{"id":"https://openalex.org/W2113329851","doi":"https://doi.org/10.1093/bioinformatics/btp183","title":"IGG3: a tool to rapidly integrate large genotype datasets for whole-genome imputation and individual-level meta-analysis","display_name":"IGG3: a tool to rapidly integrate large genotype datasets for whole-genome imputation and individual-level meta-analysis","publication_year":2009,"publication_date":"2009-04-03","ids":{"openalex":"https://openalex.org/W2113329851","doi":"https://doi.org/10.1093/bioinformatics/btp183","mag":"2113329851","pmid":"https://pubmed.ncbi.nlm.nih.gov/19346322"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp183","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp183","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040633212","display_name":"Miaoxin Li","orcid":"https://orcid.org/0000-0002-4733-0109"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I77396741","display_name":"Hunan University of Technology and Business","ror":"https://ror.org/057cydn08","country_code":"CN","type":"education","lineage":["https://openalex.org/I77396741"]}],"countries":["CN","HK"],"is_corresponding":true,"raw_author_name":"Miao-Xin Li","raw_affiliation_strings":["1 Department of Biochemistry, The University of Hong Kong, Pokfulam, Hong Kong, 2The Center for Experiment, Hunan University of Commerce, Changsha, Hunan 410205, China, 3Department of Psychiatry and 4The Centre for Reproduction, Development and Growth, The University of Hong Kong, Pokfulam, Hong Kong"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry, The University of Hong Kong, Pokfulam, Hong Kong, 2The Center for Experiment, Hunan University of Commerce, Changsha, Hunan 410205, China, 3Department of Psychiatry and 4The Centre for Reproduction, Development and Growth, The University of Hong Kong, Pokfulam, Hong Kong","institution_ids":["https://openalex.org/I77396741","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102080823","display_name":"Lin Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I77396741","display_name":"Hunan University of Technology and Business","ror":"https://ror.org/057cydn08","country_code":"CN","type":"education","lineage":["https://openalex.org/I77396741"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Lin Jiang","raw_affiliation_strings":["1 Department of Biochemistry, The University of Hong Kong, Pokfulam, Hong Kong, 2The Center for Experiment, Hunan University of Commerce, Changsha, Hunan 410205, China, 3Department of Psychiatry and 4The Centre for Reproduction, Development and Growth, The University of Hong Kong, Pokfulam, Hong Kong"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry, The University of Hong Kong, Pokfulam, Hong Kong, 2The Center for Experiment, Hunan University of Commerce, Changsha, Hunan 410205, China, 3Department of Psychiatry and 4The Centre for Reproduction, Development and Growth, The University of Hong Kong, Pokfulam, Hong Kong","institution_ids":["https://openalex.org/I77396741","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018275690","display_name":"Patrick Y.P. Kao","orcid":"https://orcid.org/0000-0001-7368-4595"},"institutions":[{"id":"https://openalex.org/I77396741","display_name":"Hunan University of Technology and Business","ror":"https://ror.org/057cydn08","country_code":"CN","type":"education","lineage":["https://openalex.org/I77396741"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Patrick Yu-Ping Kao","raw_affiliation_strings":["1 Department of Biochemistry, The University of Hong Kong, Pokfulam, Hong Kong, 2The Center for Experiment, Hunan University of Commerce, Changsha, Hunan 410205, China, 3Department of Psychiatry and 4The Centre for Reproduction, Development and Growth, The University of Hong Kong, Pokfulam, Hong Kong"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry, The University of Hong Kong, Pokfulam, Hong Kong, 2The Center for Experiment, Hunan University of Commerce, Changsha, Hunan 410205, China, 3Department of Psychiatry and 4The Centre for Reproduction, Development and Growth, The University of Hong Kong, Pokfulam, Hong Kong","institution_ids":["https://openalex.org/I77396741","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103543819","display_name":"Pak-C. Sham","orcid":null},"institutions":[{"id":"https://openalex.org/I77396741","display_name":"Hunan University of Technology and Business","ror":"https://ror.org/057cydn08","country_code":"CN","type":"education","lineage":["https://openalex.org/I77396741"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Pak-C. Sham","raw_affiliation_strings":["1 Department of Biochemistry, The University of Hong Kong, Pokfulam, Hong Kong, 2The Center for Experiment, Hunan University of Commerce, Changsha, Hunan 410205, China, 3Department of Psychiatry and 4The Centre for Reproduction, Development and Growth, The University of Hong Kong, Pokfulam, Hong Kong"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry, The University of Hong Kong, Pokfulam, Hong Kong, 2The Center for Experiment, Hunan University of Commerce, Changsha, Hunan 410205, China, 3Department of Psychiatry and 4The Centre for Reproduction, Development and Growth, The University of Hong Kong, Pokfulam, Hong Kong","institution_ids":["https://openalex.org/I77396741","https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087582431","display_name":"You\u2010Qiang Song","orcid":"https://orcid.org/0000-0001-9407-2256"},"institutions":[{"id":"https://openalex.org/I77396741","display_name":"Hunan University of Technology and Business","ror":"https://ror.org/057cydn08","country_code":"CN","type":"education","lineage":["https://openalex.org/I77396741"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"You-Qiang Song","raw_affiliation_strings":["1 Department of Biochemistry, The University of Hong Kong, Pokfulam, Hong Kong, 2The Center for Experiment, Hunan University of Commerce, Changsha, Hunan 