{"id":"https://openalex.org/W2117703503","doi":"https://doi.org/10.1093/bioinformatics/btp020","title":"SECISaln, a web-based tool for the creation of structure-based alignments of eukaryotic SECIS elements","display_name":"SECISaln, a web-based tool for the creation of structure-based alignments of eukaryotic SECIS elements","publication_year":2009,"publication_date":"2009-01-29","ids":{"openalex":"https://openalex.org/W2117703503","doi":"https://doi.org/10.1093/bioinformatics/btp020","mag":"2117703503","pmid":"https://pubmed.ncbi.nlm.nih.gov/19179357"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp020","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/674/48985108/bioinformatics_25_5_674.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/674/48985108/bioinformatics_25_5_674.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002346336","display_name":"Charles E. Chapple","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]},{"id":"https://openalex.org/I4210128885","display_name":"Architecture et R\u00e9activit\u00e9 de l'arN","ror":"https://ror.org/03xmjtz19","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210128885","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I4210158086","display_name":"Institut de Biologie Mol\u00e9culaire et Cellulaire","ror":"https://ror.org/05qpmg879","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210158086","https://openalex.org/I68947357"]}],"countries":["ES","FR"],"is_corresponding":true,"raw_author_name":"Charles E. Chapple","raw_affiliation_strings":["1 Institut Municipal d'Investigaci\u00f3 M\u00e9dica, 2Centre de Regulaci\u00f3 Gen\u00f3mica, Universitat Pompeu Fabra and Parc de Recerca Biomedica de Barcelona, Carrer del Doctor Aiguader 88, 08003, Barcelona, Catalonia, Spain and 3Unit\u00e9 Architecture et R\u00e9activit\u00e9 de l\u2032ARN, Universit\u00e9 Louis Pasteur de Strasbourg, CNRS, 15 rue Ren\u00e9 Descartes, F-67084 Strasbourg, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institut Municipal d'Investigaci\u00f3 M\u00e9dica, 2Centre de Regulaci\u00f3 Gen\u00f3mica, Universitat Pompeu Fabra and Parc de Recerca Biomedica de Barcelona, Carrer del Doctor Aiguader 88, 08003, Barcelona, Catalonia, Spain and 3Unit\u00e9 Architecture et R\u00e9activit\u00e9 de l\u2032ARN, Universit\u00e9 Louis Pasteur de Strasbourg, CNRS, 15 rue Ren\u00e9 Descartes, F-67084 Strasbourg, France","institution_ids":["https://openalex.org/I4210128885","https://openalex.org/I170486558","https://openalex.org/I2801864671","https://openalex.org/I1294671590","https://openalex.org/I4210158086"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067701434","display_name":"Roderic Guig\u00f3","orcid":"https://orcid.org/0000-0002-5738-4477"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]},{"id":"https://openalex.org/I4210128885","display_name":"Architecture et R\u00e9activit\u00e9 de l'arN","ror":"https://ror.org/03xmjtz19","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210128885","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I4210158086","display_name":"Institut de Biologie Mol\u00e9culaire et Cellulaire","ror":"https://ror.org/05qpmg879","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210158086","https://openalex.org/I68947357"]}],"countries":["ES","FR"],"is_corresponding":false,"raw_author_name":"Roderic Guig\u00f3","raw_affiliation_strings":["1 Institut Municipal d'Investigaci\u00f3 M\u00e9dica, 2Centre de Regulaci\u00f3 Gen\u00f3mica, Universitat Pompeu Fabra and Parc de Recerca Biomedica de Barcelona, Carrer del Doctor Aiguader 88, 08003, Barcelona, Catalonia, Spain and 3Unit\u00e9 Architecture et R\u00e9activit\u00e9 de l\u2032ARN, Universit\u00e9 Louis Pasteur de Strasbourg, CNRS, 15 rue Ren\u00e9 Descartes, F-67084 Strasbourg, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institut Municipal d'Investigaci\u00f3 M\u00e9dica, 2Centre de Regulaci\u00f3 Gen\u00f3mica, Universitat Pompeu Fabra and Parc de Recerca Biomedica de Barcelona, Carrer del Doctor Aiguader 88, 08003, Barcelona, Catalonia, Spain and 3Unit\u00e9 Architecture et R\u00e9activit\u00e9 de l\u2032ARN, Universit\u00e9 Louis Pasteur de Strasbourg, CNRS, 15 rue Ren\u00e9 Descartes, F-67084 Strasbourg, France","institution_ids":["https://openalex.org/I4210128885","https://openalex.org/I170486558","https://openalex.org/I2801864671","https://openalex.org/I1294671590","https://openalex.org/I4210158086"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084312705","display_name":"Alain Krol","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]},{"id":"https://openalex.org/I4210128885","display_name":"Architecture et R\u00e9activit\u00e9 de l'arN","ror":"https://ror.org/03xmjtz19","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210128885","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I4210158086","display_name":"Institut de Biologie Mol\u00e9culaire et Cellulaire","ror":"https://ror.org/05qpmg879","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210158086","https://openalex.org/I68947357"]}],"countries":["ES","FR"],"is_corresponding":false,"raw_author_name":"Alain Krol","raw_affiliation_strings":["1 Institut Municipal d'Investigaci\u00f3 M\u00e9dica, 2Centre de Regulaci\u00f3 Gen\u00f3mica, Universitat Pompeu Fabra and Parc de Recerca Biomedica de Barcelona, Carrer del Doctor Aiguader 88, 08003, Barcelona, Catalonia, Spain and 3Unit\u00e9 Architecture et R\u00e9activit\u00e9 de l\u2032ARN, Universit\u00e9 Louis Pasteur de Strasbourg, CNRS, 15 rue Ren\u00e9 Descartes, F-67084 Strasbourg, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institut Municipal d'Investigaci\u00f3 M\u00e9dica, 2Centre de Regulaci\u00f3 Gen\u00f3mica, Universitat Pompeu Fabra and Parc de Recerca Biomedica de Barcelona, Carrer del Doctor Aiguader 88, 08003, Barcelona, Catalonia, Spain and 3Unit\u00e9 Architecture et R\u00e9activit\u00e9 de l\u2032ARN, Universit\u00e9 Louis Pasteur de Strasbourg, CNRS, 15 rue Ren\u00e9 Descartes, F-67084 