{"id":"https://openalex.org/W2121171791","doi":"https://doi.org/10.1093/bioinformatics/btp215","title":"Probabilistic retrieval and visualization of biologically relevant microarray experiments","display_name":"Probabilistic retrieval and visualization of biologically relevant microarray experiments","publication_year":2009,"publication_date":"2009-05-27","ids":{"openalex":"https://openalex.org/W2121171791","doi":"https://doi.org/10.1093/bioinformatics/btp215","mag":"2121171791","pmid":"https://pubmed.ncbi.nlm.nih.gov/19477980"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp215","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp215","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/12/i145/471266/btp215.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/12/i145/471266/btp215.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111917467","display_name":"Jos\u00e9 Caldas","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}],"countries":["FI","GB"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Caldas","raw_affiliation_strings":["1 Helsinki Institute for Information Technology, Department of Information and Computer Science, Helsinki University of Technology, Finland, 2Microarray Team, European Bioinformatics Institute and 3Graduate School of Life Sciences, University of Cambridge, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology, Department of Information and Computer Science, Helsinki University of Technology, Finland, 2Microarray Team, European Bioinformatics Institute and 3Graduate School of Life Sciences, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I241749","https://openalex.org/I32943570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066335313","display_name":"Nils Gehlenborg","orcid":"https://orcid.org/0000-0003-0327-8297"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}],"countries":["FI","GB"],"is_corresponding":false,"raw_author_name":"Nils Gehlenborg","raw_affiliation_strings":["1 Helsinki Institute for Information Technology, Department of Information and Computer Science, Helsinki University of Technology, Finland, 2Microarray Team, European Bioinformatics Institute and 3Graduate School of Life Sciences, University of Cambridge, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology, Department of Information and Computer Science, Helsinki University of Technology, Finland, 2Microarray Team, European Bioinformatics Institute and 3Graduate School of Life Sciences, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I241749","https://openalex.org/I32943570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046946670","display_name":"Ali Faisal","orcid":"https://orcid.org/0000-0001-9607-9371"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}],"countries":["FI","GB"],"is_corresponding":false,"raw_author_name":"Ali Faisal","raw_affiliation_strings":["1 Helsinki Institute for Information Technology, Department of Information and Computer Science, Helsinki University of Technology, Finland, 2Microarray Team, European Bioinformatics Institute and 3Graduate School of Life Sciences, University of Cambridge, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology, Department of Information and Computer Science, Helsinki University of Technology, Finland, 2Microarray Team, European Bioinformatics Institute and 3Graduate School of Life Sciences, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I241749","https://openalex.org/I32943570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081419327","display_name":"Alvis Br\u0101zma","orcid":"https://orcid.org/0000-0001-5988-7409"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}],"countries":["FI","GB"],"is_corresponding":false,"raw_author_name":"Alvis Brazma","raw_affiliation_strings":["1 Helsinki Institute for Information Technology, Department of Information and Computer Science, Helsinki University of Technology, Finland, 2Microarray Team, European Bioinformatics Institute and 3Graduate School of Life Sciences, University of Cambridge, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology, Department of Information and Computer Science, Helsinki University of Technology, Finland, 2Microarray Team, European Bioinformatics Institute and 3Graduate School of Life Sciences, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I241749","https://openalex.org/I32943570"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018305257","display_name":"Samuel Kaski","orcid":"https://orcid.org/0000-0003-1925-9154"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}],"countries":["FI","GB"],"is_corresponding":false,"raw_author_name":"Samuel Kaski","raw_affiliation_strings":["1 Helsinki Institute for Information Technology, Department of Information and Computer Science, Helsinki University of Technology, Finland, 2Microarray Team, European Bioinformatics Institute and 3Graduate School of Life Sciences, University of Cambridge, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology, Department of Information and Computer Science, Helsinki University of Technology, Finland, 2Microarray Team, European Bioinformatics Institute and 3Graduate School of Life Sciences, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I241749","https://openalex.org/I32943570"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.7626,"has_fulltext":true,"cited_by_count":49,"citation_normalized_percentile":{"value":0.84367273,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"25","issue":"12","first_page":"i145","last_page":"i153"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8507999777793884,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8507999777793884,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.07779999822378159,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.029899999499320984,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7217767238616943},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6966693997383118},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6550670862197876},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.6541653871536255},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5130723714828491},