{"id":"https://openalex.org/W2107648570","doi":"https://doi.org/10.1093/bioinformatics/btp135","title":"Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information","display_name":"Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information","publication_year":2009,"publication_date":"2009-03-10","ids":{"openalex":"https://openalex.org/W2107648570","doi":"https://doi.org/10.1093/bioinformatics/btp135","mag":"2107648570","pmid":"https://pubmed.ncbi.nlm.nih.gov/19276150"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp135","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp135","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/9/1125/532215/btp135.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/9/1125/532215/btp135.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000071168","display_name":"Cristina Marino\u2010Buslje","orcid":"https://orcid.org/0000-0002-6564-1920"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I24354313","display_name":"University of Buenos Aires","ror":"https://ror.org/0081fs513","country_code":"AR","type":"education","lineage":["https://openalex.org/I24354313"]},{"id":"https://openalex.org/I4210149401","display_name":"Instituto de Qu\u00edmica y Fisicoqu\u00edmica Biol\u00f3gicas","ror":"https://ror.org/0469ejq24","country_code":"AR","type":"facility","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4210149401","https://openalex.org/I4387155568"]}],"countries":["AR","DK"],"is_corresponding":true,"raw_author_name":"Cristina Marino Buslje","raw_affiliation_strings":["1 Department of Biological Chemistry and Institute of Biochemistry and Biophysics (IQUIFIB), School of Pharmacy and Biochemistry, University of Buenos Aires, Jun\u00edn 956, 1113 Buenos Aires, Argentina and 2Centre for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, Building 208, DK-2800 Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"1 Department of Biological Chemistry and Institute of Biochemistry and Biophysics (IQUIFIB), School of Pharmacy and Biochemistry, University of Buenos Aires, Jun\u00edn 956, 1113 Buenos Aires, Argentina and 2Centre for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, Building 208, DK-2800 Lyngby, Denmark","institution_ids":["https://openalex.org/I24354313","https://openalex.org/I4210149401","https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012124535","display_name":"Javier Santos","orcid":"https://orcid.org/0000-0002-1140-8234"},"institutions":[{"id":"https://openalex.org/I24354313","display_name":"University of Buenos Aires","ror":"https://ror.org/0081fs513","country_code":"AR","type":"education","lineage":["https://openalex.org/I24354313"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I4210149401","display_name":"Instituto de Qu\u00edmica y Fisicoqu\u00edmica Biol\u00f3gicas","ror":"https://ror.org/0469ejq24","country_code":"AR","type":"facility","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4210149401","https://openalex.org/I4387155568"]}],"countries":["AR","DK"],"is_corresponding":false,"raw_author_name":"Javier Santos","raw_affiliation_strings":["1 Department of Biological Chemistry and Institute of Biochemistry and Biophysics (IQUIFIB), School of Pharmacy and Biochemistry, University of Buenos Aires, Jun\u00edn 956, 1113 Buenos Aires, Argentina and 2Centre for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, Building 208, DK-2800 Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"1 Department of Biological Chemistry and Institute of Biochemistry and Biophysics (IQUIFIB), School of Pharmacy and Biochemistry, University of Buenos Aires, Jun\u00edn 956, 1113 Buenos Aires, Argentina and 2Centre for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, Building 208, DK-2800 Lyngby, Denmark","institution_ids":["https://openalex.org/I24354313","https://openalex.org/I4210149401","https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070591317","display_name":"Jos\u00e9 M. Delfino","orcid":"https://orcid.org/0009-0002-0140-2899"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I4210149401","display_name":"Instituto de Qu\u00edmica y Fisicoqu\u00edmica Biol\u00f3gicas","ror":"https://ror.org/0469ejq24","country_code":"AR","type":"facility","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4210149401","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I24354313","display_name":"University of Buenos Aires","ror":"https://ror.org/0081fs513","country_code":"AR","type":"education","lineage":["https://openalex.org/I24354313"]}],"countries":["AR","DK"],"is_corresponding":false,"raw_author_name":"Jose Maria Delfino","raw_affiliation_strings":["1 Department of Biological Chemistry and Institute of Biochemistry and Biophysics (IQUIFIB), School of Pharmacy and Biochemistry, University of Buenos Aires, Jun\u00edn 956, 1113 Buenos Aires, Argentina and 2Centre for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, Building 208, DK-2800 Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"1 Department of Biological Chemistry and Institute of Biochemistry and Biophysics (IQUIFIB), School of Pharmacy and Biochemistry, University of Buenos Aires, Jun\u00edn 956, 1113 Buenos Aires, Argentina and 2Centre for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, Building 208, DK-2800 Lyngby, Denmark","institution_ids":["https://openalex.org/I24354313","https://openalex.org/I4210149401","https://openalex.org/I96673099"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076702280","display_name":"Morten