{"id":"https://openalex.org/W2143353625","doi":"https://doi.org/10.1093/bioinformatics/btp245","title":"Bayesian inference of protein\u2013protein interactions from biological literature","display_name":"Bayesian inference of protein\u2013protein interactions from biological literature","publication_year":2009,"publication_date":"2009-04-15","ids":{"openalex":"https://openalex.org/W2143353625","doi":"https://doi.org/10.1093/bioinformatics/btp245","mag":"2143353625","pmid":"https://pubmed.ncbi.nlm.nih.gov/19369495"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp245","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/12/1536/48992144/bioinformatics_25_12_1536.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/12/1536/48992144/bioinformatics_25_12_1536.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108764294","display_name":"Rajesh Chowdhary","orcid":null},"institutions":[{"id":"https://openalex.org/I103163165","display_name":"Florida State University","ror":"https://ror.org/05g3dte14","country_code":"US","type":"education","lineage":["https://openalex.org/I103163165"]},{"id":"https://openalex.org/I1315135799","display_name":"Marshfield Clinic","ror":"https://ror.org/025chrz76","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315135799"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rajesh Chowdhary","raw_affiliation_strings":["1 Department of Statistics, Harvard University, Cambridge, MA 02138, 2Marshfield Clinic-Marshfield Center, MCRF-BIRC, 1000 North Oak Avenue, Marshfield, WI 54449 and 3Department of Statistics, Florida State University, Tallahassee, FL 32306, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, Harvard University, Cambridge, MA 02138, 2Marshfield Clinic-Marshfield Center, MCRF-BIRC, 1000 North Oak Avenue, Marshfield, WI 54449 and 3Department of Statistics, Florida State University, Tallahassee, FL 32306, USA","institution_ids":["https://openalex.org/I103163165","https://openalex.org/I1315135799","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100407234","display_name":"Jinfeng Zhang","orcid":"https://orcid.org/0000-0002-7429-7615"},"institutions":[{"id":"https://openalex.org/I103163165","display_name":"Florida State University","ror":"https://ror.org/05g3dte14","country_code":"US","type":"education","lineage":["https://openalex.org/I103163165"]},{"id":"https://openalex.org/I1315135799","display_name":"Marshfield Clinic","ror":"https://ror.org/025chrz76","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315135799"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinfeng Zhang","raw_affiliation_strings":["1 Department of Statistics, Harvard University, Cambridge, MA 02138, 2Marshfield Clinic-Marshfield Center, MCRF-BIRC, 1000 North Oak Avenue, Marshfield, WI 54449 and 3Department of Statistics, Florida State University, Tallahassee, FL 32306, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, Harvard University, Cambridge, MA 02138, 2Marshfield Clinic-Marshfield Center, MCRF-BIRC, 1000 North Oak Avenue, Marshfield, WI 54449 and 3Department of Statistics, Florida State University, Tallahassee, FL 32306, USA","institution_ids":["https://openalex.org/I103163165","https://openalex.org/I1315135799","https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012820890","display_name":"Jun S. Liu","orcid":"https://orcid.org/0000-0002-4450-7239"},"institutions":[{"id":"https://openalex.org/I103163165","display_name":"Florida State University","ror":"https://ror.org/05g3dte14","country_code":"US","type":"education","lineage":["https://openalex.org/I103163165"]},{"id":"https://openalex.org/I1315135799","display_name":"Marshfield Clinic","ror":"https://ror.org/025chrz76","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315135799"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jun S. Liu","raw_affiliation_strings":["1 Department of Statistics, Harvard University, Cambridge, MA 02138, 2Marshfield Clinic-Marshfield Center, MCRF-BIRC, 1000 North Oak Avenue, Marshfield, WI 54449 and 3Department of Statistics, Florida State University, Tallahassee, FL 32306, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Statistics, Harvard University, Cambridge, MA 02138, 2Marshfield Clinic-Marshfield Center, MCRF-BIRC, 1000 North Oak Avenue, Marshfield, WI 54449 and 3Department of Statistics, Florida State University, Tallahassee, FL 32306, USA","institution_ids":["https://openalex.org/I103163165","https://openalex.org/I1315135799","https://openalex.org/I136199984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5012820890"],"corresponding_institution_ids":["https://openalex.org/I103163165","https://openalex.org/I1315135799","https://openalex.org/I136199984"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.3993,"has_fulltext":false,"cited_by_count":74,"citation_normalized_percentile":{"value":0.93268504,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"25","issue":"12","first_page":"1536","last_page":"1542"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.010900000110268593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7716556787490845},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.5690567493438721},{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.5686004161834717},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5434844493865967},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.4877232015132904},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47958579659461975},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4470828175544739},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3945116400718689},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37452414631843567},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.332805335521698},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11086925864219666}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7716556787490845},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.5690567493438721},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.5686004161834717},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5434844493865967},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.4877232015132904},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47958579659461975},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4470828175544739},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3945116400718689},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37452414631843567},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.332805335521698},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11086925864219666},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp245","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/12/1536/48992144/bioinformatics_25_12_1536.