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4469550549983978},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.43450090289115906},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.42915600538253784},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3221329152584076},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25752249360084534},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20340189337730408},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19095474481582642},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1283321976661682}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7217767238616943},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6966693997383118},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6550670862197876},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.6541653871536255},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5130723714828491},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4469550549983978},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.43450090289115906},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.42915600538253784},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3221329152584076},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25752249360084534},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20340189337730408},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19095474481582642},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1283321976661682},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp215","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp215","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/12/i145/471266/btp215.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19477980","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19477980","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:1855997","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2687969","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp215","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp215","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/12/i145/471266/btp215.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320314023","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39"},{"id":"https://openalex.org/F4320321855","display_name":"Tekes","ror":"https://ror.org/02ag8cq23"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2121171791.pdf","grobid_xml":"https://content.openalex.org/works/W2121171791.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1544903588","https://openalex.org/W1564398635","https://openalex.org/W1880262756","https://openalex.org/W1981191944","https://openalex.org/W2001082470","https://openalex.org/W2015787726","https://openalex.org/W2091004422","https://openalex.org/W2092732688","https://openalex.org/W2099101879","https://openalex.org/W2101696428","https://openalex.org/W2103129584","https://openalex.org/W2106323366","https://openalex.org/W2106757524","https://openalex.org/W2108671185","https://openalex.org/W2112464428","https://openalex.org/W2120449613","https://openalex.org/W2121604817","https://openalex.org/W2123106337","https://openalex.org/W2124767974","https://openalex.org/W2127053639","https://openalex.org/W2130410032","https://openalex.org/W2132827946","https://openalex.org/W2132992030","https://openalex.org/W2139380568","https://openalex.org/W2140858267","https://openalex.org/W2144586791","https://openalex.org/W2146280873","https://openalex.org/W2151646205","https://openalex.org/W2159482845","https://openalex.org/W2169536307","https://openalex.org/W2171353991","https://openalex.org/W3099640513","https://openalex.org/W4294216483","https://openalex.org/W6634118655","https://openalex.org/W6639619044","https://openalex.org/W6681142691","https://openalex.org/W6785094883"],"related_works":["https://openalex.org/W1892467659","https://openalex.org/W4290792893","https://openalex.org/W1529400504","https://openalex.org/W2357241418","https://openalex.org/W1549056443","https://openalex.org/W2998403542","https://openalex.org/W2808586768","https://openalex.org/W2086064646","https://openalex.org/W2119135658","https://openalex.org/W2115485936"],"abstract_inverted_index":{"MOTIVATION:":[0],"As":[1],"ArrayExpress":[2,130],"and":[3,88,116,119],"other":[4],"repositories":[5],"of":[6,43,86,129,137,155],"genome-wide":[7],"experiments":[8,54,69,109,143],"are":[9,61,114],"reaching":[10],"a":[11,25,84,127,134],"mature":[12],"size,":[13],"it":[14],"is":[15,51,165],"becoming":[16],"more":[17,45],"meaningful":[18],"to":[19,36,52,68,76,94,106,117,145],"search":[20,35],"for":[21,33],"related":[22],"experiments,":[23],"given":[24],"particular":[26,146],"study.":[27],"We":[28,82],"introduce":[29],"methods":[30],"that":[31],"allow":[32],"the":[34,44,57,71,98,111,121,159],"be":[37,65,151],"based":[38],"upon":[39],"measurement":[40],"data,":[41,138],"instead":[42],"customary":[46],"annotation":[47],"data.":[48],"The":[49,163],"goal":[50],"retrieve":[53,107],"in":[55,103,153],"which":[56],"same":[58,72,112],"biological":[59,73,99,147,156],"processes":[60,100,113,157],"activated.":[62],"This":[63],"can":[64,150],"due":[66],"either":[67],"targeting":[70],"question,":[74],"or":[75],"as":[77],"yet":[78],"unknown":[79],"relationships.":[80],"RESULTS:":[81],"use":[83],"combination":[85],"existing":[87],"new":[89],"probabilistic":[90],"machine":[91],"learning":[92],"techniques":[93],"extract":[95],"information":[96],"about":[97],"differentially":[101],"activated":[102,115],"each":[104],"experiment,":[105],"earlier":[108],"where":[110],"visualize":[118],"interpret":[120],"retrieval":[122],"results.":[123],"Case":[124],"studies":[125],"on":[126],"subset":[128],"show":[131],"that,":[132],"with":[133],"sufficient":[135],"amount":[136],"our":[139],"method":[140],"indeed":[141],"finds":[142],"relevant":[144],"questions.":[148],"Results":[149],"interpreted":[152],"terms":[154],"using":[158],"visualization":[160],"techniques.":[161],"AVAILABILITY:":[162],"code":[164],"available":[166],"from":[167],"http://www.cis.hut.fi/projects/mi/software/ismb09.":[168]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
