{"id":"https://openalex.org/W2112275496","doi":"https://doi.org/10.1093/bioinformatics/btp069","title":"BISEN: Biochemical Simulation Environment","display_name":"BISEN: Biochemical Simulation Environment","publication_year":2009,"publication_date":"2009-02-25","ids":{"openalex":"https://openalex.org/W2112275496","doi":"https://doi.org/10.1093/bioinformatics/btp069","mag":"2112275496","pmid":"https://pubmed.ncbi.nlm.nih.gov/19244386"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp069","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp069","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/6/836/50286731/bioinformatics_25_6_836.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/6/836/50286731/bioinformatics_25_6_836.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111900042","display_name":"Joep Vanlier","orcid":null},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]}],"countries":["NL","US"],"is_corresponding":false,"raw_author_name":"J. Vanlier","raw_affiliation_strings":["1 BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I83019370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025508481","display_name":"Fan Wu","orcid":"https://orcid.org/0000-0001-8339-4049"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]}],"countries":["NL","US"],"is_corresponding":false,"raw_author_name":"F. Wu","raw_affiliation_strings":["1 BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I83019370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061445062","display_name":"Feng Qi","orcid":"https://orcid.org/0000-0003-1061-7058"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]}],"countries":["NL","US"],"is_corresponding":false,"raw_author_name":"F. Qi","raw_affiliation_strings":["1 BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I83019370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063009717","display_name":"Kalyan C. Vinnakota","orcid":"https://orcid.org/0000-0003-2185-2213"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]}],"countries":["NL","US"],"is_corresponding":false,"raw_author_name":"K. C. Vinnakota","raw_affiliation_strings":["1 BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I83019370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020302119","display_name":"Yanxia Han","orcid":"https://orcid.org/0000-0003-2280-693X"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]}],"countries":["NL","US"],"is_corresponding":false,"raw_author_name":"Y. Han","raw_affiliation_strings":["1 BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I83019370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111735807","display_name":"Ranjan K. Dash","orcid":null},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]}],"countries":["NL","US"],"is_corresponding":false,"raw_author_name":"R. K. Dash","raw_affiliation_strings":["1 BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I83019370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020347599","display_name":"Feng\u2010Ming Yang","orcid":"https://orcid.org/0000-0003-4857-4516"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]}],"countries":["NL","US"],"is_corresponding":false,"raw_author_name":"F. Yang","raw_affiliation_strings":["1 BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I83019370"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054763364","display_name":"Daniel Beard","orcid":"https://orcid.org/0000-0003-0974-2353"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]}],"countries":["NL","US"],"is_corresponding":false,"raw_author_name":"D. A. Beard","raw_affiliation_strings":["1 BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 BioModeling and Bioinformatics, BioMedical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands, 2Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA and 3Lilly-Singapore Centre for Drug Discovery Pte Ltd, Singapore","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I83019370"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.9586,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.74982354,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"25","issue":"6","first_page":"836","last_page":"837"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.16599999368190765,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.16599999368190765,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13539","display_name":"thermodynamics and calorimetric analyses","score":0.10540000349283218,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11747","display_name":"Metal-Catalyzed Oxygenation Mechanisms","score":0.09969999641180038,"subfield":{"id":"https://openalex.org/subfields/1604","display_name":"Inorganic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6724965572357178}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6724965572357178}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001669","descriptor_name":"Biochemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001669","descriptor_name":"Biochemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001669","descriptor_name":"Biochemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001669","descriptor_name":"Biochemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/bioinformatics/btp069","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp069","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/6/836/50286731/bioinformatics_25_6_836.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19244386","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19244386","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.tue.nl:publications/f7417e73-e678-4c1d-bb86-fcf5a7f8ece5","is_oa":false,"landing_page_url":"https://research.tue.nl/en/publications/f7417e73-e678-4c1d-bb86-fcf5a7f8ece5","pdf_url":null,"source":{"id":"https://openalex.org/S4406922641","display_name":"TU/e Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Vanlier, J, Wu, F, Qi, F, Vinnakota, K C, Han, Y, Dash, R K, Yang, F & Beard, D A 2009, 'BISEN: Biochemical simulation environment', Bioinformatics, vol. 25, no. 6, pp. 836-837. https://doi.org/10.1093/bioinformatics/btp069","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:651403","is_oa":false,"landing_page_url":"http://library.tue.nl/csp/dare/LinkToRepository.csp?recordnumber=651403","pdf_url":null,"source":{"id":"https://openalex.org/S4406923046","display_name":"TU/e Research Portal (Eindhoven University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN:1367-4803","raw_type":"Article / Letter to the editor"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1022.3844","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1022.3844","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2009/02/25/bioinformatics.btp069.full.pdf","raw_type":"text"},{"id":"pmh:oai:library.tue.nl:651403","is_oa":false,"landing_page_url":"http://repository.tue.nl/651403","pdf_url":null,"source":{"id":"https://openalex.org/S4406923046","display_name":"TU/e Research Portal (Eindhoven University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN:1367-4803","raw_type":"Article / Letter to the editor"},{"id":"pmh:oai:pubmedcentral.nih.gov:2732302","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2732302","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:tue:oai:pure.tue.nl:publications/f7417e73-e678-4c1d-bb86-fcf5a7f8ece5","is_oa":false,"landing_page_url":"https://research.tue.nl/nl/publications/f7417e73-e678-4c1d-bb86-fcf5a7f8ece5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 25(6), 836 - 837. Oxford University Press","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp069","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp069","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/6/836/50286731/bioinformatics_25_6_836.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2112275496.pdf"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W1487836487","https://openalex.org/W1558903631","https://openalex.org/W2011843627","https://openalex.org/W2148329459"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"SUMMARY:":[0],"The":[1,67],"Biochemical":[2],"Simulation":[3],"Environment":[4],"(BISEN)":[5],"is":[6,28],"a":[7,70],"suite":[8],"of":[9,37,44,55],"tools":[10],"for":[11,18,40,49],"generating":[12],"equations":[13,39],"and":[14,46,59,62,69],"associated":[15],"computer":[16],"programs":[17],"simulating":[19],"biochemical":[20,51,57],"systems":[21,36,43],"in":[22],"the":[23,29],"MATLAB":[24],"computing":[25],"environment.":[26],"This":[27],"first":[30],"package":[31],"that":[32],"can":[33],"generate":[34],"appropriate":[35],"differential":[38],"user-specified":[41],"multi-compartment":[42],"enzymes":[45],"transporters":[47],"accounting":[48],"detailed":[50],"thermodynamics,":[52],"rapid":[53],"equilibria":[54],"multiple":[56],"species":[58],"dynamic":[60],"proton":[61],"metal":[63],"ion":[64],"buffering.":[65],"AVAILABILITY:":[66],"software":[68],"user":[71],"manual":[72],"(including":[73],"several":[74],"tutorial":[75],"examples)":[76],"are":[77],"available":[78],"at":[79],"bbc.mcw.edu/BISEN.":[80]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2025-10-10T00:00:00"}
