{"id":"https://openalex.org/W2162119832","doi":"https://doi.org/10.1093/bioinformatics/btp050","title":"Benchmarks for identification of ordinary differential equations from time series data","display_name":"Benchmarks for identification of ordinary differential equations from time series data","publication_year":2009,"publication_date":"2009-01-28","ids":{"openalex":"https://openalex.org/W2162119832","doi":"https://doi.org/10.1093/bioinformatics/btp050","mag":"2162119832","pmid":"https://pubmed.ncbi.nlm.nih.gov/19176548"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp050","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/6/780/16892193/btp050.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/6/780/16892193/btp050.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002506738","display_name":"Peter Gennemark","orcid":"https://orcid.org/0000-0002-7865-7454"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I66862912","display_name":"Chalmers University of Technology","ror":"https://ror.org/040wg7k59","country_code":"SE","type":"education","lineage":["https://openalex.org/I66862912"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Peter Gennemark","raw_affiliation_strings":["1 Department of Mathematical Sciences, University of G\u00f6teborg, SE-412 96 G\u00f6teborg, 2Department of Mathematics, Uppsala University, SE-751 06 Uppsala and 3Department of Computer Science and Engineering, Chalmers University of Technology, SE-412 96 G\u00f6teborg, Sweden"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematical Sciences, University of G\u00f6teborg, SE-412 96 G\u00f6teborg, 2Department of Mathematics, Uppsala University, SE-751 06 Uppsala and 3Department of Computer Science and Engineering, Chalmers University of Technology, SE-412 96 G\u00f6teborg, Sweden","institution_ids":["https://openalex.org/I66862912","https://openalex.org/I123387679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063127621","display_name":"Dag Wedelin","orcid":null},"institutions":[{"id":"https://openalex.org/I66862912","display_name":"Chalmers University of Technology","ror":"https://ror.org/040wg7k59","country_code":"SE","type":"education","lineage":["https://openalex.org/I66862912"]},{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Dag Wedelin","raw_affiliation_strings":["1 Department of Mathematical Sciences, University of G\u00f6teborg, SE-412 96 G\u00f6teborg, 2Department of Mathematics, Uppsala University, SE-751 06 Uppsala and 3Department of Computer Science and Engineering, Chalmers University of Technology, SE-412 96 G\u00f6teborg, Sweden"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematical Sciences, University of G\u00f6teborg, SE-412 96 G\u00f6teborg, 2Department of Mathematics, Uppsala University, SE-751 06 Uppsala and 3Department of Computer Science and Engineering, Chalmers University of Technology, SE-412 96 G\u00f6teborg, Sweden","institution_ids":["https://openalex.org/I66862912","https://openalex.org/I123387679"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5002506738"],"corresponding_institution_ids":["https://openalex.org/I123387679","https://openalex.org/I66862912"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.8305,"has_fulltext":false,"cited_by_count":38,"citation_normalized_percentile":{"value":0.91056853,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"25","issue":"6","first_page":"780","last_page":"786"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.9030367136001587},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7258427739143372},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7118896245956421},{"id":"https://openalex.org/keywords/ode","display_name":"Ode","score":0.6633902192115784},{"id":"https://openalex.org/keywords/ordinary-differential-equation","display_name":"Ordinary differential equation","score":0.6490276455879211},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.47256723046302795},{"id":"https://openalex.org/keywords/parameter-identification-problem","display_name":"Parameter identification problem","score":0.46274334192276},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4355078339576721},{"id":"https://openalex.org/keywords/time-series","display_name":"Time series","score":0.41536426544189453},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.41408485174179077},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3712846636772156},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.33902448415756226},{"id":"https://openalex.org/keywords/differential-equation","display_name":"Differential equation","score":0.33837342262268066},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.21216556429862976},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20189189910888672},{"id":"https://openalex.org/keywords/applied-mathematics","display_name":"Applied mathematics","score":0.17537197470664978},{"id":"https://openalex.org/keywords/model-parameter","display_name":"Model