{"id":"https://openalex.org/W2141238531","doi":"https://doi.org/10.1093/bioinformatics/btp112","title":"<i>mkESA</i>: enhanced suffix array construction tool","display_name":"<i>mkESA</i>: enhanced suffix array construction tool","publication_year":2009,"publication_date":"2009-02-26","ids":{"openalex":"https://openalex.org/W2141238531","doi":"https://doi.org/10.1093/bioinformatics/btp112","mag":"2141238531","pmid":"https://pubmed.ncbi.nlm.nih.gov/19246510"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp112","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp112","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/8/1084/50287490/bioinformatics_25_8_1084.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/8/1084/50287490/bioinformatics_25_8_1084.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061720518","display_name":"Robert Homann","orcid":null},"institutions":[{"id":"https://openalex.org/I137696358","display_name":"Gregor Mendel Institute of Molecular Plant Biology","ror":"https://ror.org/05twjp994","country_code":"AT","type":"facility","lineage":["https://openalex.org/I137696358","https://openalex.org/I138211613","https://openalex.org/I4210142901"]},{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["AT","DE"],"is_corresponding":true,"raw_author_name":"Robert Homann","raw_affiliation_strings":["1 International NRW Graduate School in Bioinformatics and Genome Research, Center for Biotechnology (CeBiTec), Bielefeld University, 33594 Bielefeld, 2Technische Fakult\u00e4t, Bielefeld University, Postfach 100 131, 33501, Bielefeld, Germany and 3GMI - Gregor Mendel Institute of Molecular Plant Biology GmbH, Dr. Bohr-Gasse 3, 1030 Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 International NRW Graduate School in Bioinformatics and Genome Research, Center for Biotechnology (CeBiTec), Bielefeld University, 33594 Bielefeld, 2Technische Fakult\u00e4t, Bielefeld University, Postfach 100 131, 33501, Bielefeld, Germany and 3GMI - Gregor Mendel Institute of Molecular Plant Biology GmbH, Dr. Bohr-Gasse 3, 1030 Vienna, Austria","institution_ids":["https://openalex.org/I137696358","https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054760242","display_name":"David Fleer","orcid":null},"institutions":[{"id":"https://openalex.org/I137696358","display_name":"Gregor Mendel Institute of Molecular Plant Biology","ror":"https://ror.org/05twjp994","country_code":"AT","type":"facility","lineage":["https://openalex.org/I137696358","https://openalex.org/I138211613","https://openalex.org/I4210142901"]},{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["AT","DE"],"is_corresponding":false,"raw_author_name":"David Fleer","raw_affiliation_strings":["1 International NRW Graduate School in Bioinformatics and Genome Research, Center for Biotechnology (CeBiTec), Bielefeld University, 33594 Bielefeld, 2Technische Fakult\u00e4t, Bielefeld University, Postfach 100 131, 33501, Bielefeld, Germany and 3GMI - Gregor Mendel Institute of Molecular Plant Biology GmbH, Dr. Bohr-Gasse 3, 1030 Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 International NRW Graduate School in Bioinformatics and Genome Research, Center for Biotechnology (CeBiTec), Bielefeld University, 33594 Bielefeld, 2Technische Fakult\u00e4t, Bielefeld University, Postfach 100 131, 33501, Bielefeld, Germany and 3GMI - Gregor Mendel Institute of Molecular Plant Biology GmbH, Dr. Bohr-Gasse 3, 1030 Vienna, Austria","institution_ids":["https://openalex.org/I137696358","https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086259996","display_name":"Robert Giegerich","orcid":null},"institutions":[{"id":"https://openalex.org/I137696358","display_name":"Gregor Mendel Institute of Molecular Plant Biology","ror":"https://ror.org/05twjp994","country_code":"AT","type":"facility","lineage":["https://openalex.org/I137696358","https://openalex.org/I138211613","https://openalex.org/I4210142901"]},{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["AT","DE"],"is_corresponding":false,"raw_author_name":"Robert Giegerich","raw_affiliation_strings":["1 International NRW Graduate School in Bioinformatics and Genome Research, Center for Biotechnology (CeBiTec), Bielefeld University, 33594 Bielefeld, 2Technische Fakult\u00e4t, Bielefeld University, Postfach 100 131, 33501, Bielefeld, Germany and 3GMI - Gregor Mendel Institute of Molecular Plant Biology GmbH, Dr. Bohr-Gasse 3, 1030 Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 International NRW Graduate School in Bioinformatics and Genome Research, Center for Biotechnology (CeBiTec), Bielefeld University, 33594 Bielefeld, 2Technische Fakult\u00e4t, Bielefeld University, Postfach 100 131, 33501, Bielefeld, Germany and 3GMI - Gregor Mendel Institute of Molecular Plant Biology GmbH, Dr. Bohr-Gasse 3, 1030 Vienna, Austria","institution_ids":["https://openalex.org/I137696358","https://openalex.org/I20121455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086412711","display_name":"Marc Rehmsmeier","orcid":"https://orcid.org/0000-0002-5021-7721"},"institutions":[{"id":"https://openalex.org/I137696358","display_name":"Gregor Mendel Institute of Molecular Plant Biology","ror":"https://ror.org/05twjp994","country_code":"AT","type":"facility","lineage":["https://openalex.org/I137696358","https://openalex.org/I138211613","https://openalex.org/I4210142901"]},{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["AT","DE"],"is_corresponding":false,"raw_author_name":"Marc Rehmsmeier","raw_affiliation_strings":["1 International NRW Graduate School in Bioinformatics and Genome Research, Center for Biotechnology (CeBiTec), Bielefeld University, 33594 Bielefeld, 2Technische Fakult\u00e4t, Bielefeld University, Postfach 100 131, 33501, Bielefeld, Germany and 3GMI - Gregor Mendel Institute of Molecular Plant Biology GmbH, Dr. Bohr-Gasse 3, 1030 Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 International NRW Graduate School in Bioinformatics and Genome Research, Center for Biotechnology (CeBiTec), Bielefeld University, 33594 Bielefeld, 2Technische Fakult\u00e4t, Bielefeld University, Postfach 100 131, 33501, Bielefeld, Germany and 3GMI - Gregor Mendel Institute of Molecular Plant Biology GmbH, Dr. Bohr-Gasse 3, 1030 Vienna, Austria","institution_ids":["https://openalex.org/I137696358","https://openalex.org/I20121455"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5061720518"],"corresponding_institution_ids":["https://openalex.org/I137696358","https://openalex.org/I20121455"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.4358,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.95753618,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"25","issue":"8","first_page":"1084","last_page":"1085"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12326","display_name":"Network Packet Processing and Optimization","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/compressed-suffix-array","display_name":"Compressed suffix array","score":0.8775699734687805},{"id":"https://openalex.org/keywords/suffix-array","display_name":"Suffix array","score":0.8390170335769653},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8128131628036499},{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.8048985004425049},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5738113522529602},{"id":"https://openalex.org/keywords/table","display_name":"Table (database)","score":0.5140963196754456},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5033907294273376},{"id":"https://openalex.org/keywords/prefix","display_name":"Prefix","score":0.4786475896835327},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.47100961208343506},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.4366682767868042},{"id":"https://openalex.org/keywords/trie","display_name":"Trie","score":0.42551523447036743},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.41593316197395325},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.37526455521583557},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3673977255821228},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.35011863708496094},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.23584029078483582},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1461530327796936},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.06341767311096191}],"concepts":[{"id":"https://openalex.org/C100903775","wikidata":"https://www.wikidata.org/wiki/Q5157028","display_name":"Compressed suffix array","level":4,"score":0.8775699734687805},{"id":"https://openalex.org/C2779259728","wikidata":"https://www.wikidata.org/wiki/Q281472","display_name":"Suffix