Strasbourg, France","institution_ids":["https://openalex.org/I4210128885","https://openalex.org/I170486558","https://openalex.org/I2801864671","https://openalex.org/I1294671590","https://openalex.org/I4210158086"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5002346336"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I170486558","https://openalex.org/I2801864671","https://openalex.org/I4210128885","https://openalex.org/I4210158086"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.0846,"has_fulltext":false,"cited_by_count":36,"citation_normalized_percentile":{"value":0.90897767,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"25","issue":"5","first_page":"674","last_page":"675"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11107","display_name":"Selenium in Biological Systems","score":0.9441999793052673,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11107","display_name":"Selenium in Biological Systems","score":0.9441999793052673,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12566","display_name":"Nitrogen and Sulfur Effects on Brassica","score":0.007600000128149986,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11931","display_name":"Organoselenium and organotellurium chemistry","score":0.006899999920278788,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5591737031936646},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.37367403507232666},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3602652847766876},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31764471530914307}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5591737031936646},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.37367403507232666},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3602652847766876},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31764471530914307}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018388","descriptor_name":"Codon, Terminator","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018388","descriptor_name":"Codon, Terminator","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018388","descriptor_name":"Codon, Terminator","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020413","descriptor_name":"3' Untranslated Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020413","descriptor_name":"3' Untranslated Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020413","descriptor_name":"3' Untranslated Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051140","descriptor_name":"Selenoproteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051140","descriptor_name":"Selenoproteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051140","descriptor_name":"Selenoproteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051140","descriptor_name":"Selenoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051140","descriptor_name":"Selenoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051140","descriptor_name":"Selenoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btp020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp020","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/674/48985108/bioinformatics_25_5_674.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19179357","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19179357","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-00372900v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00372900","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2009, 25 (5), pp.674-5. &#x27E8;10.1093/bioinformatics/btp020&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:1414394","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2647825","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp020","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/674/48985108/bioinformatics_25_5_674.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.699999988079071}],"awards":[],"funders":[{"id":"https://openalex.org/F4320312060","display_name":"Francis Crick Institute","ror":"https://ror.org/04tnbqb63"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1878307630","https://openalex.org/W1878987488","https://openalex.org/W1969664706","https://openalex.org/W1981268894","https://openalex.org/W2012010685","https://openalex.org/W2027933081","https://openalex.org/W2058868796","https://openalex.org/W2076004268","https://openalex.org/W2096570384","https://openalex.org/W2097637665","https://openalex.org/W2111846912","https://openalex.org/W2137362599","https://openalex.org/W2168433858","https://openalex.org/W6639306793","https://openalex.org/W6639368652"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W1971568933","https://openalex.org/W2013243191"],"abstract_inverted_index":{"SUMMARY:":[0],"Selenoproteins":[1],"contain":[2],"the":[3,27,34,38,53,60,72,82,88,101,106,110,114,146],"21st":[4],"amino":[5],"acid":[6],"selenocysteine":[7],"which":[8],"is":[9,154],"encoded":[10],"by":[11],"an":[12,30,91],"inframe":[13],"UGA":[14],"codon,":[15],"usually":[16],"read":[17],"as":[18,157],"a":[19,63,142,158],"stop.":[20],"In":[21,79],"eukaryotes,":[22],"its":[23],"co-translational":[24],"recoding":[25],"requires":[26],"presence":[28],"of":[29,42,62,67,74,96,105,113,125],"RNA":[31,108,149],"stem-loop":[32],"structure,":[33],"SECIS":[35,50,97,107,126],"element":[36],"in":[37],"3":[39],"untranslated":[40],"region":[41],"(UTR)":[43],"selenoprotein":[44,68,147],"mRNAs.":[45],"Despite":[46],"little":[47],"sequence":[48,77,94],"conservation,":[49],"elements":[51,98],"share":[52],"same":[54],"overall":[55],"secondary":[56,103,127],"structure.":[57],"Until":[58],"recently,":[59],"lack":[61],"significantly":[64],"high":[65],"number":[66],"mRNA":[69],"sequences":[70],"hampered":[71],"identification":[73],"other":[75],"potential":[76],"conservation.":[78],"this":[80],"work,":[81],"web-based":[83,159],"tool":[84,144,160],"SECISaln":[85,120,153],"provides":[86],"for":[87,145],"first":[89],"time":[90],"extensive":[92],"structure-based":[93],"alignment":[95],"resulting":[99],"from":[100],"well-defined":[102],"structure":[104,128],"and":[109,129,136,148],"increased":[111],"size":[112],"eukaryotic":[115],"selenoproteome.":[116],"We":[117],"have":[118],"used":[119],"to":[121,130],"improve":[122],"our":[123],"knowledge":[124],"discover":[131],"novel,":[132],"conserved":[133],"nucleotide":[134],"positions":[135],"we":[137],"believe":[138],"it":[139],"will":[140],"be":[141],"useful":[143],"scientific":[150],"communities.":[151],"AVAILABILITY:":[152],"freely":[155],"available":[156],"at":[161],"http://genome.crg.es/software/secisaln/.":[162]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-10T07:45:09.275182","created_date":"2025-10-10T00:00:00"}