parameter","score":0.12275099754333496}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.9030367136001587},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7258427739143372},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7118896245956421},{"id":"https://openalex.org/C34862557","wikidata":"https://www.wikidata.org/wiki/Q178985","display_name":"Ode","level":2,"score":0.6633902192115784},{"id":"https://openalex.org/C51544822","wikidata":"https://www.wikidata.org/wiki/Q465274","display_name":"Ordinary differential equation","level":3,"score":0.6490276455879211},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.47256723046302795},{"id":"https://openalex.org/C79610928","wikidata":"https://www.wikidata.org/wiki/Q1656743","display_name":"Parameter identification problem","level":3,"score":0.46274334192276},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4355078339576721},{"id":"https://openalex.org/C151406439","wikidata":"https://www.wikidata.org/wiki/Q186588","display_name":"Time series","level":2,"score":0.41536426544189453},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.41408485174179077},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3712846636772156},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.33902448415756226},{"id":"https://openalex.org/C78045399","wikidata":"https://www.wikidata.org/wiki/Q11214","display_name":"Differential equation","level":2,"score":0.33837342262268066},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.21216556429862976},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20189189910888672},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.17537197470664978},{"id":"https://openalex.org/C2983447341","wikidata":"https://www.wikidata.org/wiki/Q1413083","display_name":"Model parameter","level":2,"score":0.12275099754333496},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btp050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp050","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/6/780/16892193/btp050.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19176548","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19176548","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:1414547","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2654804","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:publications.lib.chalmers.se:98469","is_oa":false,"landing_page_url":"http://publications.lib.chalmers.se/publication/98469-benchmarks-for-identification-of-ordinary-differential-equations-from-time-series-data","pdf_url":null,"source":{"id":"https://openalex.org/S4377196470","display_name":"Chalmers Publication Library (Chalmers University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66862912","host_organization_name":"Chalmers University of Technology","host_organization_lineage":["https://openalex.org/I66862912"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text.Article.Journal.PeerReviewed"},{"id":"pmh:oai:research.chalmers.se:98469","is_oa":false,"landing_page_url":"https://research.chalmers.se/en/publication/98469","pdf_url":null,"source":{"id":"https://openalex.org/S4306402469","display_name":"Chalmers Research (Chalmers University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66862912","host_organization_name":"Chalmers University of Technology","host_organization_lineage":["https://openalex.org/I66862912"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp050","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/6/780/16892193/btp050.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2162119832.pdf","grobid_xml":"https://content.openalex.org/works/W2162119832.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W103930971","https://openalex.org/W1482637285","https://openalex.org/W1485858078","https://openalex.org/W1510585142","https://openalex.org/W1966534566","https://openalex.org/W1987043199","https://openalex.org/W1987292430","https://openalex.org/W1993527278","https://openalex.org/W1996264210","https://openalex.org/W2006005484","https://openalex.org/W2017760855","https://openalex.org/W2020974538","https://openalex.org/W2027175324","https://openalex.org/W2060424176","https://openalex.org/W2067478206","https://openalex.org/W2088343152","https://openalex.org/W2093176339","https://openalex.org/W2093828424","https://openalex.org/W2100169396","https://openalex.org/W2116566535","https://openalex.org/W2118893325","https://openalex.org/W2119407589","https://openalex.org/W2121008927","https://openalex.org/W2137474062","https://openalex.org/W2138148774","https://openalex.org/W2139038704","https://openalex.org/W2141239733","https://openalex.org/W2149325066","https://openalex.org/W2155389397","https://openalex.org/W2158214348","https://openalex.org/W2164218541","https://openalex.org/W2165603655","https://openalex.org/W2167980479","https://openalex.org/W2170697148","https://openalex.org/W6629178018","https://openalex.org/W6682743303","https://openalex.org/W6821232006"],"related_works":["https://openalex.org/W2558625629","https://openalex.org/W4301790756","https://openalex.org/W155887554","https://openalex.org/W3200476551","https://openalex.org/W2150798635","https://openalex.org/W2080650820","https://openalex.org/W1964982224","https://openalex.org/W3025713978","https://openalex.org/W4226115292","https://openalex.org/W3096986660"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
