{"id":"https://openalex.org/W2145317788","doi":"https://doi.org/10.1093/bioinformatics/btp131","title":"A consistency-based consensus algorithm for <i>de novo</i> and reference-guided sequence assembly of short reads","display_name":"A consistency-based consensus algorithm for <i>de novo</i> and reference-guided sequence assembly of short reads","publication_year":2009,"publication_date":"2009-03-05","ids":{"openalex":"https://openalex.org/W2145317788","doi":"https://doi.org/10.1093/bioinformatics/btp131","mag":"2145317788","pmid":"https://pubmed.ncbi.nlm.nih.gov/19269990"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp131","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp131","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/9/1118/48984498/bioinformatics_25_9_1118.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/9/1118/48984498/bioinformatics_25_9_1118.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038740400","display_name":"Tobias Rausch","orcid":"https://orcid.org/0000-0001-5773-5620"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tobias Rausch","raw_affiliation_strings":["1 International Max Planck Research School for Computational Biology and Scientific Computing, Ihnestr. 63 - 73, 2Algorithmische Bioinformatik, Institut f\u00fcr Informatik, Takustr. 9, 14195 Berlin, Germany and 3J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"1 International Max Planck Research School for Computational Biology and Scientific Computing, Ihnestr. 63 - 73, 2Algorithmische Bioinformatik, Institut f\u00fcr Informatik, Takustr. 9, 14195 Berlin, Germany and 3J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042603880","display_name":"Sergey Koren","orcid":"https://orcid.org/0000-0002-1472-8962"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sergey Koren","raw_affiliation_strings":["1 International Max Planck Research School for Computational Biology and Scientific Computing, Ihnestr. 63 - 73, 2Algorithmische Bioinformatik, Institut f\u00fcr Informatik, Takustr. 9, 14195 Berlin, Germany and 3J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"1 International Max Planck Research School for Computational Biology and Scientific Computing, Ihnestr. 63 - 73, 2Algorithmische Bioinformatik, Institut f\u00fcr Informatik, Takustr. 9, 14195 Berlin, Germany and 3J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036457905","display_name":"Gennady Denisov","orcid":null},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gennady Denisov","raw_affiliation_strings":["1 International Max Planck Research School for Computational Biology and Scientific Computing, Ihnestr. 63 - 73, 2Algorithmische Bioinformatik, Institut f\u00fcr Informatik, Takustr. 9, 14195 Berlin, Germany and 3J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"1 International Max Planck Research School for Computational Biology and Scientific Computing, Ihnestr. 63 - 73, 2Algorithmische Bioinformatik, Institut f\u00fcr Informatik, Takustr. 9, 14195 Berlin, Germany and 3J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109635218","display_name":"David Weese","orcid":"https://orcid.org/0009-0005-3964-5353"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Weese","raw_affiliation_strings":["1 International Max Planck Research School for Computational Biology and Scientific Computing, Ihnestr. 63 - 73, 2Algorithmische Bioinformatik, Institut f\u00fcr Informatik, Takustr. 9, 14195 Berlin, Germany and 3J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"1 International Max Planck Research School for Computational Biology and Scientific Computing, Ihnestr. 63 - 73, 2Algorithmische Bioinformatik, Institut f\u00fcr Informatik, Takustr. 9, 14195 Berlin, Germany and 3J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027987031","display_name":"Anne\u2010Katrin Emde","orcid":"https://orcid.org/0000-0003-2553-2225"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anne-Katrin Emde","raw_affiliation_strings":["1 International Max Planck Research School for Computational Biology and Scientific Computing, Ihnestr. 63 - 73, 2Algorithmische Bioinformatik, Institut f\u00fcr Informatik, Takustr. 9, 14195 Berlin, Germany and 3J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"1 International Max Planck Research School for Computational Biology and Scientific Computing, Ihnestr. 63 - 73, 2Algorithmische Bioinformatik, Institut f\u00fcr Informatik, Takustr. 9, 14195 Berlin, Germany and 3J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028978595","display_name":"Andreas Gogol\u2010D\u00f6ring","orcid":"https://orcid.org/0009-0001-7697-0551"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andreas D\u00f6ring","raw_affiliation_strings":["1 International Max Planck Research School for Computational Biology and Scientific Computing, Ihnestr. 63 - 73, 2Algorithmische Bioinformatik, Institut f\u00fcr Informatik, Takustr. 9, 14195 Berlin, Germany and 3J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"1 International Max Planck Research School for Computational Biology and Scientific Computing, Ihnestr. 63 - 73, 2Algorithmische Bioinformatik, Institut f\u00fcr Informatik, Takustr. 9, 14195 Berlin, Germany and 3J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078948324","display_name":"Knut Reinert","orcid":"https://orcid.org/0000-0003-3078-8129"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Knut Reinert","raw_affiliation_strings":["1 International Max Planck Research School for Computational Biology and Scientific Computing, Ihnestr. 63 - 73, 2Algorithmische Bioinformatik, Institut f\u00fcr Informatik, Takustr. 9, 14195 Berlin, Germany and 3J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"1 International Max Planck Research School for Computational Biology and Scientific Computing, Ihnestr. 63 - 73, 2Algorithmische Bioinformatik, Institut f\u00fcr Informatik, Takustr. 