{"id":"https://openalex.org/W2145481313","doi":"https://doi.org/10.1093/bioinformatics/btp044","title":"Radi\u00e9: visualizing taxon properties and parsimonious mappings using a radial phylogenetic tree","display_name":"Radi\u00e9: visualizing taxon properties and parsimonious mappings using a radial phylogenetic tree","publication_year":2009,"publication_date":"2009-02-04","ids":{"openalex":"https://openalex.org/W2145481313","doi":"https://doi.org/10.1093/bioinformatics/btp044","mag":"2145481313","pmid":"https://pubmed.ncbi.nlm.nih.gov/19193733"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp044","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/672/16892334/btp044.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/672/16892334/btp044.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007734757","display_name":"Jacqueline Whalley","orcid":"https://orcid.org/0000-0001-7633-5200"},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]},{"id":"https://openalex.org/I39854758","display_name":"Auckland University of Technology","ror":"https://ror.org/01zvqw119","country_code":"NZ","type":"education","lineage":["https://openalex.org/I39854758"]}],"countries":["CA","NZ"],"is_corresponding":true,"raw_author_name":"Jacqueline Whalley","raw_affiliation_strings":["1 School of Computing and Mathematical Sciences, Auckland University of Technology, Private Bag 92006, Auckland 1142, New Zealand and 2Faculty of Computer Science, Dalhousie University, 6050 University Avenue, Halifax, Nova Scotia, Canada B3H 1W5"],"affiliations":[{"raw_affiliation_string":"1 School of Computing and Mathematical Sciences, Auckland University of Technology, Private Bag 92006, Auckland 1142, New Zealand and 2Faculty of Computer Science, Dalhousie University, 6050 University Avenue, Halifax, Nova Scotia, Canada B3H 1W5","institution_ids":["https://openalex.org/I39854758","https://openalex.org/I129902397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075790596","display_name":"Stephen P. Brooks","orcid":"https://orcid.org/0000-0002-5701-0125"},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]},{"id":"https://openalex.org/I39854758","display_name":"Auckland University of Technology","ror":"https://ror.org/01zvqw119","country_code":"NZ","type":"education","lineage":["https://openalex.org/I39854758"]}],"countries":["CA","NZ"],"is_corresponding":false,"raw_author_name":"Stephen Brooks","raw_affiliation_strings":["1 School of Computing and Mathematical Sciences, Auckland University of Technology, Private Bag 92006, Auckland 1142, New Zealand and 2Faculty of Computer Science, Dalhousie University, 6050 University Avenue, Halifax, Nova Scotia, Canada B3H 1W5"],"affiliations":[{"raw_affiliation_string":"1 School of Computing and Mathematical Sciences, Auckland University of Technology, Private Bag 92006, Auckland 1142, New Zealand and 2Faculty of Computer Science, Dalhousie University, 6050 University Avenue, Halifax, Nova Scotia, Canada B3H 1W5","institution_ids":["https://openalex.org/I39854758","https://openalex.org/I129902397"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063083987","display_name":"Robert G. Beiko","orcid":"https://orcid.org/0000-0002-5065-4980"},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]},{"id":"https://openalex.org/I39854758","display_name":"Auckland University of Technology","ror":"https://ror.org/01zvqw119","country_code":"NZ","type":"education","lineage":["https://openalex.org/I39854758"]}],"countries":["CA","NZ"],"is_corresponding":false,"raw_author_name":"Robert G. Beiko","raw_affiliation_strings":["1 School of Computing and Mathematical Sciences, Auckland University of Technology, Private Bag 92006, Auckland 1142, New Zealand and 2Faculty of Computer Science, Dalhousie University, 6050 University Avenue, Halifax, Nova Scotia, Canada B3H 1W5"],"affiliations":[{"raw_affiliation_string":"1 School of Computing and Mathematical Sciences, Auckland University of Technology, Private Bag 92006, Auckland 1142, New Zealand and 2Faculty of Computer Science, Dalhousie University, 6050 University Avenue, Halifax, Nova Scotia, Canada B3H 1W5","institution_ids":["https://openalex.org/I39854758","https://openalex.org/I129902397"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5007734757"],"corresponding_institution_ids":["https://openalex.org/I129902397","https://openalex.org/I39854758"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15997182,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"25","issue":"5","first_page":"672","last_page":"673"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10487","display_name":"Plant and animal studies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.8601769208908081},{"id":"https://openalex.org/keywords/character","display_name":"Character (mathematics)","score":0.78798508644104},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6630704998970032},{"id":"https://openalex.org/keywords/character-evolution","display_name":"Character evolution","score":0.6266490817070007},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.4354110062122345},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41744542121887207},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.4164651930332184},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.41315317153930664},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3333972692489624},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.3144422769546509},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21389642357826233},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17905762791633606},{"id":"https://openalex.org/keywords/clade","display_name":"Clade","score":0.1376827359199524}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8601769208908081},{"id":"https://openalex.org/C2780861071","wikidata":"https://www.wikidata.org/wiki/Q1062934","display_name":"Character (mathematics)","level":2,"score":0.78798508644104},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6630704998970032},{"id":"https://openalex.org/C2779267337","wikidata":"https://www.wikidata.org/wiki/Q19596352","display_name":"Character evolution","level":5,"score":0.6266490817070007},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.4354110062122345},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41744542121887207},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.4164651930332184},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41315317153930664},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3333972692489624},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.3144422769546509},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21389642357826233},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17905762791633606},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.1376827359199524},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp044","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/672/16892334/btp044.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19193733","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19193733","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:openrepository.aut.ac.nz:10292/18947","is_oa":false,"landing_page_url":"http://hdl.handle.net/10292/18947","pdf_url":null,"source":{"id":"https://openalex.org/S4306401809","display_name":"Tuwhera (Auckland University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39854758","host_organization_name":"Auckland University of Technology","host_organization_lineage":["https://openalex.org/I39854758"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp044","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/672/16892334/btp044.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G919846122","display_name":null,"funder_award_id":"Chair","funder_id":"https://openalex.org/F4320320994","funder_display_name":"Canada Research Chairs"}],"funders":[{"id":"https://openalex.org/F4320310339","display_name":"Auckland University of Technology, New Zealand","ror":"https://ror.org/01zvqw119"},{"id":"https://openalex.org/F4320320994","display_name":"Canada Research Chairs","ror":"https://ror.org/0517h6h17"},{"id":"https://openalex.org/F4320326645","display_name":"Genome Atlantic","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2145481313.pdf","grobid_xml":"https://content.openalex.org/works/W2145481313.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1828472190","https://openalex.org/W1971158963","https://openalex.org/W1991049526","https://openalex.org/W2100412820","https://openalex.org/W2124967403","https://openalex.org/W2161762698","https://openalex.org/W2163892779","https://openalex.org/W2400558456","https://openalex.org/W4254717640"],"related_works":["https://openalex.org/W2174809885","https://openalex.org/W2883025420","https://openalex.org/W2057191541","https://openalex.org/W2949296710","https://openalex.org/W1992658754","https://openalex.org/W2111939425","https://openalex.org/W2065083790","https://openalex.org/W2604174992","https://openalex.org/W2375383082","https://openalex.org/W2362218761"],"abstract_inverted_index":{"Radi\u00e9":[0],"is":[1,10],"freely":[2],"available":[3,11],"for":[4],"download":[5],"at":[6],"http://kiwi.cs.dal.ca/~beiko/software-and-data/radie;":[7],"source":[8],"code":[9],"upon":[12],"request":[13],"from":[14],"the":[15],"authors.":[16]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}