{"id":"https://openalex.org/W2115024484","doi":"https://doi.org/10.1093/bioinformatics/btp249","title":"MeSH Up: effective MeSH text classification for improved document retrieval","display_name":"MeSH Up: effective MeSH text classification for improved document retrieval","publication_year":2009,"publication_date":"2009-04-17","ids":{"openalex":"https://openalex.org/W2115024484","doi":"https://doi.org/10.1093/bioinformatics/btp249","mag":"2115024484","pmid":"https://pubmed.ncbi.nlm.nih.gov/19376821"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp249","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp249","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/2066/75169","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049879333","display_name":"Dolf Trieschnigg","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I94624287","display_name":"University of Twente","ror":"https://ror.org/006hf6230","country_code":"NL","type":"education","lineage":["https://openalex.org/I94624287"]}],"countries":["GB","NL"],"is_corresponding":false,"raw_author_name":"Dolf Trieschnigg","raw_affiliation_strings":["1 European Bioinformatics Institute, Hinxton, UK, 2HMI, University of Twente, Enschede and 3TNO ICT, Delft, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 European Bioinformatics Institute, Hinxton, UK, 2HMI, University of Twente, Enschede and 3TNO ICT, Delft, The Netherlands","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I94624287"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062662647","display_name":"Piotr P\u0119zik","orcid":"https://orcid.org/0000-0003-0019-5840"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I94624287","display_name":"University of Twente","ror":"https://ror.org/006hf6230","country_code":"NL","type":"education","lineage":["https://openalex.org/I94624287"]}],"countries":["GB","NL"],"is_corresponding":false,"raw_author_name":"Piotr Pezik","raw_affiliation_strings":["1 European Bioinformatics Institute, Hinxton, UK, 2HMI, University of Twente, Enschede and 3TNO ICT, Delft, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 European Bioinformatics Institute, Hinxton, UK, 2HMI, University of Twente, Enschede and 3TNO ICT, Delft, The Netherlands","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I94624287"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103368716","display_name":"Vivian Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I94624287","display_name":"University of Twente","ror":"https://ror.org/006hf6230","country_code":"NL","type":"education","lineage":["https://openalex.org/I94624287"]}],"countries":["GB","NL"],"is_corresponding":false,"raw_author_name":"Vivian Lee","raw_affiliation_strings":["1 European Bioinformatics Institute, Hinxton, UK, 2HMI, University of Twente, Enschede and 3TNO ICT, Delft, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 European Bioinformatics Institute, Hinxton, UK, 2HMI, University of Twente, Enschede and 3TNO ICT, Delft, The Netherlands","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I94624287"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005474414","display_name":"Franciska de Jong","orcid":"https://orcid.org/0000-0003-1541-9712"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I94624287","display_name":"University of Twente","ror":"https://ror.org/006hf6230","country_code":"NL","type":"education","lineage":["https://openalex.org/I94624287"]}],"countries":["GB","NL"],"is_corresponding":false,"raw_author_name":"Franciska de Jong","raw_affiliation_strings":["1 European Bioinformatics Institute, Hinxton, UK, 2HMI, University of Twente, Enschede and 3TNO ICT, Delft, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 European Bioinformatics Institute, Hinxton, UK, 2HMI, University of Twente, Enschede and 3TNO ICT, Delft, The Netherlands","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I94624287"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049624750","display_name":"Wessel Kraaij","orcid":"https://orcid.org/0000-0001-7797-619X"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I94624287","display_name":"University of Twente","ror":"https://ror.org/006hf6230","country_code":"NL","type":"education","lineage":["https://openalex.org/I94624287"]}],"countries":["GB","NL"],"is_corresponding":false,"raw_author_name":"Wessel Kraaij","raw_affiliation_strings":["1 European Bioinformatics Institute, Hinxton, UK, 2HMI, University of Twente, Enschede and 3TNO ICT, Delft, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 European Bioinformatics Institute, Hinxton, UK, 2HMI, University of Twente, Enschede and 3TNO ICT, Delft, The Netherlands","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I94624287"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006224704","display_name":"Dietrich Rebholz\u2010Schuhmann","orcid":"https://orcid.org/0000-0002-1018-0370"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I94624287","display_name":"University of Twente","ror":"https://ror.org/006hf6230","country_code":"NL","type":"education","lineage":["https://openalex.org/I94624287"]}],"countries":["GB","NL"],"is_corresponding":false,"raw_author_name":"Dietrich Rebholz-Schuhmann","raw_affiliation_strings":["1 European Bioinformatics