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp318","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/16/2082/48993816/bioinformatics_25_16_2082.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/16/2082/48993816/bioinformatics_25_16_2082.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002036038","display_name":"Raul Rodriguez\u2010Esteban","orcid":"https://orcid.org/0000-0002-9494-9609"},"institutions":[{"id":"https://openalex.org/I180857899","display_name":"Pfizer (United States)","ror":"https://ror.org/01xdqrp08","country_code":"US","type":"company","lineage":["https://openalex.org/I180857899"]},{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Raul Rodriguez-Esteban","raw_affiliation_strings":["1 Systems Biology, Pfizer Inc., Cambridge, MA 02139 and 2Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11742, USA"],"affiliations":[{"raw_affiliation_string":"1 Systems Biology, Pfizer Inc., Cambridge, MA 02139 and 2Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11742, USA","institution_ids":["https://openalex.org/I2750212522","https://openalex.org/I180857899"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029181430","display_name":"Ivan Iossifov","orcid":"https://orcid.org/0000-0003-0035-8312"},"institutions":[{"id":"https://openalex.org/I180857899","display_name":"Pfizer (United States)","ror":"https://ror.org/01xdqrp08","country_code":"US","type":"company","lineage":["https://openalex.org/I180857899"]},{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ivan Iossifov","raw_affiliation_strings":["1 Systems Biology, Pfizer Inc., Cambridge, MA 02139 and 2Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11742, USA"],"affiliations":[{"raw_affiliation_string":"1 Systems Biology, Pfizer Inc., Cambridge, MA 02139 and 2Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11742, USA","institution_ids":["https://openalex.org/I2750212522","https://openalex.org/I180857899"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5002036038"],"corresponding_institution_ids":["https://openalex.org/I180857899","https://openalex.org/I2750212522"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.4782,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.81701637,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"25","issue":"16","first_page":"2082","last_page":"2084"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9725000262260437,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9569000005722046,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8086376190185547},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.7594543695449829},{"id":"https://openalex.org/keywords/optical-character-recognition","display_name":"Optical character recognition","score":0.7126694321632385},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.5940883755683899},{"id":"https://openalex.org/keywords/character","display_name":"Character (mathematics)","score":0.5619471669197083},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3897733688354492},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3847764730453491},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.3530482351779938},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.32219600677490234}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8086376190185547},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.7594543695449829},{"id":"https://openalex.org/C546480517","wikidata":"https://www.wikidata.org/wiki/Q167555","display_name":"Optical character recognition","level":3,"score":0.7126694321632385},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.5940883755683899},{"id":"https://openalex.org/C2780861071","wikidata":"https://www.wikidata.org/wiki/Q1062934","display_name":"Character (mathematics)","level":2,"score":0.5619471669197083},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3897733688354492},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3847764730453491},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.3530482351779938},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.32219600677490234},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp318","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp318","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/16/2082/48993816/bioinformatics_25_16_2082.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19439564","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19439564","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repository.cshl.edu:27377","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402288","display_name":"Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp318","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp318","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/16/2082/48993816/bioinformatics_25_16_2082.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2126687787.pdf","grobid_xml":"https://content.openalex.org/works/W2126687787.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W71647219","https://openalex.org/W1495623034","https://openalex.org/W1547701650","https://openalex.org/W1576520375","https://openalex.org/W1583837637","https://openalex.org/W1604938182","https://openalex.org/W1970381857","https://openalex.org/W2016465393","https://openalex.org/W2053724458","https://openalex.org/W2102672399","https://openalex.org/W2123296693","https://openalex.org/W2124973181","https://openalex.org/W2126326837","https://openalex.org/W2128313783","https://openalex.org/W2133525847","https://openalex.org/W2145819879","https://openalex.org/W2158698691","https://openalex.org/W2159482845","https://openalex.org/W2179869759","https://openalex.org/W2561675875","https://openalex.org/W2801356492","https://openalex.org/W4241865841","https://openalex.org/W4253248772","https://openalex.org/W4294216483","https://openalex.org/W6602897713","https://openalex.org/W6632694911","https://openalex.org/W6634442568","https://openalex.org/W6642860979","https://openalex.org/W6678481119","https://openalex.org/W6678652186","https://openalex.org/W6679224428"],"related_works":["https://openalex.org/W2393609567","https://openalex.org/W2369369044","https://openalex.org/W1503216044","https://openalex.org/W2354143083","https://openalex.org/W2372906645","https://openalex.org/W4319998713","https://openalex.org/W2366269494","https://openalex.org/W1991513203","https://openalex.org/W3178467699","https://openalex.org/W2519881370"],"abstract_inverted_index":{"http://iossifovlab.cshl.edu/figurome/.":[0]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":7}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
