{"id":"https://openalex.org/W2134491728","doi":"https://doi.org/10.1093/bioinformatics/btp278","title":"KIRMES: kernel-based identification of regulatory modules in euchromatic sequences","display_name":"KIRMES: kernel-based identification of regulatory modules in euchromatic sequences","publication_year":2009,"publication_date":"2009-04-23","ids":{"openalex":"https://openalex.org/W2134491728","doi":"https://doi.org/10.1093/bioinformatics/btp278","mag":"2134491728","pmid":"https://pubmed.ncbi.nlm.nih.gov/19389732"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp278","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp278","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/16/2126/16888219/btp278.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/16/2126/16888219/btp278.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000233990","display_name":"Sebastian J. Schulthei\u00df","orcid":"https://orcid.org/0000-0001-8488-906X"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210147862","display_name":"Friedrich Miescher Laboratory","ror":"https://ror.org/04vh1tq58","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Sebastian J. Schultheiss","raw_affiliation_strings":["1 Friedrich Miescher Laboratory of the Max Planck Society, and 2Max Planck Institute for Developmental Biology, T\u00fcbingen, 3Department of Stem Cell Biology, University of Heidelberg and 4Wilhelm Schickard Institute for Computer Science, University of T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"1 Friedrich Miescher Laboratory of the Max Planck Society, and 2Max Planck Institute for Developmental Biology, T\u00fcbingen, 3Department of Stem Cell Biology, University of Heidelberg and 4Wilhelm Schickard Institute for Computer Science, University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210147862","https://openalex.org/I8087733","https://openalex.org/I4210112458","https://openalex.org/I149899117","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082151650","display_name":"Wolfgang Busch","orcid":"https://orcid.org/0000-0003-2042-7290"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210147862","display_name":"Friedrich Miescher Laboratory","ror":"https://ror.org/04vh1tq58","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wolfgang Busch","raw_affiliation_strings":["1 Friedrich Miescher Laboratory of the Max Planck Society, and 2Max Planck Institute for Developmental Biology, T\u00fcbingen, 3Department of Stem Cell Biology, University of Heidelberg and 4Wilhelm Schickard Institute for Computer Science, University of T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"1 Friedrich Miescher Laboratory of the Max Planck Society, and 2Max Planck Institute for Developmental Biology, T\u00fcbingen, 3Department of Stem Cell Biology, University of Heidelberg and 4Wilhelm Schickard Institute for Computer Science, University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210147862","https://openalex.org/I8087733","https://openalex.org/I4210112458","https://openalex.org/I149899117","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065075536","display_name":"Jan U. Lohmann","orcid":"https://orcid.org/0000-0003-3667-187X"},"institutions":[{"id":"https://openalex.org/I4210147862","display_name":"Friedrich Miescher Laboratory","ror":"https://ror.org/04vh1tq58","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]},{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jan U. Lohmann","raw_affiliation_strings":["1 Friedrich Miescher Laboratory of the Max Planck Society, and 2Max Planck Institute for Developmental Biology, T\u00fcbingen, 3Department of Stem Cell Biology, University of Heidelberg and 4Wilhelm Schickard Institute for Computer Science, University of T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"1 Friedrich Miescher Laboratory of the Max Planck Society, and 2Max Planck Institute for Developmental Biology, T\u00fcbingen, 3Department of Stem Cell Biology, University of Heidelberg and 4Wilhelm Schickard Institute for Computer Science, University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210147862","https://openalex.org/I8087733","https://openalex.org/I4210112458","https://openalex.org/I149899117","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053621010","display_name":"Oliver Kohlbacher","orcid":"https://orcid.org/0000-0003-1739-4598"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]},{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210147862","display_name":"Friedrich Miescher Laboratory","ror":"https://ror.org/04vh1tq58","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Oliver Kohlbacher","raw_affiliation_strings":["1 Friedrich Miescher Laboratory of the Max Planck Society, and 2Max Planck Institute for Developmental Biology, T\u00fcbingen, 3Department of Stem Cell Biology, University of Heidelberg and 4Wilhelm Schickard Institute for Computer Science, University of T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"1 Friedrich Miescher Laboratory of the Max Planck Society, and 2Max Planck Institute for Developmental Biology, T\u00fcbingen, 3Department of Stem Cell Biology, University of Heidelberg and 4Wilhelm Schickard Institute for Computer Science, University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210147862","https://openalex.org/I8087733","https://openalex.org/I4210112458","https://openalex.org/I149899117","https://openalex.org/I223822909"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035416263","display_name":"Gunnar R\u00e4tsch","orcid":"https://orcid.org/0000-0001-5486-8532"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I4210147862","display_name":"Friedrich Miescher Laboratory","ror":"https://ror.org/04vh1tq58","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210147862"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gunnar R\u00e4tsch","raw_affiliation_strings":["1 Friedrich Miescher Laboratory of the Max Planck Society, and 2Max Planck Institute for Developmental Biology, T\u00fcbingen, 3Department of Stem Cell Biology, University of Heidelberg and 4Wilhelm Schickard Institute for Computer Science, University of T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"1 Friedrich Miescher Laboratory of the Max Planck Society, and 2Max Planck Institute for Developmental Biology, T\u00fcbingen, 3Department of Stem Cell Biology, University of Heidelberg and 