Institute, Hinxton, UK, 2HMI, University of Twente, Enschede and 3TNO ICT, Delft, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 European Bioinformatics Institute, Hinxton, UK, 2HMI, University of Twente, Enschede and 3TNO ICT, Delft, The Netherlands","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I94624287"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.9024,"has_fulltext":true,"cited_by_count":96,"citation_normalized_percentile":{"value":0.9447723,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":100},"biblio":{"volume":"25","issue":"11","first_page":"1412","last_page":"1418"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9514999985694885,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9514999985694885,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11550","display_name":"Text and Document Classification Technologies","score":0.016300000250339508,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.006899999920278788,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8482644557952881},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.7126244902610779},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6843775510787964},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.59309983253479},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5672695636749268},{"id":"https://openalex.org/keywords/thesaurus","display_name":"Thesaurus","score":0.5527792572975159},{"id":"https://openalex.org/keywords/vector-space-model","display_name":"Vector space model","score":0.5025906562805176},{"id":"https://openalex.org/keywords/ambiguity","display_name":"Ambiguity","score":0.47213679552078247},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.45590490102767944},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.4319906234741211},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3534223437309265},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33413416147232056},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32090091705322266},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.12356120347976685}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8482644557952881},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.7126244902610779},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6843775510787964},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.59309983253479},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5672695636749268},{"id":"https://openalex.org/C2778698081","wikidata":"https://www.wikidata.org/wiki/Q179797","display_name":"Thesaurus","level":2,"score":0.5527792572975159},{"id":"https://openalex.org/C89686163","wikidata":"https://www.wikidata.org/wiki/Q1187982","display_name":"Vector space model","level":2,"score":0.5025906562805176},{"id":"https://openalex.org/C2780522230","wikidata":"https://www.wikidata.org/wiki/Q1140419","display_name":"Ambiguity","level":2,"score":0.47213679552078247},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.45590490102767944},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.4319906234741211},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3534223437309265},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33413416147232056},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32090091705322266},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12356120347976685},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1093/bioinformatics/btp249","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp249","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19376821","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19376821","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:ris.utwente.nl:openaire_cris_publications/a22476cd-e72a-4167-8597-533fc9059e1b","is_oa":false,"landing_page_url":"https://research.utwente.nl/en/publications/a22476cd-e72a-4167-8597-533fc9059e1b","pdf_url":null,"source":{"id":"https://openalex.org/S4406922991","display_name":"University of Twente Research Information","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Trieschnigg, R B, Pezik, P, Lee, V, de Jong, F M G, Kraaij, W & Rebholz-Schuhmann, D 2009, 'MeSH Up: effective MeSH text classification for improved document retrieval', Bioinformatics, vol. 25, no. 11, 10.1093/bioinformatics/btp249, pp. 1412-1418. https://doi.org/10.1093/bioinformatics/btp249","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:ru:oai:repository.ubn.ru.nl:2066/75169","is_oa":true,"landing_page_url":"http://hdl.handle.net/2066/75169","pdf_url":"http://hdl.handle.net/2066/75169","source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 25, 1412 - 1418","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:openaccess.leidenuniv.nl:1887/62248","is_oa":false,"landing_page_url":"http://hdl.handle.net/1887/62248","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"25","raw_type":"Article / Letter to editor"},{"id":"pmh:oai:pubmedcentral.nih.gov:2682526","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2682526","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_2882271","is_oa":false,"landing_page_url":"https://hdl.handle.net/1887/62248","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Article / Letter to