Nielsen","orcid":"https://orcid.org/0000-0001-7885-4311"},"institutions":[{"id":"https://openalex.org/I4210149401","display_name":"Instituto de Qu\u00edmica y Fisicoqu\u00edmica Biol\u00f3gicas","ror":"https://ror.org/0469ejq24","country_code":"AR","type":"facility","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4210149401","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]},{"id":"https://openalex.org/I24354313","display_name":"University of Buenos Aires","ror":"https://ror.org/0081fs513","country_code":"AR","type":"education","lineage":["https://openalex.org/I24354313"]}],"countries":["AR","DK"],"is_corresponding":false,"raw_author_name":"Morten Nielsen","raw_affiliation_strings":["1 Department of Biological Chemistry and Institute of Biochemistry and Biophysics (IQUIFIB), School of Pharmacy and Biochemistry, University of Buenos Aires, Jun\u00edn 956, 1113 Buenos Aires, Argentina and 2Centre for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, Building 208, DK-2800 Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"1 Department of Biological Chemistry and Institute of Biochemistry and Biophysics (IQUIFIB), School of Pharmacy and Biochemistry, University of Buenos Aires, Jun\u00edn 956, 1113 Buenos Aires, Argentina and 2Centre for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, Building 208, DK-2800 Lyngby, Denmark","institution_ids":["https://openalex.org/I24354313","https://openalex.org/I4210149401","https://openalex.org/I96673099"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5000071168"],"corresponding_institution_ids":["https://openalex.org/I24354313","https://openalex.org/I4210149401","https://openalex.org/I96673099"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.37,"has_fulltext":true,"cited_by_count":133,"citation_normalized_percentile":{"value":0.92901538,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"25","issue":"9","first_page":"1125","last_page":"1131"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/weighting","display_name":"Weighting","score":0.7618372440338135},{"id":"https://openalex.org/keywords/redundancy","display_name":"Redundancy (engineering)","score":0.6010160446166992},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5995702743530273},{"id":"https://openalex.org/keywords/predictability","display_name":"Predictability","score":0.5278156995773315},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5227404236793518},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4972720444202423},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4961293637752533},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.4941556751728058},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.4804670214653015},{"id":"https://openalex.org/keywords/mutual-information","display_name":"Mutual information","score":0.4387267231941223},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.43051183223724365},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4253268837928772},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42401227355003357},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3899518847465515},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34236472845077515},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3039763271808624},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2768273949623108},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.26877889037132263},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1997440755367279},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14915579557418823},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.08526310324668884}],"concepts":[{"id":"https://openalex.org/C183115368","wikidata":"https://www.wikidata.org/wiki/Q856577","display_name":"Weighting","level":2,"score":0.7618372440338135},{"id":"https://openalex.org/C152124472","wikidata":"https://www.wikidata.org/wiki/Q1204361","display_name":"Redundancy (engineering)","level":2,"score":0.6010160446166992},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5995702743530273},{"id":"https://openalex.org/C197640229","wikidata":"https://www.wikidata.org/wiki/Q2534066","display_name":"Predictability","level":2,"score":0.5278156995773315},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5227404236793518},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4972720444202423},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4961293637752533},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.4941556751728058},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.4804670214653015},{"id":"https://openalex.org/C152139883","wikidata":"https://www.wikidata.org/wiki/Q252973","display_name":"Mutual information","level":2,"score":0.4387267231941223},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.43051183223724365},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4253268837928772},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42401227355003357},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3899518847465515},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34236472845077515},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3039763271808624},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2768273949623108},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.26877889037132263},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1997440755367279},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14915579557418823},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08526310324668884},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btp135","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp135","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/9/1125/532215/btp135.