{"id":"https://openalex.org/W2158229944","doi":"https://doi.org/10.1093/bioinformatics/btp034","title":"CPSP-web-tools: a server for 3D lattice protein studies","display_name":"CPSP-web-tools: a server for 3D lattice protein studies","publication_year":2009,"publication_date":"2009-01-16","ids":{"openalex":"https://openalex.org/W2158229944","doi":"https://doi.org/10.1093/bioinformatics/btp034","mag":"2158229944","pmid":"https://pubmed.ncbi.nlm.nih.gov/19151096"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp034","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp034","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/676/48983047/bioinformatics_25_5_676.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/676/48983047/bioinformatics_25_5_676.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113973023","display_name":"Martin Mann","orcid":null},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]},{"id":"https://openalex.org/I96823368","display_name":"German University in Cairo","ror":"https://ror.org/03rjt0z37","country_code":"EG","type":"education","lineage":["https://openalex.org/I96823368"]}],"countries":["DE","EG"],"is_corresponding":true,"raw_author_name":"Martin Mann","raw_affiliation_strings":["1 Bioinformatics Group, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79016 Freiburg, Germany and 2German University in Cairo, Department of Computer Science, 5th Settlement New Cairo City, Cairo, Egypt"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Group, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79016 Freiburg, Germany and 2German University in Cairo, Department of Computer Science, 5th Settlement New Cairo City, Cairo, Egypt","institution_ids":["https://openalex.org/I161046081","https://openalex.org/I96823368"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006782507","display_name":"Cameron Smith","orcid":"https://orcid.org/0000-0001-9258-5226"},"institutions":[{"id":"https://openalex.org/I96823368","display_name":"German University in Cairo","ror":"https://ror.org/03rjt0z37","country_code":"EG","type":"education","lineage":["https://openalex.org/I96823368"]},{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE","EG"],"is_corresponding":false,"raw_author_name":"Cameron Smith","raw_affiliation_strings":["1 Bioinformatics Group, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79016 Freiburg, Germany and 2German University in Cairo, Department of Computer Science, 5th Settlement New Cairo City, Cairo, Egypt"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Group, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79016 Freiburg, Germany and 2German University in Cairo, Department of Computer Science, 5th Settlement New Cairo City, Cairo, Egypt","institution_ids":["https://openalex.org/I161046081","https://openalex.org/I96823368"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010513770","display_name":"Mohamad Rabbath","orcid":null},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]},{"id":"https://openalex.org/I96823368","display_name":"German University in Cairo","ror":"https://ror.org/03rjt0z37","country_code":"EG","type":"education","lineage":["https://openalex.org/I96823368"]}],"countries":["DE","EG"],"is_corresponding":false,"raw_author_name":"Mohamad Rabbath","raw_affiliation_strings":["1 Bioinformatics Group, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79016 Freiburg, Germany and 2German University in Cairo, Department of Computer Science, 5th Settlement New Cairo City, Cairo, Egypt"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Group, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79016 Freiburg, Germany and 2German University in Cairo, Department of Computer Science, 5th Settlement New Cairo City, Cairo, Egypt","institution_ids":["https://openalex.org/I161046081","https://openalex.org/I96823368"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035964135","display_name":"Marlien Edwards","orcid":null},"institutions":[{"id":"https://openalex.org/I96823368","display_name":"German University in Cairo","ror":"https://ror.org/03rjt0z37","country_code":"EG","type":"education","lineage":["https://openalex.org/I96823368"]},{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE","EG"],"is_corresponding":false,"raw_author_name":"Marlien Edwards","raw_affiliation_strings":["1 Bioinformatics Group, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79016 Freiburg, Germany and 2German University in Cairo, Department of Computer Science, 5th Settlement New Cairo City, Cairo, Egypt"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Group, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79016 Freiburg, Germany and 2German University in Cairo, Department of Computer Science, 5th Settlement New Cairo City, Cairo, Egypt","institution_ids":["https://openalex.org/I161046081","https://openalex.org/I96823368"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103135268","display_name":"Sebastian Will","orcid":"https://orcid.org/0000-0002-2376-9205"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]},{"id":"https://openalex.org/I96823368","display_name":"German University in Cairo","ror":"https://ror.org/03rjt0z37","country_code":"EG","type":"education","lineage":["https://openalex.org/I96823368"]}],"countries":["DE","EG"],"is_corresponding":false,"raw_author_name":"Sebastian Will","raw_affiliation_strings":["1 Bioinformatics Group, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79016 Freiburg, Germany and 2German University in Cairo, Department of Computer