{"id":"https://openalex.org/W2148086783","doi":"https://doi.org/10.1093/bioinformatics/btp267","title":"On the inference of spatial structure from population genetics data","display_name":"On the inference of spatial structure from population genetics data","publication_year":2009,"publication_date":"2009-07-02","ids":{"openalex":"https://openalex.org/W2148086783","doi":"https://doi.org/10.1093/bioinformatics/btp267","mag":"2148086783","pmid":"https://pubmed.ncbi.nlm.nih.gov/19574291"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp267","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp267","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/14/1796/48992665/bioinformatics_25_14_1796.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/14/1796/48992665/bioinformatics_25_14_1796.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020289450","display_name":"G. Guillot","orcid":"https://orcid.org/0000-0003-0675-8325"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I22248866","display_name":"AgroParisTech","ror":"https://ror.org/02kbmgc12","country_code":"FR","type":"education","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I66862912","display_name":"Chalmers University of Technology","ror":"https://ror.org/040wg7k59","country_code":"SE","type":"education","lineage":["https://openalex.org/I66862912"]}],"countries":["FR","NO","SE"],"is_corresponding":true,"raw_author_name":"Gilles Guillot","raw_affiliation_strings":["1 Centre for Ecological and Evolutionary Synthesis, Department of Biology, University of Oslo, P.O. Box 1066, Blindern 0316, Oslo Norway, 2 Gothenburg Stochastic Centre, Department of Mathematical Sciences, Chalmers University of Technology, Gothenburg, Sweden and 3 Department of Applied Mathematics and Computer Science, INRA/Agro-ParisTech, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Centre for Ecological and Evolutionary Synthesis, Department of Biology, University of Oslo, P.O. Box 1066, Blindern 0316, Oslo Norway, 2 Gothenburg Stochastic Centre, Department of Mathematical Sciences, Chalmers University of Technology, Gothenburg, Sweden and 3 Department of Applied Mathematics and Computer Science, INRA/Agro-ParisTech, Paris, France","institution_ids":["https://openalex.org/I22248866","https://openalex.org/I66862912","https://openalex.org/I184942183"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5020289450"],"corresponding_institution_ids":["https://openalex.org/I184942183","https://openalex.org/I22248866","https://openalex.org/I66862912"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.6078,"has_fulltext":true,"cited_by_count":40,"citation_normalized_percentile":{"value":0.93429434,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"25","issue":"14","first_page":"1796","last_page":"1801"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.8644999861717224,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.8644999861717224,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.03579999879002571,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.01889999955892563,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spurious-relationship","display_name":"Spurious relationship","score":0.7646584510803223},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6476138830184937},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5956903100013733},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.511272668838501},{"id":"https://openalex.org/keywords/isolation-by-distance","display_name":"Isolation by distance","score":0.4761388599872589},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4715706706047058},{"id":"https://openalex.org/keywords/approximate-bayesian-computation","display_name":"Approximate Bayesian computation","score":0.4500305652618408},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38051456212997437},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3524061441421509},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29077374935150146},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2825589179992676},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.25200799107551575},{"id":"https://openalex.org/keywords/genetic-structure","display_name":"Genetic structure","score":0.21437886357307434}],"concepts":[{"id":"https://openalex.org/C97256817","wikidata":"https://www.wikidata.org/wiki/Q1462316","display_name":"Spurious relationship","level":2,"score":0.7646584510803223},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6476138830184937},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5956903100013733},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.511272668838501},{"id":"https://openalex.org/C2777706067","wikidata":"https://www.wikidata.org/wiki/Q16947412","display_name":"Isolation by distance","level":5,"score":0.4761388599872589},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4715706706047058},{"id":"https://openalex.org/C2779377595","wikidata":"https://www.wikidata.org/wiki/Q21045424","display_name":"Approximate Bayesian computation","level":3,"score":0.4500305652618408},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38051456212997437},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3524061441421509},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29077374935150146},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2825589179992676},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.25200799107551575},{"id":"https://openalex.org/C46576788","wikidata":"https://www.wikidata.org/wiki/Q5532925","display_name":"Genetic structure","level":4,"score":0.21437886357307434},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btp267","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp267","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/14/1796/48992665/bioinformatics_25_14_1796.