{"id":"https://openalex.org/W2133626798","doi":"https://doi.org/10.1093/bioinformatics/btp161","title":"Identification of ribosomal RNA genes in metagenomic fragments","display_name":"Identification of ribosomal RNA genes in metagenomic fragments","publication_year":2009,"publication_date":"2009-04-03","ids":{"openalex":"https://openalex.org/W2133626798","doi":"https://doi.org/10.1093/bioinformatics/btp161","mag":"2133626798","pmid":"https://pubmed.ncbi.nlm.nih.gov/19346323"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp161","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp161","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2677747","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065049835","display_name":"Ying Huang","orcid":"https://orcid.org/0000-0002-2806-2874"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Ying Huang","raw_affiliation_strings":["California Institute for Telecommunications and Information Technology, University of California, La Jolla, San Diego, California, USA"],"affiliations":[{"raw_affiliation_string":"California Institute for Telecommunications and Information Technology, University of California, La Jolla, San Diego, California, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028247582","display_name":"Paul Gilna","orcid":"https://orcid.org/0000-0002-6542-0191"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Paul Gilna","raw_affiliation_strings":["California Institute for Telecommunications and Information Technology, University of California, La Jolla, San Diego, California, USA"],"affiliations":[{"raw_affiliation_string":"California Institute for Telecommunications and Information Technology, University of California, La Jolla, San Diego, California, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027145422","display_name":"Weizhong Li","orcid":"https://orcid.org/0000-0003-1804-9403"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Weizhong Li","raw_affiliation_strings":["California Institute for Telecommunications and Information Technology, University of California, La Jolla, San Diego, California, USA"],"affiliations":[{"raw_affiliation_string":"California Institute for Telecommunications and Information Technology, University of California, La Jolla, San Diego, California, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5065049835"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.3596,"has_fulltext":false,"cited_by_count":213,"citation_normalized_percentile":{"value":0.9292232,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"25","issue":"10","first_page":"1338","last_page":"1340"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8588128685951233},{"id":"https://openalex.org/keywords/ribosomal-rna","display_name":"Ribosomal RNA","score":0.7688455581665039},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6348186135292053},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6208315491676331},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6060677170753479},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5643208026885986},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4670162796974182},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.46133315563201904},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.057499438524246216}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8588128685951233},{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.7688455581665039},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6348186135292053},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6208315491676331},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6060677170753479},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5643208026885986},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4670162796974182},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.46133315563201904},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.057499438524246216}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp161","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp161","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19346323","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19346323","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2677747","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2677747","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:2677747","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2677747","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.47999998927116394,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306202","display_name":"Gordon and Betty Moore Foundation","ror":"https://ror.org/006wxqw41"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1998077837","https://openalex.org/W2001031283","https://openalex.org/W2025305823","https://openalex.org/W2045843097","https://openalex.org/W2091922579","https://openalex.org/W2113601822","https://openalex.org/W2125038106","https://openalex.org/W2128599049","https://openalex.org/W2130669817","https://openalex.org/W2135261987","https://openalex.org/W2151831732","https://openalex.org/W2158714788"],"related_works":["https://openalex.org/W2210738511","https://openalex.org/W2002887047","https://openalex.org/W2474302342","https://openalex.org/W2411890926","https://openalex.org/W1910109602","https://openalex.org/W4297131566","https://openalex.org/W2017364432","https://openalex.org/W2030932923","https://openalex.org/W2080583581","https://openalex.org/W4300267380"],"abstract_inverted_index":{"Supplementary":[0],"files,":[1],"scripts":[2],"and":[3],"sample":[4],"data":[5],"are":[6],"available":[7],"at":[8],"http://tools.camera.calit2.net/camera/meta_rna.":[9]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":18},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":22},{"year":2016,"cited_by_count":21},{"year":2015,"cited_by_count":16},{"year":2014,"cited_by_count":22},{"year":2013,"cited_by_count":15},{"year":2012,"cited_by_count":9}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