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19369495","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19369495","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2732911","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2732911","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp245","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/12/1536/48992144/bioinformatics_25_12_1536.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1362299450","display_name":null,"funder_award_id":"R01-GM078990","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2719944227","display_name":null,"funder_award_id":"R01 HG002518","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G6518194139","display_name":null,"funder_award_id":"R01-HG02518-02","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G6995586792","display_name":null,"funder_award_id":"R01 GM078990","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2143353625.pdf"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W86561409","https://openalex.org/W1508416409","https://openalex.org/W1570448133","https://openalex.org/W1759990168","https://openalex.org/W1974165330","https://openalex.org/W1981933378","https://openalex.org/W1983453172","https://openalex.org/W1994306321","https://openalex.org/W1999117234","https://openalex.org/W2004620268","https://openalex.org/W2016928406","https://openalex.org/W2037442572","https://openalex.org/W2041904585","https://openalex.org/W2048503857","https://openalex.org/W2064030835","https://openalex.org/W2071475771","https://openalex.org/W2074027358","https://openalex.org/W2090248239","https://openalex.org/W2093618552","https://openalex.org/W2101727078","https://openalex.org/W2104965688","https://openalex.org/W2109070394","https://openalex.org/W2115590900","https://openalex.org/W2117625122","https://openalex.org/W2120433106","https://openalex.org/W2121844933","https://openalex.org/W2130687290","https://openalex.org/W2133167066","https://openalex.org/W2141605886","https://openalex.org/W2144896636","https://openalex.org/W2148130205","https://openalex.org/W2152653671","https://openalex.org/W2152698860","https://openalex.org/W2155699197","https://openalex.org/W2155846926","https://openalex.org/W2156930958","https://openalex.org/W2158505321","https://openalex.org/W2159203162","https://openalex.org/W2163485494","https://openalex.org/W2166043581","https://openalex.org/W2169250301","https://openalex.org/W2342313026","https://openalex.org/W2916288174","https://openalex.org/W4240689716","https://openalex.org/W6603577330","https://openalex.org/W6638118764","https://openalex.org/W6645896537","https://openalex.org/W6645995274","https://openalex.org/W6649991593","https://openalex.org/W6660955582","https://openalex.org/W6673154977","https://openalex.org/W6673992197","https://openalex.org/W6682425626"],"related_works":["https://openalex.org/W1892467659","https://openalex.org/W2086733238","https://openalex.org/W2961085424","https://openalex.org/W1529400504","https://openalex.org/W4306674287","https://openalex.org/W2349392800","https://openalex.org/W2355288082","https://openalex.org/W4224009465","https://openalex.org/W2357241418","https://openalex.org/W4286629047"],"abstract_inverted_index":{"MOTIVATION:":[0],"Protein-protein":[1],"interaction":[2,68],"(PPI)":[3],"extraction":[4],"from":[5,28,70,96,119],"published":[6],"biological":[7,21],"articles":[8],"has":[9],"attracted":[10],"much":[11],"attention":[12],"because":[13],"of":[14,17,61,79,100,116],"the":[15,66,126],"importance":[16],"protein":[18,63],"interactions":[19],"in":[20,125],"processes.":[22],"Despite":[23],"significant":[24],"progress,":[25],"mining":[26],"PPIs":[27,118],"literatures":[29],"still":[30],"rely":[31],"heavily":[32],"on":[33,49,81],"time-":[34],"and":[35,65],"resource-consuming":[36],"manual":[37],"annotations.":[38],"RESULTS:":[39],"In":[40],"this":[41],"study,":[42],"we":[43,123],"developed":[44],"a":[45,82,97],"novel":[46],"methodology":[47],"based":[48],"Bayesian":[50],"networks":[51],"(BNs)":[52],"for":[53],"extracting":[54,93],"PPI":[55,58,94],"triplets":[56,95],"(a":[57],"triplet":[59],"consists":[60],"two":[62],"names":[64],"corresponding":[67],"word)":[69],"unstructured":[71],"text.":[72],"The":[73],"method":[74,105],"achieved":[75],"an":[76],"overall":[77],"accuracy":[78],"87%":[80],"cross-validation":[83],"test":[84],"using":[85],"manually":[86],"annotated":[87],"dataset.":[88],"We":[89],"also":[90],"showed,":[91],"through":[92],"large":[98,114],"number":[99,115],"PubMed":[101],"abstracts,":[102],"that":[103],"our":[104],"was":[106],"able":[107],"to":[108,112],"complement":[109],"human":[110],"annotations":[111],"extract":[113],"new":[117],"literature.":[120],"AVAILABILITY:":[121],"Programs/scripts":[122],"developed/used":[124],"study":[127],"are":[128,136],"available":[129,137],"at":[130,138],"http://stat.fsu.edu/~jinfeng/datasets/Bio-SI-programs-Bayesian-chowdhary-zhang-liu.zip.":[131],"SUPPLEMENTARY":[132],"INFORMATION:":[133],"Supplementary":[134],"data":[135],"Bioinformatics":[139],"online.":[140]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":13},{"year":2012,"cited_by_count":6}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