410205, China, 3Department of Psychiatry and 4The Centre for Reproduction, Development and Growth, The University of Hong Kong, Pokfulam, Hong Kong"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry, The University of Hong Kong, Pokfulam, Hong Kong, 2The Center for Experiment, Hunan University of Commerce, Changsha, Hunan 410205, China, 3Department of Psychiatry and 4The Centre for Reproduction, Development and Growth, The University of Hong Kong, Pokfulam, Hong Kong","institution_ids":["https://openalex.org/I77396741","https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5040633212"],"corresponding_institution_ids":["https://openalex.org/I77396741","https://openalex.org/I889458895"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.1283,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.80794738,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"25","issue":"11","first_page":"1449","last_page":"1450"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/international-hapmap-project","display_name":"International HapMap Project","score":0.9360238313674927},{"id":"https://openalex.org/keywords/imputation","display_name":"Imputation (statistics)","score":0.793633759021759},{"id":"https://openalex.org/keywords/merge","display_name":"Merge (version control)","score":0.6468763947486877},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.5621175765991211},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5435642004013062},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.47366198897361755},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4680217206478119},{"id":"https://openalex.org/keywords/genome-wide-association-study","display_name":"Genome-wide association study","score":0.4667271673679352},{"id":"https://openalex.org/keywords/1000-genomes-project","display_name":"1000 Genomes Project","score":0.4460919499397278},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4195650517940521},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31513261795043945},{"id":"https://openalex.org/keywords/genotyping","display_name":"Genotyping","score":0.2427634298801422},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23646628856658936},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.20412352681159973},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.1846792995929718},{"id":"https://openalex.org/keywords/missing-data","display_name":"Missing data","score":0.16530472040176392},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1568526029586792},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.11287108063697815}],"concepts":[{"id":"https://openalex.org/C177580304","wikidata":"https://www.wikidata.org/wiki/Q1147298","display_name":"International HapMap Project","level":5,"score":0.9360238313674927},{"id":"https://openalex.org/C58041806","wikidata":"https://www.wikidata.org/wiki/Q1660484","display_name":"Imputation (statistics)","level":3,"score":0.793633759021759},{"id":"https://openalex.org/C197129107","wikidata":"https://www.wikidata.org/wiki/Q1921621","display_name":"Merge (version control)","level":2,"score":0.6468763947486877},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.5621175765991211},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5435642004013062},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.47366198897361755},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4680217206478119},{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.4667271673679352},{"id":"https://openalex.org/C97425143","wikidata":"https://www.wikidata.org/wiki/Q164786","display_name":"1000 Genomes Project","level":5,"score":0.4460919499397278},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4195650517940521},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31513261795043945},{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.2427634298801422},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23646628856658936},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.20412352681159973},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.1846792995929718},{"id":"https://openalex.org/C9357733","wikidata":"https://www.wikidata.org/wiki/Q6878417","display_name":"Missing data","level":2,"score":0.16530472040176392},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1568526029586792},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.11287108063697815}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp183","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp183","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19346322","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19346322","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:hub.hku.hk:10722/58279","is_oa":false,"landing_page_url":"http://hdl.handle.net/10722/58279","pdf_url":null,"source":{"id":"https://openalex.org/S4377196271","display_name":"The HKU Scholars Hub (University of Hong Kong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I889458895","host_organization_name":"University of Hong Kong","host_organization_lineage":["https://openalex.org/I889458895"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.4099999964237213}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W2025843662","https://openalex.org/W2119067354","https://openalex.org/W2119279196","https://openalex.org/W2149791927","https://openalex.org/W2151224868"],"related_works":["https://openalex.org/W2122946544","https://openalex.org/W1989743336","https://openalex.org/W1968654496","https://openalex.org/W180383083","https://openalex.org/W2576046690","https://openalex.org/W2165194160","https://openalex.org/W1992436001","https://openalex.org/W2126214064","https://openalex.org/W2015311206","https://openalex.org/W2077116940"],"abstract_inverted_index":{"(http://bioinfo.hku.hk/iggweb)":[0],"(version":[1],"3.0).":[2]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":5}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