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19276150","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19276150","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2672635","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2672635","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/b1aa91c7-0714-4d95-a108-47661bc09a18","is_oa":false,"landing_page_url":"https://orbit.dtu.dk/en/publications/b1aa91c7-0714-4d95-a108-47661bc09a18","pdf_url":null,"source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Buslje , C M , Santos , J , Delfino , J M &amp; Nielsen , M 2009 , ' Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information ' , Bioinformatics , vol. 25 , no. 9 , pp. 1125-1131 . https://doi.org/10.1093/bioinformatics/btp135","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp135","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp135","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/9/1125/532215/btp135.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3892870697","display_name":null,"funder_award_id":"ANPCyT","funder_id":"https://openalex.org/F4320321594","funder_display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas"},{"id":"https://openalex.org/G7378882120","display_name":null,"funder_award_id":"CONICET","funder_id":"https://openalex.org/F4320334832","funder_display_name":"Agencia Nacional de Promoci\u00f3n Cient\u00edfica y Tecnol\u00f3gica"},{"id":"https://openalex.org/G7752622008","display_name":null,"funder_award_id":"HHSN266200400025C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320321594","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334832","display_name":"Agencia Nacional de Promoci\u00f3n Cient\u00edfica y Tecnol\u00f3gica","ror":"https://ror.org/03stxzb56"},{"id":"https://openalex.org/F4320335478","display_name":"Secretar\u00eda de Ciencia y T\u00e9cnica, Universidad de Buenos Aires","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2107648570.pdf","grobid_xml":"https://content.openalex.org/works/W2107648570.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1267321744","https://openalex.org/W1533371356","https://openalex.org/W1986049071","https://openalex.org/W1990748933","https://openalex.org/W2005080874","https://openalex.org/W2023346730","https://openalex.org/W2085075228","https://openalex.org/W2092006899","https://openalex.org/W2092189458","https://openalex.org/W2096279929","https://openalex.org/W2099111195","https://openalex.org/W2100271852","https://openalex.org/W2103498243","https://openalex.org/W2111438638","https://openalex.org/W2115737495","https://openalex.org/W2131848438","https://openalex.org/W2137995988","https://openalex.org/W2142319534","https://openalex.org/W2146891463","https://openalex.org/W2147693153","https://openalex.org/W2153819533","https://openalex.org/W2154643316","https://openalex.org/W2158539318","https://openalex.org/W2158714788","https://openalex.org/W6675132646"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2111937814","https://openalex.org/W2162923930","https://openalex.org/W1482324242","https://openalex.org/W2133116680","https://openalex.org/W2091678889","https://openalex.org/W2029514038","https://openalex.org/W2804480386","https://openalex.org/W3186624150","https://openalex.org/W65850283"],"abstract_inverted_index":{"After":[0],"evaluating":[1],"two":[2],"current":[3,148],"methods,":[4],"we":[5,115,141,157],"demonstrate":[6,116],"how":[7,117],"the":[8,35,62,65,100,147,166],"use":[9,87],"of":[10,25,37,46,88,108,121,168],"sequence-weighting":[11,82],"techniques":[12],"to":[13,20,90,97,133,150],"reduce":[14],"sequence":[15,30,56],"redundancy":[16],"and":[17,70,83,103,153,156,172],"low-count":[18,84],"corrections":[19],"account":[21],"for":[22,105],"small":[23],"number":[24],"observations":[26],"in":[27,48,61,128,131],"limited":[28],"size":[29],"families,":[31],"can":[32],"significantly":[33,98],"improve":[34,99],"predictability":[36],"MI.":[38],"The":[39,58,75,86],"evaluation":[40],"is":[41,95,126],"made":[42],"on":[43,54,146,165],"large":[44],"sets":[45],"both":[47],"silico-generated":[49],"alignments":[50],"as":[51,53],"well":[52],"biological":[55],"data.":[57],"methods":[59],"included":[60],"analysis":[63],"are":[64],"APC":[66,80],"(average":[67],"product":[68],"correction)":[69],"RCW":[71],"(row-column":[72],"weighting)":[73],"methods.":[74],"best":[76],"performing":[77],"method":[78],"was":[79],"including":[81],"corrections.":[85],"sequence-permutations":[89],"calculate":[91],"a":[92,118,143],"MI":[93],"rescaling":[94],"shown":[96],"prediction":[101],"accuracy":[102],"allows":[104],"direct":[106],"comparison":[107],"information":[109],"values":[110],"across":[111],"protein":[112,169],"families.":[113],"Finally,":[114],"lower":[119],"bound":[120],"400":[122],"sequences":[123],"<62%":[124],"identical":[125],"needed":[127],"an":[129],"MSA":[130],"order":[132],"achieve":[134,142],"meaningful":[135],"predictive":[136],"performances.":[137],"With":[138],"our":[139],"contribution,":[140],"noteworthy":[144],"improvement":[145],"procedures":[149],"determine":[151],"coevolution":[152],"residue":[154],"contacts,":[155],"believe":[158],"that":[159],"this":[160],"will":[161],"have":[162],"potential":[163],"impacts":[164],"understanding":[167],"structure,":[170],"function":[171],"folding.":[173]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":33},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