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19574291","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19574291","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:publications.lib.chalmers.se:115532","is_oa":false,"landing_page_url":"http://publications.lib.chalmers.se/publication/115532-on-the-inference-of-spatial-structure-from-population-genetics-data","pdf_url":null,"source":{"id":"https://openalex.org/S4377196470","display_name":"Chalmers Publication Library (Chalmers University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66862912","host_organization_name":"Chalmers University of Technology","host_organization_lineage":["https://openalex.org/I66862912"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text.Article.Journal.PeerReviewed"},{"id":"pmh:oai:research.chalmers.se:115532","is_oa":false,"landing_page_url":"https://research.chalmers.se/en/publication/115532","pdf_url":null,"source":{"id":"https://openalex.org/S4306402469","display_name":"Chalmers Research (Chalmers University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66862912","host_organization_name":"Chalmers University of Technology","host_organization_lineage":["https://openalex.org/I66862912"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp267","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp267","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/14/1796/48992665/bioinformatics_25_14_1796.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.4099999964237213}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2148086783.pdf","grobid_xml":"https://content.openalex.org/works/W2148086783.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W131003407","https://openalex.org/W1504702575","https://openalex.org/W1511747216","https://openalex.org/W1569980211","https://openalex.org/W1602551265","https://openalex.org/W1882056569","https://openalex.org/W1939346899","https://openalex.org/W1965987472","https://openalex.org/W1969534387","https://openalex.org/W1974611538","https://openalex.org/W1984358340","https://openalex.org/W1985093013","https://openalex.org/W1991385580","https://openalex.org/W1997476591","https://openalex.org/W2004299078","https://openalex.org/W2007354430","https://openalex.org/W2008147924","https://openalex.org/W2013164703","https://openalex.org/W2015642634","https://openalex.org/W2018826821","https://openalex.org/W2034045456","https://openalex.org/W2037096907","https://openalex.org/W2038885294","https://openalex.org/W2041358082","https://openalex.org/W2047417387","https://openalex.org/W2054287017","https://openalex.org/W2058292583","https://openalex.org/W2065222687","https://openalex.org/W2070335941","https://openalex.org/W2079817125","https://openalex.org/W2089950018","https://openalex.org/W2096878708","https://openalex.org/W2098126593","https://openalex.org/W2101995165","https://openalex.org/W2103374627","https://openalex.org/W2106706098","https://openalex.org/W2110156265","https://openalex.org/W2110733154","https://openalex.org/W2113662295","https://openalex.org/W2120962599","https://openalex.org/W2121504310","https://openalex.org/W2125280835","https://openalex.org/W2133148918","https://openalex.org/W2141567528","https://openalex.org/W2145574927","https://openalex.org/W2148255060","https://openalex.org/W2168695316","https://openalex.org/W2169294950","https://openalex.org/W2169582097","https://openalex.org/W2323517320","https://openalex.org/W4231311503","https://openalex.org/W4292691288","https://openalex.org/W6676839416","https://openalex.org/W6684644510","https://openalex.org/W6701026114","https://openalex.org/W6813131194"],"related_works":["https://openalex.org/W2162899405","https://openalex.org/W3113091479","https://openalex.org/W941090075","https://openalex.org/W2044987316","https://openalex.org/W3134374554","https://openalex.org/W2237480245","https://openalex.org/W2519167559","https://openalex.org/W3121164913","https://openalex.org/W2951699435","https://openalex.org/W2724782166"],"abstract_inverted_index":{"MOTIVATION:":[0],"In":[1],"a":[2,8,80,90,157,216,247],"series":[3],"of":[4,15,29,39,47,106,109,124,130,136,145,159,188,195,215,224,253],"recent":[5,118],"papers,":[6],"Tess,":[7],"computer":[9],"program":[10,179,206],"based":[11,275],"on":[12,93,121,233,276],"the":[13,25,34,97,107,122,131,137,177,181,204,208,222,234,241,254,283],"concept":[14],"hidden":[16],"Markov":[17],"random":[18],"field,":[19],"has":[20,62],"been":[21,63],"proposed":[22],"to":[23,45,68,87,89,115,184,199,211,221,246,250,270],"infer":[24],"number":[26,229],"and":[27,36,60,71,85,112,149,152,230,265],"locations":[28,38],"panmictic":[30],"population":[31,219,262],"units":[32],"from":[33,288],"genotypes":[35],"spatial":[37],"these":[40],"individuals.":[41],"The":[42,100,258,279],"method":[43,84,111,126,171],"seems":[44,86],"be":[46,69,251,267],"broad":[48],"appeal":[49],"as":[50],"it":[51,61],"is":[52,76,103],"conceptually":[53],"much":[54],"simpler":[55],"than":[56],"other":[57],"competing":[58],"methods":[59],"reported":[64,120,239],"by":[65],"its":[66],"authors":[67],"fast":[70],"accurate.":[72],"However,":[73],"this":[74,110,125,170],"methodology":[75,256],"not":[77],"grounded":[78],"in":[79,282],"formal":[81],"statistical":[82,255],"inference":[83,223],"rely":[88],"large":[91,248],"extent":[92,249],"arbitrary":[94],"choices":[95],"regarding":[96],"parameters":[98,235],"used.":[99,236,257],"present":[101,284],"article":[102,285],"an":[104,113,268],"investigation":[105],"accuracy":[108],"attempt":[114],"assess":[116],"whether":[117],"results":[119],"basis":[123],"are":[127,172,286],"genuine":[128,190],"features":[129,231],"genetic":[132],"process":[133],"or":[134],"artefacts":[135,252],"method.":[138],"METHOD:":[139],"I":[140],"analyse":[141,185,212],"simulated":[142,155],"data":[143,154,166,186,213,280],"consisting":[144,187,214],"populations":[146,192,227],"at":[147,161],"Hardy-Weinberg":[148],"linkage":[150],"equilibrium":[151],"also":[153,173],"under":[156,180,207],"scenario":[158],"isolation-by-distance":[160,218],"mutation-migration-drift":[162],"equilibrium.":[163],"Arabidopsis":[164],"thaliana":[165],"previously":[167,238],"analysed":[168,281],"with":[169,193],"reconsidered.":[174],"RESULTS:":[175],"Using":[176,203],"Tess":[178,205,244],"no-admixture":[182],"model":[183,210],"several":[189],"HWLE":[191,226],"individuals":[194],"pure":[196],"ancestries":[197],"leads":[198,220],"highly":[200],"inaccurate":[201],"results;":[202],"admixture":[209],"continuous":[217],"spurious":[225],"whose":[228],"depend":[232],"Results":[237],"about":[240],"A.thaliana":[242],"using":[243],"seem":[245],"findings":[259],"go":[260],"beyond":[261],"clustering":[263],"models":[264],"can":[266],"help":[269],"design":[271],"more":[272],"efficient":[273],"algorithms":[274],"graphs.":[277],"AVAILABILITY:":[278],"available":[287],"http://folk.uio.no/gillesg/Bioinformatics-HMRF.":[289]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}