{"id":"https://openalex.org/W2150109218","doi":"https://doi.org/10.1093/bioinformatics/btp064","title":"FRANz: reconstruction of wild multi-generation pedigrees","display_name":"FRANz: reconstruction of wild multi-generation pedigrees","publication_year":2009,"publication_date":"2009-02-08","ids":{"openalex":"https://openalex.org/W2150109218","doi":"https://doi.org/10.1093/bioinformatics/btp064","mag":"2150109218","pmid":"https://pubmed.ncbi.nlm.nih.gov/19202194"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp064","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/16/2134/48994156/bioinformatics_25_16_2134.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/16/2134/48994156/bioinformatics_25_16_2134.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069185084","display_name":"Markus Riester","orcid":"https://orcid.org/0000-0002-4759-8332"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I4210145647","display_name":"Fraunhofer Institute for Cell Therapy and Immunology","ror":"https://ror.org/04x45f476","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210145647","https://openalex.org/I4923324"]}],"countries":["AT","DE"],"is_corresponding":true,"raw_author_name":"Markus Riester","raw_affiliation_strings":["1 Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, 2RNomics Group, Fraunhofer Institut for Cell Therapy and Immunology (IZI), Perlickstra\u00dfe 1, D-04103 Leipzig, Germany, 3Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 4The Santa Fe Institute, 1399 Hyde Park Road., Santa Fe, New Mexico, USA"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, 2RNomics Group, Fraunhofer Institut for Cell Therapy and Immunology (IZI), Perlickstra\u00dfe 1, D-04103 Leipzig, Germany, 3Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 4The Santa Fe Institute, 1399 Hyde Park Road., Santa Fe, New Mexico, USA","institution_ids":["https://openalex.org/I4210145647","https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016104736","display_name":"Peter F. Stadler","orcid":"https://orcid.org/0000-0002-5016-5191"},"institutions":[{"id":"https://openalex.org/I4210145647","display_name":"Fraunhofer Institute for Cell Therapy and Immunology","ror":"https://ror.org/04x45f476","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210145647","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT","DE"],"is_corresponding":false,"raw_author_name":"Peter F. Stadler","raw_affiliation_strings":["1 Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, 2RNomics Group, Fraunhofer Institut for Cell Therapy and Immunology (IZI), Perlickstra\u00dfe 1, D-04103 Leipzig, Germany, 3Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 4The Santa Fe Institute, 1399 Hyde Park Road., Santa Fe, New Mexico, USA"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, 2RNomics Group, Fraunhofer Institut for Cell Therapy and Immunology (IZI), Perlickstra\u00dfe 1, D-04103 Leipzig, Germany, 3Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 4The Santa Fe Institute, 1399 Hyde Park Road., Santa Fe, New Mexico, USA","institution_ids":["https://openalex.org/I4210145647","https://openalex.org/I129774422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072448062","display_name":"Konstantin Klemm","orcid":"https://orcid.org/0000-0002-0855-7474"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I4210145647","display_name":"Fraunhofer Institute for Cell Therapy and Immunology","ror":"https://ror.org/04x45f476","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210145647","https://openalex.org/I4923324"]}],"countries":["AT","DE"],"is_corresponding":false,"raw_author_name":"Konstantin Klemm","raw_affiliation_strings":["1 Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, 2RNomics Group, Fraunhofer Institut for Cell Therapy and Immunology (IZI), Perlickstra\u00dfe 1, D-04103 Leipzig, Germany, 3Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 4The Santa Fe Institute, 1399 Hyde Park Road., Santa Fe, New Mexico, USA"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, 2RNomics Group, Fraunhofer Institut for Cell Therapy and Immunology (IZI), Perlickstra\u00dfe 1, D-04103 Leipzig, Germany, 3Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 4The Santa Fe Institute, 1399 Hyde Park Road., Santa Fe, New Mexico, USA","institution_ids":["https://openalex.org/I4210145647","https://openalex.org/I129774422"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5069185084"],"corresponding_institution_ids":["https://openalex.org/I129774422","https://openalex.org/I4210145647"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.5366,"has_fulltext":false,"cited_by_count":109,"citation_normalized_percentile":{"value":0.84785532,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"25","issue":"16","first_page":"2134","last_page":"2139"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9368000030517578,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9368000030517578,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pedigree-chart","display_name":"Pedigree