{"id":"https://openalex.org/W2170479371","doi":"https://doi.org/10.1093/bioinformatics/btp180","title":"<i>Hooke</i>: an open software platform for force spectroscopy","display_name":"<i>Hooke</i>: an open software platform for force spectroscopy","publication_year":2009,"publication_date":"2009-03-31","ids":{"openalex":"https://openalex.org/W2170479371","doi":"https://doi.org/10.1093/bioinformatics/btp180","mag":"2170479371","pmid":"https://pubmed.ncbi.nlm.nih.gov/19336443"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp180","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp180","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/11/1428/48989619/bioinformatics_25_11_1428.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/11/1428/48989619/bioinformatics_25_11_1428.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025022853","display_name":"Massimo Sandal","orcid":"https://orcid.org/0000-0001-5633-3128"},"institutions":[{"id":"https://openalex.org/I94624287","display_name":"University of Twente","ror":"https://ror.org/006hf6230","country_code":"NL","type":"education","lineage":["https://openalex.org/I94624287"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Massimo Sandal","raw_affiliation_strings":["1 Department of Biochemistry \u2018G.Moruzzi\u2019, Via Irnerio 48, 40126 Bologna, Italy and 2MESA+ Institute for Nanotechnology, University of Twente, P.O. Box 217, 7500 AE Enschede, The Netherlands"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry \u2018G.Moruzzi\u2019, Via Irnerio 48, 40126 Bologna, Italy and 2MESA+ Institute for Nanotechnology, University of Twente, P.O. Box 217, 7500 AE Enschede, The Netherlands","institution_ids":["https://openalex.org/I94624287"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005812658","display_name":"Fabrizio Benedetti","orcid":"https://orcid.org/0000-0002-9959-9142"},"institutions":[{"id":"https://openalex.org/I94624287","display_name":"University of Twente","ror":"https://ror.org/006hf6230","country_code":"NL","type":"education","lineage":["https://openalex.org/I94624287"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Fabrizio Benedetti","raw_affiliation_strings":["1 Department of Biochemistry \u2018G.Moruzzi\u2019, Via Irnerio 48, 40126 Bologna, Italy and 2MESA+ Institute for Nanotechnology, University of Twente, P.O. Box 217, 7500 AE Enschede, The Netherlands"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry \u2018G.Moruzzi\u2019, Via Irnerio 48, 40126 Bologna, Italy and 2MESA+ Institute for Nanotechnology, University of Twente, P.O. Box 217, 7500 AE Enschede, The Netherlands","institution_ids":["https://openalex.org/I94624287"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067998409","display_name":"Marco Brucale","orcid":"https://orcid.org/0000-0001-7244-4389"},"institutions":[{"id":"https://openalex.org/I94624287","display_name":"University of Twente","ror":"https://ror.org/006hf6230","country_code":"NL","type":"education","lineage":["https://openalex.org/I94624287"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Marco Brucale","raw_affiliation_strings":["1 Department of Biochemistry \u2018G.Moruzzi\u2019, Via Irnerio 48, 40126 Bologna, Italy and 2MESA+ Institute for Nanotechnology, University of Twente, P.O. Box 217, 7500 AE Enschede, The Netherlands"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry \u2018G.Moruzzi\u2019, Via Irnerio 48, 40126 Bologna, Italy and 2MESA+ Institute for Nanotechnology, University of Twente, P.O. Box 217, 7500 AE Enschede, The Netherlands","institution_ids":["https://openalex.org/I94624287"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085011641","display_name":"Alberto G\u00f3mez-Casado","orcid":null},"institutions":[{"id":"https://openalex.org/I94624287","display_name":"University of Twente","ror":"https://ror.org/006hf6230","country_code":"NL","type":"education","lineage":["https://openalex.org/I94624287"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Alberto Gomez-Casado","raw_affiliation_strings":["1 Department of Biochemistry \u2018G.Moruzzi\u2019, Via Irnerio 48, 40126 Bologna, Italy and 2MESA+ Institute for Nanotechnology, University of Twente, P.O. Box 217, 7500 AE Enschede, The Netherlands"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry \u2018G.Moruzzi\u2019, Via Irnerio 48, 40126 Bologna, Italy and 2MESA+ Institute for Nanotechnology, University of Twente, P.O. Box 217, 7500 AE Enschede, The Netherlands","institution_ids":["https://openalex.org/I94624287"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036394652","display_name":"Bruno Samor\u0131\u0300","orcid":null},"institutions":[{"id":"https://openalex.org/I94624287","display_name":"University of Twente","ror":"https://ror.org/006hf6230","country_code":"NL","type":"education","lineage":["https://openalex.org/I94624287"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Bruno Samor\u00ec","raw_affiliation_strings":["1 Department of Biochemistry \u2018G.Moruzzi\u2019, Via Irnerio 48, 40126 Bologna, Italy and 2MESA+ Institute for Nanotechnology, University of Twente, P.O. Box 217, 7500 AE Enschede, The Netherlands"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry \u2018G.Moruzzi\u2019, Via Irnerio 48, 40126 Bologna, Italy and 2MESA+ Institute for Nanotechnology, University of Twente, P.O. Box 217, 7500 AE Enschede, The Netherlands","institution_ids":["https://openalex.org/I94624287"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5025022853"],"corresponding_institution_ids":["https://openalex.org/I94624287"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.5118,"has_fulltext":false,"cited_by_count":30,"citation_normalized_percentile":{"value":0.89734158,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"25","issue":"11","first_page":"1428","last_page":"1430"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10923","display_name":"Force Microscopy Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10923","display_name":"Force