{"id":"https://openalex.org/W2104655345","doi":"https://doi.org/10.1093/bioinformatics/btp173","title":"GetBonNie for building, analyzing and sharing rule-based models","display_name":"GetBonNie for building, analyzing and sharing rule-based models","publication_year":2009,"publication_date":"2009-03-25","ids":{"openalex":"https://openalex.org/W2104655345","doi":"https://doi.org/10.1093/bioinformatics/btp173","mag":"2104655345","pmid":"https://pubmed.ncbi.nlm.nih.gov/19321734"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp173","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp173","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/11/1457/48990216/bioinformatics_25_11_1457.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/11/1457/48990216/bioinformatics_25_11_1457.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043402436","display_name":"Bin Hu","orcid":"https://orcid.org/0000-0002-0278-8466"},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]},{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bin Hu","raw_affiliation_strings":["1 Department of Biology, University of New Mexico, Albuquerque, NM 87131, 2Theoretical Biology and Biophysics Group, Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, 3Department of Computer Science, University of New Mexico, Albuquerque, NM 87131, 4Department of Computational Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, 5Computational Biology Division, Translational Genomics Research Institute, Phoenix, AZ 85004 and 6Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, NM 87545, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biology, University of New Mexico, Albuquerque, NM 87131, 2Theoretical Biology and Biophysics Group, Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, 3Department of Computer Science, University of New Mexico, Albuquerque, NM 87131, 4Department of Computational Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, 5Computational Biology Division, Translational Genomics Research Institute, Phoenix, AZ 85004 and 6Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I1343871089","https://openalex.org/I1284308235","https://openalex.org/I169521973","https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059954596","display_name":"G. Matthew Fricke","orcid":"https://orcid.org/0000-0002-4466-8649"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]},{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Matthew Fricke","raw_affiliation_strings":["1 Department of Biology, University of New Mexico, Albuquerque, NM 87131, 2Theoretical Biology and Biophysics Group, Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, 3Department of Computer Science, University of New Mexico, Albuquerque, NM 87131, 4Department of Computational Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, 5Computational Biology Division, Translational Genomics Research Institute, Phoenix, AZ 85004 and 6Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, NM 87545, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biology, University of New Mexico, Albuquerque, NM 87131, 2Theoretical Biology and Biophysics Group, Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, 3Department of Computer Science, University of New Mexico, Albuquerque, NM 87131, 4Department of Computational Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, 5Computational Biology Division, Translational Genomics Research Institute, Phoenix, AZ 85004 and 6Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I1343871089","https://openalex.org/I1284308235","https://openalex.org/I169521973","https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020336186","display_name":"James R. Faeder","orcid":"https://orcid.org/0000-0001-8127-609X"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]},{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James R. Faeder","raw_affiliation_strings":["1 Department of Biology, University of New Mexico, Albuquerque, NM 87131, 2Theoretical Biology and Biophysics Group, Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, 3Department of Computer Science, University of New Mexico, Albuquerque, NM 87131, 4Department of Computational Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, 5Computational Biology Division, Translational Genomics Research Institute, Phoenix, AZ 85004 and 6Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, NM 87545, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biology, University of New Mexico, Albuquerque, NM 87131, 2Theoretical Biology and Biophysics Group, Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, 3Department of Computer Science, University of New Mexico, Albuquerque, NM 87131, 4Department of Computational Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, 5Computational Biology Division, Translational Genomics Research Institute, Phoenix, AZ 85004 and 6Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I1343871089","https://openalex.org/I1284308235","https://openalex.org/I169521973","https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064022214","display_name":"Richard G. Posner","orcid":"https://orcid.org/0000-0002-0489-9397"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]},{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]},{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard G. Posner","raw_affiliation_strings":["1 Department of Biology, University of New Mexico, Albuquerque, NM 87131, 2Theoretical Biology and Biophysics Group, Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, 3Department of Computer Science, University of New Mexico, Albuquerque, NM 87131, 4Department of Computational Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, 5Computational Biology Division, Translational Genomics Research Institute, Phoenix, AZ 85004 and 6Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, NM 87545, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biology, University of New Mexico, Albuquerque, NM 87131, 2Theoretical Biology and Biophysics Group, Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, 3Department of Computer Science, University of New Mexico, Albuquerque, NM 87131, 4Department of