chart","score":0.912380576133728},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41257986426353455},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3647269606590271},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3637930154800415},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3473118245601654},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13683846592903137}],"concepts":[{"id":"https://openalex.org/C22593422","wikidata":"https://www.wikidata.org/wiki/Q3242583","display_name":"Pedigree chart","level":3,"score":0.912380576133728},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41257986426353455},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3647269606590271},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3637930154800415},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3473118245601654},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13683846592903137}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/bioinformatics/btp064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp064","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/16/2134/48994156/bioinformatics_25_16_2134.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19202194","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19202194","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.330.814","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.330.814","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://samoa.santafe.edu/media/workingpapers/09-04-012.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.357.451","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.357.451","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/01/c2/Bioinformatics_2009_Aug_15_25(16)_2134-2139.tar.gz","raw_type":"text"},{"id":"pmh:oai:fraunhofer.de:N-103691","is_oa":false,"landing_page_url":"http://publica.fraunhofer.de/documents/N-103691.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400801","display_name":"Publikationsdatenbank der Fraunhofer-Gesellschaft (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer IZI","raw_type":"Journal Article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/219165","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/219165","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2722992","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2722992","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:qucosa:de:qucosa:32118","is_oa":true,"landing_page_url":"http://ul.qucosa.de/id/qucosa%3A32118","pdf_url":null,"source":{"id":"https://openalex.org/S4377196312","display_name":"Qucosa (Saxon State and University Library Dresden)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I3132420320","host_organization_name":"SLUB Dresden","host_organization_lineage":["https://openalex.org/I3132420320"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"doc-type:Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp064","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/16/2134/48994156/bioinformatics_25_16_2134.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2150109218.pdf","grobid_xml":"https://content.openalex.org/works/W2150109218.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1530461011","https://openalex.org/W1903669969","https://openalex.org/W1942651051","https://openalex.org/W1969746417","https://openalex.org/W1980330703","https://openalex.org/W2006260995","https://openalex.org/W2010049364","https://openalex.org/W2015260632","https://openalex.org/W2016690020","https://openalex.org/W2016936453","https://openalex.org/W2020481216","https://openalex.org/W2024060531","https://openalex.org/W2034925086","https://openalex.org/W2041918616","https://openalex.org/W2056507745","https://openalex.org/W2071087740","https://openalex.org/W2075695811","https://openalex.org/W2101052289","https://openalex.org/W2103992021","https://openalex.org/W2107473082","https://openalex.org/W2109716699","https://openalex.org/W2110065044","https://openalex.org/W2115025364","https://openalex.org/W2116376624","https://openalex.org/W2119232685","https://openalex.org/W2122126732","https://openalex.org/W2127766156","https://openalex.org/W2130562173","https://openalex.org/W2143854977","https://openalex.org/W2160892640","https://openalex.org/W2161444534","https://openalex.org/W2164819761","https://openalex.org/W2169611786","https://openalex.org/W2170445274","https://openalex.org/W2331251712","https://openalex.org/W3092982609","https://openalex.org/W4249101476","https://openalex.org/W4302120960","https://openalex.org/W6654215179","https://openalex.org/W6677553396"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W1971568933","https://openalex.org/W2369420545"],"abstract_inverted_index":{"The":[0],"C":[1],"source":[2],"code":[3],"of":[4],"FRANz":[5],"can":[6],"be":[7],"obtained":[8],"under":[9],"the":[10],"GPL":[11],"from":[12],"http://www.bioinf.uni-leipzig.de/Software/FRANz/.":[13]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
