{"id":"https://openalex.org/W2123439964","doi":"https://doi.org/10.1093/bioinformatics/btp071","title":"High-performance gene name normalization with G<scp>e</scp>N<scp>o</scp>","display_name":"High-performance gene name normalization with G<scp>e</scp>N<scp>o</scp>","publication_year":2009,"publication_date":"2009-02-02","ids":{"openalex":"https://openalex.org/W2123439964","doi":"https://doi.org/10.1093/bioinformatics/btp071","mag":"2123439964","pmid":"https://pubmed.ncbi.nlm.nih.gov/19188193"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp071","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/6/815/50028106/bioinformatics_25_6_815.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/6/815/50028106/bioinformatics_25_6_815.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086045687","display_name":"Joachim Wermter","orcid":null},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Joachim Wermter","raw_affiliation_strings":["Jena University Language and Information Engineering (JULIE) Lab, Friedrich-Schiller-Universit\u00e4t Jena, F\u00fcrstengraben 30, 07743 Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Jena University Language and Information Engineering (JULIE) Lab, Friedrich-Schiller-Universit\u00e4t Jena, F\u00fcrstengraben 30, 07743 Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002347902","display_name":"Katrin Tomanek","orcid":"https://orcid.org/0000-0002-9873-7144"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Katrin Tomanek","raw_affiliation_strings":["Jena University Language and Information Engineering (JULIE) Lab, Friedrich-Schiller-Universit\u00e4t Jena, F\u00fcrstengraben 30, 07743 Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Jena University Language and Information Engineering (JULIE) Lab, Friedrich-Schiller-Universit\u00e4t Jena, F\u00fcrstengraben 30, 07743 Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044841280","display_name":"Udo Hahn","orcid":"https://orcid.org/0000-0002-5052-0245"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Udo Hahn","raw_affiliation_strings":["Jena University Language and Information Engineering (JULIE) Lab, Friedrich-Schiller-Universit\u00e4t Jena, F\u00fcrstengraben 30, 07743 Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Jena University Language and Information Engineering (JULIE) Lab, Friedrich-Schiller-Universit\u00e4t Jena, F\u00fcrstengraben 30, 07743 Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5086045687"],"corresponding_institution_ids":["https://openalex.org/I76198965"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.7963,"has_fulltext":true,"cited_by_count":102,"citation_normalized_percentile":{"value":0.96975778,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"25","issue":"6","first_page":"815","last_page":"821"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9779000282287598,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9749000072479248,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.7820172905921936},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7230009436607361},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.586696982383728},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.5848701000213623},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.4979226589202881},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4897427558898926},{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.4814288318157196},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4283812344074249},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4206014573574066},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3255174160003662},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.23021629452705383},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1704096794128418},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.16187000274658203},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1450972557067871},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13980957865715027}],"concepts":[{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.7820172905921936},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7230009436607361},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.586696982383728},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.5848701000213623},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.4979226589202881},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4897427558898926},{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.4814288318157196},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4283812344074249},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4206014573574066},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3255174160003662},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.23021629452705383},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1704096794128418},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.16187000274658203},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1450972557067871},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13980957865715027},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btp071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp071","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/6/815/50028106/bioinformatics_25_6_815.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19188193","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19188193","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp071","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/6/815/50028106/bioinformatics_25_6_815.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1302040440","display_name":"Verbundvorhaben: Entwicklung eines Wissensmanagementsystems zur Verbreiterung des Wissens und Erh\u00f6hung der Sicherheit im Bereich der Stammzellbiologie; Teilvorhaben: Entwicklung der Computerlinguistikkomponenten des Wissensmanagementsystems","funder_award_id":"01DS001B","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G352791218","display_name":null,"funder_award_id":"(BMBF)","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2123439964.pdf","grobid_xml":"https://content.openalex.org/works/W2123439964.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1988946940","https://openalex.org/W1994843778","https://openalex.org/W2048140075","https://openalex.org/W2101265630","https://openalex.org/W2107005506","https://openalex.org/W2114361266","https://openalex.org/W2116159459","https://openalex.org/W2126276057","https://openalex.org/W2129113459","https://openalex.org/W2129267433","https://openalex.org/W2133627190","https://openalex.org/W2141869602","https://openalex.org/W2144896636","https://openalex.org/W2147880316","https://openalex.org/W2157870551","https://openalex.org/W2163107094","https://openalex.org/W2166474856","https://openalex.org/W2168091548","https://openalex.org/W4300022934","https://openalex.org/W6675914680","https://openalex.org/W6677122314","https://openalex.org/W6677722505","https://openalex.org/W6682082992"],"related_works":["https://openalex.org/W2017899917","https://openalex.org/W2080571363","https://openalex.org/W2481322495","https://openalex.org/W2898682754","https://openalex.org/W2889841093","https://openalex.org/W4246603716","https://openalex.org/W2151082141","https://openalex.org/W2365236913","https://openalex.org/W2793132289","https://openalex.org/W3203550792"],"abstract_inverted_index":{"GeNo,":[0],"including":[1],"its":[2],"underlying":[3],"resources,":[4],"will":[5],"be":[6],"available":[7],"from":[8],"www.julielab.de.":[9],"It":[10],"is":[11],"also":[12],"currently":[13],"deployed":[14],"in":[15],"the":[16],"Semedico":[17],"search":[18],"engine":[19],"at":[20],"www.semedico.org.":[21]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":15},{"year":2012,"cited_by_count":10}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2016-06-24T00:00:00"}
