{"id":"https://openalex.org/W2140277449","doi":"https://doi.org/10.1093/bioinformatics/btp277","title":"Literature-based priors for gene regulatory networks","display_name":"Literature-based priors for gene regulatory networks","publication_year":2009,"publication_date":"2009-04-23","ids":{"openalex":"https://openalex.org/W2140277449","doi":"https://doi.org/10.1093/bioinformatics/btp277","mag":"2140277449","pmid":"https://pubmed.ncbi.nlm.nih.gov/19389730"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp277","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp277","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/14/1768/48993360/bioinformatics_25_14_1768.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/14/1768/48993360/bioinformatics_25_14_1768.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004730348","display_name":"Emma Steele","orcid":null},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]},{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686"]},{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB","NL"],"is_corresponding":true,"raw_author_name":"E. Steele","raw_affiliation_strings":["1 Centre for Intelligent Data Analysis, School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge UB8 3PH, UK and 2 Biosemantics Association, a collaboration between the Department of Human Genetics from the Leiden University Medical Center, Leiden and Department of Medical Informatics from the Erasmus University Medical Center, Rotterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centre for Intelligent Data Analysis, School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge UB8 3PH, UK and 2 Biosemantics Association, a collaboration between the Department of Human Genetics from the Leiden University Medical Center, Leiden and Department of Medical Informatics from the Erasmus University Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2800006345","https://openalex.org/I2801952686","https://openalex.org/I59433898"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004397914","display_name":"Allan Tucker","orcid":"https://orcid.org/0000-0001-5105-3506"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]},{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686"]},{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB","NL"],"is_corresponding":false,"raw_author_name":"A. Tucker","raw_affiliation_strings":["1 Centre for Intelligent Data Analysis, School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge UB8 3PH, UK and 2 Biosemantics Association, a collaboration between the Department of Human Genetics from the Leiden University Medical Center, Leiden and Department of Medical Informatics from the Erasmus University Medical Center, Rotterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centre for Intelligent Data Analysis, School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge UB8 3PH, UK and 2 Biosemantics Association, a collaboration between the Department of Human Genetics from the Leiden University Medical Center, Leiden and Department of Medical Informatics from the Erasmus University Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2800006345","https://openalex.org/I2801952686","https://openalex.org/I59433898"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021033668","display_name":"Peter A.C. \u2019t Hoen","orcid":"https://orcid.org/0000-0003-4450-3112"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]},{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686"]},{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB","NL"],"is_corresponding":false,"raw_author_name":"P.A.C. 't Hoen","raw_affiliation_strings":["1 Centre for Intelligent Data Analysis, School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge UB8 3PH, UK and 2 Biosemantics Association, a collaboration between the Department of Human Genetics from the Leiden University Medical Center, Leiden and Department of Medical Informatics from the Erasmus University Medical Center, Rotterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centre for Intelligent Data Analysis, School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge UB8 3PH, UK and 2 Biosemantics Association, a collaboration between the Department of Human Genetics from the Leiden University Medical Center, Leiden and Department of Medical Informatics from the Erasmus University Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2800006345","https://openalex.org/I2801952686","https://openalex.org/I59433898"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077586396","display_name":"Martijn J. Schuemie","orcid":"https://orcid.org/0000-0002-0817-5361"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]},{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686"]},{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB","NL"],"is_corresponding":false,"raw_author_name":"M.J. Schuemie","raw_affiliation_strings":["1 Centre for Intelligent Data Analysis, School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge UB8 3PH, UK and 2 Biosemantics Association, a collaboration between the Department of Human Genetics from the Leiden University Medical Center, Leiden and Department of Medical Informatics from the Erasmus University Medical Center, Rotterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centre for Intelligent Data Analysis, School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge UB8 3PH, UK and 2 Biosemantics Association, a collaboration between the Department of Human Genetics from the Leiden University Medical Center, Leiden and Department of Medical Informatics from the Erasmus University Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2800006345","https://openalex.org/I2801952686","https://openalex.org/I59433898"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5004730348"],"corresponding_institution_ids":["https://openalex.org/I2800006345","https://openalex.org/I2801952686","https://openalex.org/I59433898"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.1403,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.87428732,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"25","issue":"14","first_page":"1768","last_page":"1774"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.4138000011444092,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.4138000011444092,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.24160000681877136,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11303","display_name":"Bayesian Modeling and Causal Inference","score":0.2240999937057495,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/prior-probability","display_name":"Prior probability","score":0.7975010871887207},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6548115015029907},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6478847861289978},{"id":"https://openalex.org/keywords/novelty","display_name":"Novelty","score":0.6241412162780762},{"id":"https://openalex.org/keywords/bayesian-network","display_name":"Bayesian network","score":0.5145537257194519},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4738101065158844},{"id":"https://openalex.org/keywords/weighting","display_name":"Weighting","score":0.47300463914871216},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4703531265258789},{"id":"https://openalex.org/keywords/bayes-theorem","display_name":"Bayes' theorem","score":0.4467929005622864},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.44072312116622925},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.43097299337387085},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.407744437456131},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.36256182193756104},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35441213846206665},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21506470441818237},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1656336784362793},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.16449391841888428}],"concepts":[{"id":"https://openalex.org/C177769412","wikidata":"https://www.wikidata.org/wiki/Q278090","display_name":"Prior probability","level":3,"score":0.7975010871887207},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6548115015029907},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6478847861289978},{"id":"https://openalex.org/C2778738651","wikidata":"https://www.wikidata.org/wiki/Q16546687","display_name":"Novelty","level":2,"score":0.6241412162780762},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.5145537257194519},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4738101065158844},{"id":"https://openalex.org/C183115368","wikidata":"https://www.wikidata.org/wiki/Q856577","display_name":"Weighting","level":2,"score":0.47300463914871216},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4703531265258789},{"id":"https://openalex.org/C207201462","wikidata":"https://www.wikidata.org/wiki/Q182505","display_name":"Bayes' theorem","level":3,"score":0.4467929005622864},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.44072312116622925},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.43097299337387085},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.407744437456131},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.36256182193756104},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35441213846206665},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21506470441818237},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1656336784362793},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.16449391841888428},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.0},{"id":"https://openalex.org/C27206212","wikidata":"https://www.wikidata.org/wiki/Q34178","display_name":"Theology","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1093/bioinformatics/btp277","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp277","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/14/1768/48993360/bioinformatics_25_14_1768.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19389730","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19389730","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.eur.nl:publications/66fa0d81-05bd-4310-b4d6-302a5196fe21","is_oa":false,"landing_page_url":"https://pure.eur.nl/en/publications/66fa0d81-05bd-4310-b4d6-302a5196fe21","pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Steele, E, Tucker, A, 't Hoen, PAC & Schuemie, M 2009, 'Literature-based priors for gene regulatory networks', Bioinformatics, vol. 25, no. 14, pp. 1768-1774. https://doi.org/10.1093/bioinformatics/btp277","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1006.8927","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1006.8927","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2009/04/23/bioinformatics.btp277.