{"id":"https://openalex.org/W2158376448","doi":"https://doi.org/10.1093/bioinformatics/btp045","title":"QMSim: a large-scale genome simulator for livestock","display_name":"QMSim: a large-scale genome simulator for livestock","publication_year":2009,"publication_date":"2009-01-28","ids":{"openalex":"https://openalex.org/W2158376448","doi":"https://doi.org/10.1093/bioinformatics/btp045","mag":"2158376448","pmid":"https://pubmed.ncbi.nlm.nih.gov/19176551"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp045","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/680/48983776/bioinformatics_25_5_680.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/680/48983776/bioinformatics_25_5_680.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090080840","display_name":"Mehdi Sargolzaei","orcid":"https://orcid.org/0000-0003-3052-0739"},"institutions":[{"id":"https://openalex.org/I79817857","display_name":"University of Guelph","ror":"https://ror.org/01r7awg59","country_code":"CA","type":"education","lineage":["https://openalex.org/I79817857"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Mehdi Sargolzaei","raw_affiliation_strings":["Department of Animal and Poultry Science, University of Guelph, Guelph, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal and Poultry Science, University of Guelph, Guelph, Ontario, Canada","institution_ids":["https://openalex.org/I79817857"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016372019","display_name":"Fl\u00e1vio S. Schenkel","orcid":"https://orcid.org/0000-0001-8700-0633"},"institutions":[{"id":"https://openalex.org/I79817857","display_name":"University of Guelph","ror":"https://ror.org/01r7awg59","country_code":"CA","type":"education","lineage":["https://openalex.org/I79817857"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Flavio S Schenkel","raw_affiliation_strings":["Department of Animal and Poultry Science, University of Guelph, Guelph, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal and Poultry Science, University of Guelph, Guelph, Ontario, Canada","institution_ids":["https://openalex.org/I79817857"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5090080840"],"corresponding_institution_ids":["https://openalex.org/I79817857"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.3673,"has_fulltext":true,"cited_by_count":399,"citation_normalized_percentile":{"value":0.94830806,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"25","issue":"5","first_page":"680","last_page":"681"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.5044999718666077,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.5044999718666077,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.41190001368522644,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.015399999916553497,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.8831121921539307},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6805248260498047},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5392263531684875},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4552336037158966},{"id":"https://openalex.org/keywords/pedigree-chart","display_name":"Pedigree chart","score":0.4487990140914917},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.22614142298698425},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12413135170936584},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1048063337802887},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.0796026885509491},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.06835818290710449}],"concepts":[{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.8831121921539307},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6805248260498047},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5392263531684875},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4552336037158966},{"id":"https://openalex.org/C22593422","wikidata":"https://www.wikidata.org/wiki/Q3242583","display_name":"Pedigree chart","level":3,"score":0.4487990140914917},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.22614142298698425},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12413135170936584},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1048063337802887},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.0796026885509491},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.06835818290710449},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000829","descriptor_name":"Animals, Domestic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000829","descriptor_name":"Animals, Domestic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000829","descriptor_name":"Animals, Domestic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btp045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp045","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/680/48983776/bioinformatics_25_5_680.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19176551","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19176551","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp045","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/680/48983776/bioinformatics_25_5_680.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158376448.pdf","grobid_xml":"https://content.openalex.org/works/W2158376448.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1581230381","https://openalex.org/W2095595785","https://openalex.org/W2103106090","https://openalex.org/W2116329478","https://openalex.org/W2134599124","https://openalex.org/W2140858173","https://openalex.org/W2148981095","https://openalex.org/W2151773637","https://openalex.org/W2161644980"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2279490262","https://openalex.org/W2350278424","https://openalex.org/W2071432835","https://openalex.org/W2473551174","https://openalex.org/W4234371507","https://openalex.org/W2366851666","https://openalex.org/W4299534542","https://openalex.org/W2079819877","https://openalex.org/W4234609815"],"abstract_inverted_index":{"SUMMARY:":[0],"QMSim":[1,84],"was":[2],"designed":[3],"to":[4,33,62],"simulate":[5],"large-scale":[6],"genotyping":[7],"data":[8],"in":[9,21,38,72],"multiple":[10],"and":[11,37,77,87],"complex":[12],"livestock":[13],"pedigrees.":[14],"The":[15,68],"simulation":[16],"is":[17,31,70],"basically":[18],"carried":[19],"out":[20],"two":[22],"steps.":[23],"In":[24],"the":[25,39],"first":[26],"step,":[27,41],"a":[28],"historical":[29],"population":[30,43],"simulated":[32],"establish":[34],"mutation-drift":[35],"equilibrium,":[36],"second":[40],"recent":[42],"structures":[44],"are":[45,89],"generated,":[46],"which":[47],"can":[48,65],"be":[49,66],"very":[50],"complex.":[51],"A":[52],"wide":[53],"variety":[54],"of":[55,74,83],"genome":[56],"architectures,":[57],"ranging":[58],"from":[59],"infinitesimal":[60],"model":[61],"single-locus":[63],"model,":[64],"simulated.":[67],"program":[69],"efficient":[71],"terms":[73],"computing":[75],"time":[76],"memory":[78],"requirements.":[79],"AVAILABILITY:":[80],"Executable":[81],"versions":[82],"for":[85],"Windows":[86],"Linux":[88],"freely":[90],"available":[91],"at":[92],"http://www.aps.uoguelph.ca/~msargol/qmsim/.":[93]},"counts_by_year":[{"year":2026,"cited_by_count":15},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":31},{"year":2023,"cited_by_count":31},{"year":2022,"cited_by_count":31},{"year":2021,"cited_by_count":36},{"year":2020,"cited_by_count":46},{"year":2019,"cited_by_count":34},{"year":2018,"cited_by_count":40},{"year":2017,"cited_by_count":29},{"year":2016,"cited_by_count":20},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":16},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":13}],"updated_date":"2026-07-11T18:08:03.149640","created_date":"2025-10-10T00:00:00"}