Science, 5th Settlement New Cairo City, Cairo, Egypt"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Group, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79016 Freiburg, Germany and 2German University in Cairo, Department of Computer Science, 5th Settlement New Cairo City, Cairo, Egypt","institution_ids":["https://openalex.org/I161046081","https://openalex.org/I96823368"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017672883","display_name":"Rolf Backofen","orcid":"https://orcid.org/0000-0001-8231-3323"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]},{"id":"https://openalex.org/I96823368","display_name":"German University in Cairo","ror":"https://ror.org/03rjt0z37","country_code":"EG","type":"education","lineage":["https://openalex.org/I96823368"]}],"countries":["DE","EG"],"is_corresponding":false,"raw_author_name":"Rolf Backofen","raw_affiliation_strings":["1 Bioinformatics Group, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79016 Freiburg, Germany and 2German University in Cairo, Department of Computer Science, 5th Settlement New Cairo City, Cairo, Egypt"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Group, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79016 Freiburg, Germany and 2German University in Cairo, Department of Computer Science, 5th Settlement New Cairo City, Cairo, Egypt","institution_ids":["https://openalex.org/I161046081","https://openalex.org/I96823368"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5113973023"],"corresponding_institution_ids":["https://openalex.org/I161046081","https://openalex.org/I96823368"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.6126,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.83193332,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"25","issue":"5","first_page":"676","last_page":"677"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6659644842147827},{"id":"https://openalex.org/keywords/lattice","display_name":"Lattice (music)","score":0.5578547120094299},{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.43796810507774353},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.42977219820022583},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4209005832672119},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.41924527287483215},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3365384340286255},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.1922840178012848},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18264910578727722},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.13430309295654297},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.12879538536071777},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.11850237846374512}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6659644842147827},{"id":"https://openalex.org/C2781204021","wikidata":"https://www.wikidata.org/wiki/Q6497091","display_name":"Lattice (music)","level":2,"score":0.5578547120094299},{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.43796810507774353},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.42977219820022583},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4209005832672119},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.41924527287483215},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3365384340286255},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.1922840178012848},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18264910578727722},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.13430309295654297},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.12879538536071777},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.11850237846374512},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btp034","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp034","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/676/48983047/bioinformatics_25_5_676.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19151096","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19151096","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:1414395","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2647832","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp034","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp034","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/676/48983047/bioinformatics_25_5_676.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.6000000238418579}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158229944.pdf","grobid_xml":"https://content.openalex.org/works/W2158229944.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1884233127","https://openalex.org/W2002930355","https://openalex.org/W2016088798","https://openalex.org/W2016461726","https://openalex.org/W2040411019","https://openalex.org/W2041149980","https://openalex.org/W2048583196","https://openalex.org/W2080382112","https://openalex.org/W2090243909","https://openalex.org/W2102654088","https://openalex.org/W2161974771","https://openalex.org/W2611927968"],"related_works":["https://openalex.org/W2807251790","https://openalex.org/W2378005410","https://openalex.org/W2048876619","https://openalex.org/W2799406489","https://openalex.org/W2170435352","https://openalex.org/W2049792449","https://openalex.org/W1570606890","https://openalex.org/W2123397376","https://openalex.org/W986251431","https://openalex.org/W2503798035"],"abstract_inverted_index":{"Free":[0],"access":[1],"at":[2],"http://cpsp.informatik.uni-freiburg.de":[3]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
