{"id":"https://openalex.org/W2161487768","doi":"https://doi.org/10.1093/bioinformatics/btp310","title":"Robust synthetic biology design: stochastic game theory approach","display_name":"Robust synthetic biology design: stochastic game theory approach","publication_year":2009,"publication_date":"2009-05-12","ids":{"openalex":"https://openalex.org/W2161487768","doi":"https://doi.org/10.1093/bioinformatics/btp310","mag":"2161487768","pmid":"https://pubmed.ncbi.nlm.nih.gov/19435742"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp310","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp310","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/14/1822/48992930/bioinformatics_25_14_1822.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/14/1822/48992930/bioinformatics_25_14_1822.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038219293","display_name":"Bor\u2010Sen Chen","orcid":"https://orcid.org/0000-0003-1644-6106"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Bor-Sen Chen","raw_affiliation_strings":["1 Laboratory of Control and Systems Biology, Department of Electrical Engineering, National Tsing Hua University, Hsinchu, 30013 and 2 Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 30068, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Laboratory of Control and Systems Biology, Department of Electrical Engineering, National Tsing Hua University, Hsinchu, 30013 and 2 Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 30068, Taiwan, R.O.C","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113467769","display_name":"Chia-Hung Chang","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chia-Hung Chang","raw_affiliation_strings":["1 Laboratory of Control and Systems Biology, Department of Electrical Engineering, National Tsing Hua University, Hsinchu, 30013 and 2 Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 30068, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Laboratory of Control and Systems Biology, Department of Electrical Engineering, National Tsing Hua University, Hsinchu, 30013 and 2 Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 30068, Taiwan, R.O.C","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017638702","display_name":"Hsiao\u2010Ching Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Hsiao-Ching Lee","raw_affiliation_strings":["1 Laboratory of Control and Systems Biology, Department of Electrical Engineering, National Tsing Hua University, Hsinchu, 30013 and 2 Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 30068, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Laboratory of Control and Systems Biology, Department of Electrical Engineering, National Tsing Hua University, Hsinchu, 30013 and 2 Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 30068, Taiwan, R.O.C","institution_ids":["https://openalex.org/I148366613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.6017,"has_fulltext":true,"cited_by_count":45,"citation_normalized_percentile":{"value":0.90002392,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"25","issue":"14","first_page":"1822","last_page":"1830"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.7794177532196045},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6663241982460022},{"id":"https://openalex.org/keywords/minimax","display_name":"Minimax","score":0.6058397889137268},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5927720069885254},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.5476899147033691},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.48049843311309814},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.47112250328063965},{"id":"https://openalex.org/keywords/matlab","display_name":"MATLAB","score":0.4448438584804535},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21507707238197327},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.20013386011123657},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14079776406288147},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12110432982444763}],"concepts":[{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.7794177532196045},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6663241982460022},{"id":"https://openalex.org/C149728462","wikidata":"https://www.wikidata.org/wiki/Q751319","display_name":"Minimax","level":2,"score":0.6058397889137268},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5927720069885254},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.5476899147033691},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.48049843311309814},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.47112250328063965},{"id":"https://openalex.org/C2780365114","wikidata":"https://www.wikidata.org/wiki/Q169478","display_name":"MATLAB","level":2,"score":0.4448438584804535},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21507707238197327},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.20013386011123657},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14079776406288147},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12110432982444763},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005716","descriptor_name":"Game Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005716","descriptor_name":"Game Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005716","descriptor_name":"Game Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005716","descriptor_name":"Game Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp310","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp310","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/14/1822/48992930/bioinformatics_25_14_1822.