Microscopy Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10913","display_name":"Molecular Junctions and Nanostructures","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11449","display_name":"Mechanical and Optical Resonators","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.7653536796569824},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.7363372445106506},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.706693172454834},{"id":"https://openalex.org/keywords/extensibility","display_name":"Extensibility","score":0.6390447616577148},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6086931228637695},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6012517809867859},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.5833732485771179},{"id":"https://openalex.org/keywords/force-spectroscopy","display_name":"Force spectroscopy","score":0.5415241718292236},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.49536144733428955},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.48775845766067505},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4453733563423157},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3995318114757538},{"id":"https://openalex.org/keywords/atomic-force-microscopy","display_name":"Atomic force microscopy","score":0.33630532026290894},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2934853434562683},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2897782325744629},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.11161521077156067},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.1018449068069458}],"concepts":[{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.7653536796569824},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.7363372445106506},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.706693172454834},{"id":"https://openalex.org/C32833848","wikidata":"https://www.wikidata.org/wiki/Q4115054","display_name":"Extensibility","level":2,"score":0.6390447616577148},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6086931228637695},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6012517809867859},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.5833732485771179},{"id":"https://openalex.org/C119473381","wikidata":"https://www.wikidata.org/wiki/Q49298","display_name":"Force spectroscopy","level":3,"score":0.5415241718292236},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.49536144733428955},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.48775845766067505},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4453733563423157},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3995318114757538},{"id":"https://openalex.org/C102951782","wikidata":"https://www.wikidata.org/wiki/Q49295","display_name":"Atomic force microscopy","level":2,"score":0.33630532026290894},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2934853434562683},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2897782325744629},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.11161521077156067},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.1018449068069458}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018625","descriptor_name":"Microscopy, Atomic Force","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018625","descriptor_name":"Microscopy, Atomic Force","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018625","descriptor_name":"Microscopy, Atomic Force","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp180","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp180","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/11/1428/48989619/bioinformatics_25_11_1428.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19336443","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19336443","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:cris.unibo.it:11585/78056","is_oa":false,"landing_page_url":"http://hdl.handle.net/11585/78056","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp180","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp180","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/11/1428/48989619/bioinformatics_25_11_1428.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4399999976158142,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2170479371.pdf","grobid_xml":"https://content.openalex.org/works/W2170479371.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W67038896","https://openalex.org/W1569994690","https://openalex.org/W1974364221","https://openalex.org/W1982922343","https://openalex.org/W1993114893","https://openalex.org/W2026658342","https://openalex.org/W2028208814","https://openalex.org/W2036475903","https://openalex.org/W2044834140","https://openalex.org/W2046106288","https://openalex.org/W2047712649","https://openalex.org/W2049817931","https://openalex.org/W2050138321","https://openalex.org/W2056253643","https://openalex.org/W2066423128","https://openalex.org/W2089518281","https://openalex.org/W2090807504","https://openalex.org/W2104559182","https://openalex.org/W2137394992","https://openalex.org/W2155550415","https://openalex.org/W2163217649","https://openalex.org/W2171885962","https://openalex.org/W3104654034"],"related_works":["https://openalex.org/W3022321974","https://openalex.org/W2129419898","https://openalex.org/W4301292435","https://openalex.org/W4300044118","https://openalex.org/W4226330077","https://openalex.org/W2567010819","https://openalex.org/W4320855360","https://openalex.org/W2113128227","https://openalex.org/W2904462035","https://openalex.org/W2061990085"],"abstract_inverted_index":{"Software":[0],"and":[1],"documentation":[2],"are":[3],"available":[4],"at":[5],"(http://code.google.com/p/hooke).":[6],"Hooke":[7],"is":[8],"a":[9],"free":[10],"software":[11],"under":[12],"the":[13],"GNU":[14],"Lesser":[15],"General":[16],"Public":[17],"License.":[18]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
