{"id":"https://openalex.org/W2129050851","doi":"https://doi.org/10.1093/bioinformatics/btp165","title":"BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server","display_name":"BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server","publication_year":2009,"publication_date":"2009-03-23","ids":{"openalex":"https://openalex.org/W2129050851","doi":"https://doi.org/10.1093/bioinformatics/btp165","mag":"2129050851","pmid":"https://pubmed.ncbi.nlm.nih.gov/19307241"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp165","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp165","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/11/1438/48989954/bioinformatics_25_11_1438.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/11/1438/48989954/bioinformatics_25_11_1438.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053975788","display_name":"Paul Geeleher","orcid":"https://orcid.org/0000-0002-5128-0087"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Paul Geeleher","raw_affiliation_strings":["1 School of Mathematics, Statistics and Applied Mathematics, National University of Ireland, 2Animal Production Research Centre, Teagasc, Mellows Campus, Athenry, Co. Galway and 3National Centre for Biomedical Engineering Science, National University of Ireland, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"1 School of Mathematics, Statistics and Applied Mathematics, National University of Ireland, 2Animal Production Research Centre, Teagasc, Mellows Campus, Athenry, Co. Galway and 3National Centre for Biomedical Engineering Science, National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111896457","display_name":"Dermot G. Morris","orcid":null},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Dermot Morris","raw_affiliation_strings":["1 School of Mathematics, Statistics and Applied Mathematics, National University of Ireland, 2Animal Production Research Centre, Teagasc, Mellows Campus, Athenry, Co. Galway and 3National Centre for Biomedical Engineering Science, National University of Ireland, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"1 School of Mathematics, Statistics and Applied Mathematics, National University of Ireland, 2Animal Production Research Centre, Teagasc, Mellows Campus, Athenry, Co. Galway and 3National Centre for Biomedical Engineering Science, National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044472090","display_name":"John Hinde","orcid":"https://orcid.org/0000-0001-6507-5204"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"John P. Hinde","raw_affiliation_strings":["1 School of Mathematics, Statistics and Applied Mathematics, National University of Ireland, 2Animal Production Research Centre, Teagasc, Mellows Campus, Athenry, Co. Galway and 3National Centre for Biomedical Engineering Science, National University of Ireland, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"1 School of Mathematics, Statistics and Applied Mathematics, National University of Ireland, 2Animal Production Research Centre, Teagasc, Mellows Campus, Athenry, Co. Galway and 3National Centre for Biomedical Engineering Science, National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035389230","display_name":"Aaron Golden","orcid":"https://orcid.org/0000-0001-8208-4292"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Aaron Golden","raw_affiliation_strings":["1 School of Mathematics, Statistics and Applied Mathematics, National University of Ireland, 2Animal Production Research Centre, Teagasc, Mellows Campus, Athenry, Co. Galway and 3National Centre for Biomedical Engineering Science, National University of Ireland, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"1 School of Mathematics, Statistics and Applied Mathematics, National University of Ireland, 2Animal Production Research Centre, Teagasc, Mellows Campus, Athenry, Co. Galway and 3National Centre for Biomedical Engineering Science, National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5053975788"],"corresponding_institution_ids":["https://openalex.org/I188760350"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3937,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.6324299,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"25","issue":"11","first_page":"1438","last_page":"1439"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.7974416017532349},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7729197144508362},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.634554386138916},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6171830296516418},{"id":"https://openalex.org/keywords/upgrade","display_name":"Upgrade","score":0.48180288076400757},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4751315414905548},{"id":"https://openalex.org/keywords/os-x","display_name":"OS X","score":0.4685669243335724},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.436550498008728},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.42424172163009644},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.4177685081958771},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.41575270891189575},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.34450286626815796},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.33299508690834045},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.24223944544792175}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.7974416017532349},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7729197144508362},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.634554386138916},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6171830296516418},{"id":"https://openalex.org/C2780615140","wikidata":"https://www.wikidata.org/wiki/Q920419","display_name":"Upgrade","level":2,"score":0.48180288076400757},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4751315414905548},{"id":"https://openalex.org/C515153823","wikidata":"https://www.wikidata.org/wiki/Q14116","display_name":"OS X","level":3,"score":0.4685669243335724},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.436550498008728},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.42424172163009644},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.4177685081958771},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.41575270891189575},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.34450286626815796},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.33299508690834045},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.24223944544792175},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp165","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp165","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/11/1438/48989954/bioinformatics_25_11_1438.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19307241","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19307241","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:aran.library.nuigalway.ie/:10379/11601","is_oa":false,"landing_page_url":"http://hdl.handle.net/10379/11601","pdf_url":null,"source":{"id":"https://openalex.org/S4377196322","display_name":"ARAN (University of Galway Research Repository) (Ollscoil na Gaillimhe \u2013 University of Galway)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I188760350","host_organization_name":"Ollscoil na Gaillimhe \u2013 University of Galway","host_organization_lineage":["https://openalex.org/I188760350"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp165","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp165","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/11/1438/48989954/bioinformatics_25_11_1438.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6499999761581421,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320847","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38"},{"id":"https://openalex.org/F4320320849","display_name":"Teagasc","ror":"https://ror.org/03sx84n71"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2129050851.pdf","grobid_xml":"https://content.openalex.org/works/W2129050851.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1533335653","https://openalex.org/W1546952499","https://openalex.org/W2099547895","https://openalex.org/W2100637689","https://openalex.org/W2109972881","https://openalex.org/W2111331733","https://openalex.org/W2122598723","https://openalex.org/W2130410032","https://openalex.org/W2160697532","https://openalex.org/W2162871532","https://openalex.org/W6679628609"],"related_works":["https://openalex.org/W2151651283","https://openalex.org/W3118004748","https://openalex.org/W3117086625","https://openalex.org/W2170830174","https://openalex.org/W2164765928","https://openalex.org/W2234559012","https://openalex.org/W2792006949","https://openalex.org/W2141985175","https://openalex.org/W2118770646","https://openalex.org/W2098339479"],"abstract_inverted_index":{"BioconductorBuntu":[0],"is":[1],"available":[2],"for":[3],"download":[4],"under":[5],"a":[6,15],"creative":[7],"commons":[8],"license":[9],"along":[10],"with":[11],"additional":[12],"documentation":[13],"and":[14],"tutorial":[16],"from":[17],"(http://bioinf.nuigalway.ie).":[18]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