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19435742","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19435742","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2705229","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2705229","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp310","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp310","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/14/1822/48992930/bioinformatics_25_14_1822.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2161487768.pdf","grobid_xml":"https://content.openalex.org/works/W2161487768.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W1527417408","https://openalex.org/W1547820487","https://openalex.org/W1578630563","https://openalex.org/W1599969036","https://openalex.org/W1601977376","https://openalex.org/W1676564698","https://openalex.org/W1699920107","https://openalex.org/W1978486653","https://openalex.org/W1988451565","https://openalex.org/W1988702151","https://openalex.org/W1994177537","https://openalex.org/W2006188622","https://openalex.org/W2017496074","https://openalex.org/W2017862866","https://openalex.org/W2020605961","https://openalex.org/W2043004358","https://openalex.org/W2045095831","https://openalex.org/W2047882868","https://openalex.org/W2055093780","https://openalex.org/W2058221907","https://openalex.org/W2069106324","https://openalex.org/W2073936141","https://openalex.org/W2079325629","https://openalex.org/W2083870761","https://openalex.org/W2091731123","https://openalex.org/W2099102792","https://openalex.org/W2102872235","https://openalex.org/W2103931515","https://openalex.org/W2106061002","https://openalex.org/W2108407690","https://openalex.org/W2110071847","https://openalex.org/W2110553053","https://openalex.org/W2111870329","https://openalex.org/W2113890305","https://openalex.org/W2131465376","https://openalex.org/W2134759932","https://openalex.org/W2137510998","https://openalex.org/W2138992053","https://openalex.org/W2144588155","https://openalex.org/W2145372380","https://openalex.org/W2146122494","https://openalex.org/W2148261435","https://openalex.org/W2150989626","https://openalex.org/W2154397483","https://openalex.org/W2163765172","https://openalex.org/W2185337155","https://openalex.org/W2296679604","https://openalex.org/W3210839039","https://openalex.org/W4205597578","https://openalex.org/W4211017114","https://openalex.org/W4239881334","https://openalex.org/W6631579250","https://openalex.org/W6634494593"],"related_works":["https://openalex.org/W2057769265","https://openalex.org/W2024161258","https://openalex.org/W1911418903","https://openalex.org/W2338895903","https://openalex.org/W3044523069","https://openalex.org/W2136248167","https://openalex.org/W2126646394","https://openalex.org/W1987445442","https://openalex.org/W4211049090","https://openalex.org/W2211443823"],"abstract_inverted_index":{"MOTIVATION:":[0],"Synthetic":[1],"biology":[2],"is":[3,27,69,82,121,146,174],"to":[4,9,39,55,62,90,113,124,148,176,182],"engineer":[5],"artificial":[6],"biological":[7,12],"systems":[8],"investigate":[10],"natural":[11],"phenomena":[13],"and":[14,30,43,181,186],"for":[15,84],"a":[16,57,85],"variety":[17],"of":[18,23,45,74,131,188],"applications.":[19],"However,":[20],"the":[21,49,70,92,101,126,141,150,156,163,178,184,189],"development":[22],"synthetic":[24,59,75,87,132,152],"gene":[25,34,60,88,133,153,192],"networks":[26,35,134],"still":[28],"difficult":[29],"most":[31,71],"newly":[32],"created":[33],"are":[36],"non-functioning":[37],"due":[38],"uncertain":[40,67,98],"initial":[41],"conditions":[42],"disturbances":[44],"extra-cellular":[46],"environments":[47],"on":[48],"host":[50],"cell.":[51],"At":[52],"present,":[53],"how":[54],"design":[56,81,108,129,179,193],"robust":[58,79,127,191],"network":[61,89,154],"work":[63],"properly":[64],"under":[65,96],"these":[66,97],"factors":[68,99],"important":[72],"topic":[73],"biology.":[76],"RESULTS:":[77],"A":[78],"regulation":[80,103,107,128],"proposed":[83,147,190],"stochastic":[86,116,137],"achieve":[91],"prescribed":[93],"steady":[94],"states":[95],"from":[100],"minimax":[102,106],"perspective.":[104],"This":[105],"problem":[109,130],"can":[110],"be":[111],"transformed":[112],"an":[114,170],"equivalent":[115],"game":[117,138],"problem.":[118],"Since":[119],"it":[120],"not":[122],"easy":[123],"solve":[125],"by":[135],"non-linear":[136,151],"method":[139],"directly,":[140],"Takagi-Sugeno":[142],"(T-S)":[143],"fuzzy":[144],"model":[145],"approximate":[149],"via":[155],"linear":[157],"matrix":[158],"inequality":[159],"(LMI)":[160],"technique":[161],"through":[162],"Robust":[164],"Control":[165],"Toolbox":[166],"in":[167,171],"Matlab.":[168],"Finally,":[169],"silico":[172],"example":[173],"given":[175],"illustrate":[177],"procedure":[180],"confirm":[183],"efficiency":[185],"efficacy":[187],"method.":[194],"AVAILABILITY:":[195],"http://www.ee.nthu.edu.tw/bschen/SyntheticBioDesign_supplement.pdf.":[196]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":4}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