array","level":3,"score":0.8390170335769653},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8128131628036499},{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.8048985004425049},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5738113522529602},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.5140963196754456},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5033907294273376},{"id":"https://openalex.org/C141603448","wikidata":"https://www.wikidata.org/wiki/Q134830","display_name":"Prefix","level":2,"score":0.4786475896835327},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.47100961208343506},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.4366682767868042},{"id":"https://openalex.org/C190290938","wikidata":"https://www.wikidata.org/wiki/Q387015","display_name":"Trie","level":3,"score":0.42551523447036743},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.41593316197395325},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.37526455521583557},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3673977255821228},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.35011863708496094},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.23584029078483582},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1461530327796936},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.06341767311096191},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp112","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp112","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/8/1084/50287490/bioinformatics_25_8_1084.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19246510","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19246510","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2666816","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2666816","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp112","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp112","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/8/1084/50287490/bioinformatics_25_8_1084.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141238531.pdf","grobid_xml":"https://content.openalex.org/works/W2141238531.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W938539187","https://openalex.org/W1853093403","https://openalex.org/W1976682045","https://openalex.org/W1986324942","https://openalex.org/W1990061958","https://openalex.org/W2017785114","https://openalex.org/W2107248520","https://openalex.org/W2109062349","https://openalex.org/W2117666586","https://openalex.org/W2120293208","https://openalex.org/W2134283755","https://openalex.org/W2134924833","https://openalex.org/W2158874082","https://openalex.org/W2165891191","https://openalex.org/W6677770973"],"related_works":["https://openalex.org/W2003608043","https://openalex.org/W153119118","https://openalex.org/W2583658747","https://openalex.org/W2405892617","https://openalex.org/W1486336060","https://openalex.org/W2082932857","https://openalex.org/W2158874082","https://openalex.org/W1575722140","https://openalex.org/W4293529780","https://openalex.org/W3157818565"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"We":[2],"introduce":[3],"the":[4,41,77,84,102,105],"tool":[5,59],"mkESA,":[6],"an":[7],"open":[8],"source":[9,94],"program":[10,30],"for":[11,18,50],"constructing":[12],"enhanced":[13],"suffix":[14,43,69,86],"arrays":[15,70],"(ESAs),":[16],"striving":[17],"low":[19],"memory":[20,56],"consumption,":[21],"yet":[22],"high":[23,52],"practical":[24],"speed.":[25],"mkESA":[26,97],"is":[27,48,98],"a":[28,37],"user-friendly":[29],"written":[31],"in":[32],"portable":[33],"C99,":[34],"based":[35],"on":[36],"parallelized":[38],"version":[39,111],"of":[40,96,104],"Deep-Shallow":[42],"array":[44],"construction":[45],"algorithm,":[46],"which":[47],"known":[49],"its":[51],"speed":[53],"and":[54,67,71],"small":[55],"usage.":[57],"The":[58,93],"handles":[60],"large":[61],"FASTA":[62],"files":[63],"with":[64],"multiple":[65],"sequences,":[66],"computes":[68],"various":[72],"additional":[73],"tables,":[74],"such":[75],"as":[76],"LCP":[78],"table":[79],"(longest":[80],"common":[81],"prefix)":[82],"or":[83],"inverse":[85],"array,":[87],"from":[88],"given":[89],"sequence":[90],"data.":[91],"Availability:":[92],"code":[95],"freely":[99],"available":[100],"under":[101],"terms":[103],"GNU":[106],"General":[107],"Public":[108],"License":[109],"(GPL)":[110],"2":[112],"at":[113],"http://bibiserv.techfak.uni-bielefeld.de/mkesa/.":[114],"Contact:":[115],"rhomann@techfak.uni-bielefeld.de":[116]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":4}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2016-06-24T00:00:00"}