Computational Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, 5Computational Biology Division, Translational Genomics Research Institute, Phoenix, AZ 85004 and 6Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I1343871089","https://openalex.org/I1284308235","https://openalex.org/I169521973","https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016126519","display_name":"William S. Hlavacek","orcid":"https://orcid.org/0000-0003-4383-8711"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]},{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William S. Hlavacek","raw_affiliation_strings":["1 Department of Biology, University of New Mexico, Albuquerque, NM 87131, 2Theoretical Biology and Biophysics Group, Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, 3Department of Computer Science, University of New Mexico, Albuquerque, NM 87131, 4Department of Computational Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, 5Computational Biology Division, Translational Genomics Research Institute, Phoenix, AZ 85004 and 6Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, NM 87545, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biology, University of New Mexico, Albuquerque, NM 87131, 2Theoretical Biology and Biophysics Group, Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, 3Department of Computer Science, University of New Mexico, Albuquerque, NM 87131, 4Department of Computational Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, 5Computational Biology Division, Translational Genomics Research Institute, Phoenix, AZ 85004 and 6Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I1343871089","https://openalex.org/I1284308235","https://openalex.org/I169521973","https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5043402436"],"corresponding_institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I1343871089","https://openalex.org/I169521973","https://openalex.org/I170201317"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0735,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.76470203,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"25","issue":"11","first_page":"1457","last_page":"1460"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8277971744537354},{"id":"https://openalex.org/keywords/java-applet","display_name":"Java applet","score":0.6043667793273926},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5986772775650024},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.49451133608818054},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.49139443039894104},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.4853774309158325},{"id":"https://openalex.org/keywords/on-the-fly","display_name":"On the fly","score":0.4576586186885834},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4018977880477905},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3693477511405945},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3219865560531616},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.32196927070617676},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.17101290822029114}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8277971744537354},{"id":"https://openalex.org/C15524039","wikidata":"https://www.wikidata.org/wiki/Q865817","display_name":"Java applet","level":3,"score":0.6043667793273926},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5986772775650024},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.49451133608818054},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.49139443039894104},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.4853774309158325},{"id":"https://openalex.org/C2781020372","wikidata":"https://www.wikidata.org/wiki/Q533093","display_name":"On the fly","level":2,"score":0.4576586186885834},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4018977880477905},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3693477511405945},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3219865560531616},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.32196927070617676},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.17101290822029114}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp173","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp173","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/11/1457/48990216/bioinformatics_25_11_1457.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19321734","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19321734","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2682519","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2682519","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp173","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp173","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/11/1457/48990216/bioinformatics_25_11_1457.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2104655345.pdf","grobid_xml":"https://content.openalex.org/works/W2104655345.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W323766208","https://openalex.org/W1977290213","https://openalex.org/W2001914359","https://openalex.org/W2020561965","https://openalex.org/W2069941324","https://openalex.org/W2082874501","https://openalex.org/W2099693848","https://openalex.org/W2107062718","https://openalex.org/W2144063122","https://openalex.org/W2150908245","https://openalex.org/W2151251638","https://openalex.org/W2163493106","https://openalex.org/W2165714871","https://openalex.org/W2169193349","https://openalex.org/W2175715045","https://openalex.org/W2442855540","https://openalex.org/W2611943439","https://openalex.org/W4238387639","https://openalex.org/W4251538155"],"related_works":["https://openalex.org/W2344780600","https://openalex.org/W2948473269","https://openalex.org/W2473435377","https://openalex.org/W2096381758","https://openalex.org/W2028753068","https://openalex.org/W650470976","https://openalex.org/W626257650","https://openalex.org/W2914459301","https://openalex.org/W4242879402","https://openalex.org/W2494325768"],"abstract_inverted_index":{"GetBonNie":[0],"is":[1],"free":[2],"at":[3],"(http://getbonnie.org).":[4]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}