9, 14195 Berlin, Germany and 3J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I1301553790"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5038740400"],"corresponding_institution_ids":["https://openalex.org/I1301553790"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6126,"has_fulltext":false,"cited_by_count":37,"citation_normalized_percentile":{"value":0.83128579,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"25","issue":"9","first_page":"1118","last_page":"1124"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11879","display_name":"Protist diversity and phylogeny","score":0.9686999917030334,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.753491997718811},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.6814966201782227},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.6372433304786682},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6045500636100769},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.5704014301300049},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4635673463344574},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45510685443878174},{"id":"https://openalex.org/keywords/insert","display_name":"Insert (composites)","score":0.425115704536438},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4142535328865051},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.22663870453834534},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2062608301639557},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17135757207870483},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13031697273254395},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09836223721504211},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07609093189239502}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.753491997718811},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.6814966201782227},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.6372433304786682},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6045500636100769},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.5704014301300049},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4635673463344574},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45510685443878174},{"id":"https://openalex.org/C2780098074","wikidata":"https://www.wikidata.org/wiki/Q6037362","display_name":"Insert (composites)","level":2,"score":0.425115704536438},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4142535328865051},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.22663870453834534},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2062608301639557},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17135757207870483},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13031697273254395},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09836223721504211},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07609093189239502},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp131","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp131","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/9/1118/48984498/bioinformatics_25_9_1118.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19269990","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19269990","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2732307","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2732307","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp131","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp131","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/9/1118/48984498/bioinformatics_25_9_1118.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.46000000834465027,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2145317788.pdf","grobid_xml":"https://content.openalex.org/works/W2145317788.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1501400124","https://openalex.org/W1588822927","https://openalex.org/W1599305879","https://openalex.org/W1635391495","https://openalex.org/W1841715584","https://openalex.org/W1969153299","https://openalex.org/W1984021931","https://openalex.org/W1998048394","https://openalex.org/W2002638840","https://openalex.org/W2009266444","https://openalex.org/W2021284638","https://openalex.org/W2033531015","https://openalex.org/W2058759221","https://openalex.org/W2063447939","https://openalex.org/W2068448872","https://openalex.org/W2075996757","https://openalex.org/W2088156508","https://openalex.org/W2095685450","https://openalex.org/W2100745860","https://openalex.org/W2106882534","https://openalex.org/W2107282968","https://openalex.org/W2120414630","https://openalex.org/W2127774996","https://openalex.org/W2128001071","https://openalex.org/W2132926880","https://openalex.org/W2141217788","https://openalex.org/W2144362290","https://openalex.org/W2144662851","https://openalex.org/W2144767153","https://openalex.org/W2161668137","https://openalex.org/W2229908198","https://openalex.org/W2610616788","https://openalex.org/W4285719527","https://openalex.org/W6672548028","https://openalex.org/W6689475862"],"related_works":["https://openalex.org/W4210830088","https://openalex.org/W2767590279","https://openalex.org/W3011183076","https://openalex.org/W2794893153","https://openalex.org/W2721624558","https://openalex.org/W2079322808","https://openalex.org/W2216477337","https://openalex.org/W2772185703","https://openalex.org/W2584868213","https://openalex.org/W2795731640"],"abstract_inverted_index":{"The":[0],"consensus":[1],"program":[2],"can":[3,9],"be":[4,10],"downloaded":[5],"from":[6],"http://www.seqan.de/projects/consensus.html.":[7],"It":[8],"used":[11],"stand-alone":[12],"or":[13],"in":[14,33],"conjunction":[15],"with":[16],"the":[17,26,29,34],"Celera":[18],"Assembler.":[19],"Both":[20],"application":[21],"scenarios":[22],"as":[23,25],"well":[24],"usage":[27],"of":[28],"tool":[30],"are":[31],"described":[32],"documentation.":[35]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2016-06-24T00:00:00"}