4Wilhelm Schickard Institute for Computer Science, University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210147862","https://openalex.org/I8087733","https://openalex.org/I4210112458","https://openalex.org/I149899117","https://openalex.org/I223822909"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5000233990"],"corresponding_institution_ids":["https://openalex.org/I149899117","https://openalex.org/I223822909","https://openalex.org/I4210112458","https://openalex.org/I4210147862","https://openalex.org/I8087733"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.4782,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.81742628,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"25","issue":"16","first_page":"2126","last_page":"2133"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6390669345855713},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5843997001647949},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5746612548828125},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.5417460203170776},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.47404882311820984},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4236156642436981},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38126254081726074},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3204403519630432},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.294992059469223},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2310953140258789},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.11375287175178528}],"concepts":[{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6390669345855713},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5843997001647949},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5746612548828125},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.5417460203170776},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.47404882311820984},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4236156642436981},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38126254081726074},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3204403519630432},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.294992059469223},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2310953140258789},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.11375287175178528},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D022041","descriptor_name":"Euchromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022041","descriptor_name":"Euchromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022041","descriptor_name":"Euchromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btp278","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp278","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/16/2126/16888219/btp278.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19389732","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19389732","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:edoc.mpg.de:453082","is_oa":false,"landing_page_url":"http://edoc.mpg.de/453082","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, v.25, 2126-2133 (2009)","raw_type":"Article"},{"id":"pmh:oai:edoc.mpg.de:460667","is_oa":false,"landing_page_url":"http://edoc.mpg.de/460667","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, v.25, 2126-2133 (2009)","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2722996","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2722996","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp278","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp278","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/16/2126/16888219/btp278.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322434","display_name":"Max-Planck-Gesellschaft","ror":"https://ror.org/01hhn8329"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2134491728.pdf","grobid_xml":"https://content.openalex.org/works/W2134491728.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1542652324","https://openalex.org/W1560724230","https://openalex.org/W1564588886","https://openalex.org/W1576520375","https://openalex.org/W1592870802","https://openalex.org/W1604938182","https://openalex.org/W1964940342","https://openalex.org/W1970351139","https://openalex.org/W1980911747","https://openalex.org/W1982335518","https://openalex.org/W1989039494","https://openalex.org/W1998300401","https://openalex.org/W2012597404","https://openalex.org/W2020816856","https://openalex.org/W2027582332","https://openalex.org/W2039286232","https://openalex.org/W2041877620","https://openalex.org/W2050284387","https://openalex.org/W2063861171","https://openalex.org/W2074703985","https://openalex.org/W2080498142","https://openalex.org/W2084620487","https://openalex.org/W2087347434","https://openalex.org/W2097936772","https://openalex.org/W2099401974","https://openalex.org/W2105781815","https://openalex.org/W2106004801","https://openalex.org/W2108995755","https://openalex.org/W2109261267","https://openalex.org/W2111765516","https://openalex.org/W2114281975","https://openalex.org/W2115555186","https://openalex.org/W2149769193","https://openalex.org/W2154462399","https://openalex.org/W2161645441","https://openalex.org/W2166898290","https://openalex.org/W2167865654","https://openalex.org/W2170960297","https://openalex.org/W2171896402","https://openalex.org/W2533703023","https://openalex.org/W2539868084","https://openalex.org/W3023786531","https://openalex.org/W3195149063","https://openalex.org/W6634442568","https://openalex.org/W6635200387","https://openalex.org/W6655478935","https://openalex.org/W6683181193"],"related_works":["https://openalex.org/W2156564520","https://openalex.org/W4307843054","https://openalex.org/W2104570606","https://openalex.org/W4210430020","https://openalex.org/W4250611210","https://openalex.org/W2112118427","https://openalex.org/W4205247356","https://openalex.org/W2464717012","https://openalex.org/W2565027272","https://openalex.org/W4248160505"],"abstract_inverted_index":{"The":[0],"python":[1],"source":[2],"code":[3],"(open":[4],"source-licensed":[5],"under":[6],"GPL),":[7],"the":[8,11],"data":[9],"for":[10],"experiments":[12],"and":[13],"a":[14],"Galaxy-based":[15],"web":[16],"service":[17],"are":[18],"available":[19],"at":[20],"http://www.fml.mpg.de/raetsch/suppl/kirmes/.":[21]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}