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.427.2026","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.427.2026","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bura.brunel.ac.uk/bitstream/2438/3271/3/Fulltext.pdf","raw_type":"text"},{"id":"pmh:oai:bura.brunel.ac.uk:2438/10124","is_oa":false,"landing_page_url":"http://bura.brunel.ac.uk/handle/2438/10124","pdf_url":null,"source":{"id":"https://openalex.org/S4306401473","display_name":"Brunel University Research Archive (BURA) (Brunel University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I59433898","host_organization_name":"Brunel University of London","host_organization_lineage":["https://openalex.org/I59433898"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:bura.brunel.ac.uk:2438/3271","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/papbyrecent.dtl","pdf_url":null,"source":{"id":"https://openalex.org/S4306401473","display_name":"Brunel University Research Archive (BURA) (Brunel University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I59433898","host_organization_name":"Brunel University of London","host_organization_lineage":["https://openalex.org/I59433898"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Research Paper"},{"id":"pmh:oai:pure.eur.nl:openaire_cris_publications/66fa0d81-05bd-4310-b4d6-302a5196fe21","is_oa":false,"landing_page_url":"http://hdl.handle.net/1765/55714","pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Steele, E, Tucker, A, 't Hoen, PAC & Schuemie, M 2009, 'Literature-based priors for gene regulatory networks', Bioinformatics, vol. 25, no. 14, pp. 1768-1774. https://doi.org/10.1093/bioinformatics/btp277","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp277","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp277","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/14/1768/48993360/bioinformatics_25_14_1768.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1590398161","https://openalex.org/W1626295059","https://openalex.org/W1739940154","https://openalex.org/W1837652160","https://openalex.org/W1967411964","https://openalex.org/W1978304080","https://openalex.org/W1981307375","https://openalex.org/W1987079970","https://openalex.org/W1989371635","https://openalex.org/W1990987722","https://openalex.org/W1995945562","https://openalex.org/W2000903198","https://openalex.org/W2006145698","https://openalex.org/W2010637767","https://openalex.org/W2025803032","https://openalex.org/W2044525257","https://openalex.org/W2064802889","https://openalex.org/W2069799701","https://openalex.org/W2083079645","https://openalex.org/W2099794271","https://openalex.org/W2103014023","https://openalex.org/W2103453943","https://openalex.org/W2127053639","https://openalex.org/W2128298129","https://openalex.org/W2132561013","https://openalex.org/W2137883630","https://openalex.org/W2141842620","https://openalex.org/W2146856779","https://openalex.org/W2152205088","https://openalex.org/W2153961603","https://openalex.org/W2153999032","https://openalex.org/W2159080219","https://openalex.org/W2170524079","https://openalex.org/W2318485605","https://openalex.org/W2522519459","https://openalex.org/W2611370172","https://openalex.org/W2798149936","https://openalex.org/W2974701791","https://openalex.org/W3106889297","https://openalex.org/W3143521561","https://openalex.org/W6634970726","https://openalex.org/W6635196568","https://openalex.org/W6636664571","https://openalex.org/W6647732023","https://openalex.org/W6668119305","https://openalex.org/W6682931848","https://openalex.org/W6727304459"],"related_works":["https://openalex.org/W2381242807","https://openalex.org/W2751208925","https://openalex.org/W3126131230","https://openalex.org/W2347541121","https://openalex.org/W4288804799","https://openalex.org/W2080951048","https://openalex.org/W2343819364","https://openalex.org/W2133205540","https://openalex.org/W2046798682","https://openalex.org/W2349909726"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,65],"use":[2,73],"of":[3,28,37,44,67,74,96,107,149,153,168,179],"prior":[4,29,57,128,155],"knowledge":[5,30,58],"to":[6,119,126,133,187],"improve":[7,164],"gene":[8,38,123,135],"regulatory":[9,170],"network":[10,35,127,175,189],"modelling":[11],"has":[12],"often":[13],"been":[14,53],"proposed.":[15],"In":[16],"this":[17],"article":[18],"we":[19],"present":[20,116,172],"the":[21,25,41,72,80,83,87,100,147,151,154,166,174,177],"first":[22],"research":[23],"on":[24,183],"massive":[26],"incorporation":[27],"from":[31,92,192],"literature":[32],"for":[33,137],"Bayesian":[34],"learning":[36],"networks.":[39],"As":[40],"publication":[42],"rate":[43],"scientific":[45,97],"papers":[46],"grows,":[47],"updating":[48],"online":[49],"databases,":[50],"which":[51,86],"have":[52],"proposed":[54],"as":[55],"potential":[56],"in":[59,71,82,85,103,173,185],"past":[60],"research,":[61],"becomes":[62],"increasingly":[63],"challenging.":[64],"novelty":[66],"our":[68],"approach":[69],"lies":[70],"gene-pair":[75],"association":[76,124],"scores":[77,125],"that":[78,160,208],"describe":[79],"overlap":[81],"contexts":[84],"genes":[88],"are":[89],"mentioned,":[90],"generated":[91],"a":[93,104,110,117,188],"large":[94],"database":[95],"literature,":[98],"harnessing":[99],"information":[101],"contained":[102],"huge":[105],"number":[106,167],"documents":[108],"into":[109],"simple,":[111],"clear":[112],"format.":[113],"RESULTS:":[114],"We":[115,144],"method":[118],"transform":[120],"such":[121],"literature-based":[122,161],"probabilities,":[129],"and":[130,141,176],"apply":[131],"it":[132],"learn":[134],"sub-networks":[136],"yeast,":[138],"Escherichia":[139],"coli":[140],"Human":[142],"organisms.":[143],"also":[145,199],"investigate":[146],"effect":[148],"weighting":[150],"influence":[152],"knowledge.":[156],"Our":[157],"findings":[158],"show":[159,200],"priors":[162,198],"can":[163],"both":[165],"true":[169],"interactions":[171],"accuracy":[178],"expression":[180,193],"value":[181],"prediction":[182],"genes,":[184],"comparison":[186],"learnt":[190,196],"solely":[191],"data.":[194],"Networks":[195],"with":[197,205,210],"an":[201],"improved":[202],"biological":[203,212],"interpretation,":[204],"identified":[206],"subnetworks":[207],"coincide":[209],"known":[211],"pathways.":[213]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
