{"id":"https://openalex.org/W2150429594","doi":"https://doi.org/10.1093/bioinformatics/btp290","title":"A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide","display_name":"A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide","publication_year":2009,"publication_date":"2009-05-15","ids":{"openalex":"https://openalex.org/W2150429594","doi":"https://doi.org/10.1093/bioinformatics/btp290","mag":"2150429594","pmid":"https://pubmed.ncbi.nlm.nih.gov/19447786"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp290","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp290","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/13/1694/16888282/btp290.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/13/1694/16888282/btp290.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006115537","display_name":"Jonathan D. Wren","orcid":"https://orcid.org/0000-0003-2776-3545"},"institutions":[{"id":"https://openalex.org/I27253931","display_name":"Oklahoma City University","ror":"https://ror.org/02bs0cv29","country_code":"US","type":"education","lineage":["https://openalex.org/I27253931"]},{"id":"https://openalex.org/I30558944","display_name":"Oklahoma Medical Research Foundation","ror":"https://ror.org/035z6xf33","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I30558944"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jonathan D. Wren","raw_affiliation_strings":["Arthritis and Immunology Research Program, Oklahoma Medical Research Foundation;, 825 N.E. 13th Street, Oklahoma City, Oklahoma OK 73104-5005, USA",", 825 N.E. 13th Street, Oklahoma City, Oklahoma OK 73104-5005, USA"],"affiliations":[{"raw_affiliation_string":"Arthritis and Immunology Research Program, Oklahoma Medical Research Foundation;, 825 N.E. 13th Street, Oklahoma City, Oklahoma OK 73104-5005, USA","institution_ids":["https://openalex.org/I30558944"]},{"raw_affiliation_string":", 825 N.E. 13th Street, Oklahoma City, Oklahoma OK 73104-5005, USA","institution_ids":["https://openalex.org/I27253931"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5006115537"],"corresponding_institution_ids":["https://openalex.org/I27253931","https://openalex.org/I30558944"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.4483,"has_fulltext":true,"cited_by_count":97,"citation_normalized_percentile":{"value":0.95401217,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"25","issue":"13","first_page":"1694","last_page":"1701"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9684000015258789,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.7521958947181702},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.648979902267456},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5784242153167725},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5570298433303833},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.5533040165901184},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5391182899475098},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5335491299629211},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.5214273929595947},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5017831325531006},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.467495322227478},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.4552352726459503},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.43192508816719055},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.30082201957702637},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.1590135097503662}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.7521958947181702},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.648979902267456},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5784242153167725},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5570298433303833},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.5533040165901184},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5391182899475098},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5335491299629211},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.5214273929595947},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5017831325531006},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.467495322227478},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.4552352726459503},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.43192508816719055},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.30082201957702637},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.1590135097503662},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp290","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp290","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/13/1694/16888282/btp290.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19447786","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19447786","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2732319","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2732319","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp290","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp290","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/13/1694/16888282/btp290.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8702750348","display_name":null,"funder_award_id":"RR020143","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2150429594.pdf","grobid_xml":"https://content.openalex.org/works/W2150429594.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W90158706","https://openalex.org/W1502421007","https://openalex.org/W1528493411","https://openalex.org/W1551744077","https://openalex.org/W1559772652","https://openalex.org/W1670599640","https://openalex.org/W1974206898","https://openalex.org/W1983923347","https://openalex.org/W2002065650","https://openalex.org/W2003344646","https://openalex.org/W2025832553","https://openalex.org/W2034784092","https://openalex.org/W2038721869","https://openalex.org/W2048061807","https://openalex.org/W2049644955","https://openalex.org/W2055247169","https://openalex.org/W2060205066","https://openalex.org/W2060705109","https://openalex.org/W2063661220","https://openalex.org/W2074092657","https://openalex.org/W2089000384","https://openalex.org/W2096037842","https://openalex.org/W2097948691","https://openalex.org/W2099668895","https://openalex.org/W2101448157","https://openalex.org/W2101859647","https://openalex.org/W2103453943","https://openalex.org/W2108331169","https://openalex.org/W2112609377","https://openalex.org/W2113128520","https://openalex.org/W2115233298","https://openalex.org/W2117805756","https://openalex.org/W2120517678","https://openalex.org/W2120886934","https://openalex.org/W2124201592","https://openalex.org/W2124373444","https://openalex.org/W2127563440","https://openalex.org/W2128951478","https://openalex.org/W2130748131","https://openalex.org/W2133566806","https://openalex.org/W2134092038","https://openalex.org/W2139845570","https://openalex.org/W2141146725","https://openalex.org/W2144055687","https://openalex.org/W2150001158","https://openalex.org/W2150375898","https://openalex.org/W2150926065","https://openalex.org/W2151820055","https://openalex.org/W2152274187","https://openalex.org/W2154362705","https://openalex.org/W2156782835","https://openalex.org/W2158940923","https://openalex.org/W2161409973","https://openalex.org/W2162142896","https://openalex.org/W2164242630","https://openalex.org/W2168909179","https://openalex.org/W2413298887","https://openalex.org/W2950225692","https://openalex.org/W4205298449","https://openalex.org/W6674978573","https://openalex.org/W6675457949","https://openalex.org/W6677712588","https://openalex.org/W6682449849","https://openalex.org/W6683356575"],"related_works":["https://openalex.org/W2041540252","https://openalex.org/W2138580185","https://openalex.org/W2796636403","https://openalex.org/W2415545834","https://openalex.org/W3203113381","https://openalex.org/W170658859","https://openalex.org/W1483316219","https://openalex.org/W4310366902","https://openalex.org/W3023720143","https://openalex.org/W2490137852"],"abstract_inverted_index":{"Data":[0],"matrix":[1],"available":[2],"upon":[3],"request.":[4]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":6}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