editor"},{"id":"pmh:oai:tudelft.nl:uuid:e95db94b-425d-47b5-97a6-e0fa8c37a596","is_oa":false,"landing_page_url":"http://resolver.tudelft.nl/uuid:e95db94b-425d-47b5-97a6-e0fa8c37a596","pdf_url":null,"source":{"id":"https://openalex.org/S4306402238","display_name":"Repository hosted by TU Delft Library (TU Delft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98358874","host_organization_name":"Delft University of Technology","host_organization_lineage":["https://openalex.org/I98358874"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 11, 25, 1412-1418","raw_type":"article"}],"best_oa_location":{"id":"pmh:ru:oai:repository.ubn.ru.nl:2066/75169","is_oa":true,"landing_page_url":"http://hdl.handle.net/2066/75169","pdf_url":"http://hdl.handle.net/2066/75169","source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 25, 1412 - 1418","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"score":0.800000011920929,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2115024484.pdf"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1482214997","https://openalex.org/W1519796834","https://openalex.org/W1540124269","https://openalex.org/W1550258693","https://openalex.org/W1550518777","https://openalex.org/W1751470192","https://openalex.org/W1924689489","https://openalex.org/W1981612867","https://openalex.org/W1990190154","https://openalex.org/W2026953311","https://openalex.org/W2035754578","https://openalex.org/W2061172803","https://openalex.org/W2066207574","https://openalex.org/W2071664212","https://openalex.org/W2093969396","https://openalex.org/W2097653284","https://openalex.org/W2108671185","https://openalex.org/W2114370860","https://openalex.org/W2123273303","https://openalex.org/W2131674595","https://openalex.org/W2142515059","https://openalex.org/W2154016822","https://openalex.org/W2160171761","https://openalex.org/W4256565756","https://openalex.org/W6628905179","https://openalex.org/W6632313116","https://openalex.org/W6632766574","https://openalex.org/W6633132524","https://openalex.org/W6657520196","https://openalex.org/W6659279965","https://openalex.org/W6668334885","https://openalex.org/W6678356393","https://openalex.org/W6682988818","https://openalex.org/W6683709678"],"related_works":["https://openalex.org/W1955525925","https://openalex.org/W2383984520","https://openalex.org/W2509297716","https://openalex.org/W1508778694","https://openalex.org/W138082899","https://openalex.org/W1519810859","https://openalex.org/W2114373757","https://openalex.org/W2159583324","https://openalex.org/W2600333665","https://openalex.org/W2036729745"],"abstract_inverted_index":{"MOTIVATION:":[0],"Controlled":[1],"vocabularies":[2,196],"such":[3,197],"as":[4,198],"the":[5,12,28,38,76,114,127,168,183,208],"Medical":[6],"Subject":[7],"Headings":[8],"(MeSH)":[9],"thesaurus":[10],"and":[11,22,87,98,104,118,143,218],"Gene":[13],"Ontology":[14],"(GO)":[15],"provide":[16],"an":[17],"efficient":[18],"way":[19],"of":[20,36,40,59,70,78,102,124,170,191],"accessing":[21],"organizing":[23],"biomedical":[24,192],"information":[25,164],"by":[26,149],"reducing":[27],"ambiguity":[29],"inherent":[30],"to":[31,46,55,134,181,203],"free-text":[32],"data.":[33],"Different":[34],"methods":[35],"automating":[37],"assignment":[39],"MeSH":[41,60,80,107,129,138,178,199,210],"concepts":[42],"have":[43,62],"been":[44,64],"proposed":[45],"replace":[47],"manual":[48,106,137,229],"annotation,":[49],"but":[50],"they":[51,145],"are":[52],"either":[53],"limited":[54,68],"a":[56,67,85,88,93,156,171],"small":[57],"subset":[58],"or":[61],"only":[63],"compared":[65,180],"with":[66,121,177,225],"number":[69],"other":[71,115],"systems.":[72],"RESULTS:":[73],"We":[74,152],"compare":[75],"performance":[77],"six":[79],"classification":[81],"systems":[82],"[MetaMap,":[83],"EAGL,":[84],"language":[86],"vector":[89],"space":[90],"model-based":[91],"approach,":[92],"K-Nearest":[94],"Neighbor":[95],"(KNN)":[96],"approach":[97],"MTI]":[99],"in":[100,163,222],"terms":[101],"reproducing":[103],"complementing":[105],"annotations.":[108,151,230],"A":[109],"KNN":[110],"system":[111,212],"clearly":[112],"outperforms":[113],"published":[116],"approaches":[117],"scales":[119],"well":[120],"large":[122],"amounts":[123],"text":[125,169],"using":[126,182,194],"full":[128],"thesaurus.":[130],"Our":[131],"measurements":[132],"demonstrate":[133],"what":[135],"extent":[136],"annotations":[139],"can":[140,146,160,200],"be":[141,147,161,201],"reproduced":[142],"how":[144],"complemented":[148],"automatic":[150,209],"also":[153],"show":[154],"that":[155],"statistically":[157],"significant":[158],"improvement":[159],"obtained":[162],"retrieval":[165],"(IR)":[166],"when":[167],"user's":[172],"query":[173,186],"is":[174,215],"automatically":[175],"annotated":[176],"concepts,":[179],"original":[184],"textual":[185],"alone.":[187],"CONCLUSIONS:":[188],"The":[189],"annotation":[190,211],"texts":[193],"controlled":[195],"automated":[202],"improve":[204],"text-only":[205],"IR.":[206],"Furthermore,":[207],"we":[213],"propose":[214],"highly":[216],"scalable":[217],"it":[219],"generates":[220],"improvements":[221],"IR":[223],"comparable":[224],"those":[226],"observed":[227],"for":[228]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":13}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
