{"id":"https://openalex.org/W2123364467","doi":"https://doi.org/10.1093/bioinformatics/btp015","title":"A hierarchical model for incomplete alignments in phylogenetic inference","display_name":"A hierarchical model for incomplete alignments in phylogenetic inference","publication_year":2009,"publication_date":"2009-01-15","ids":{"openalex":"https://openalex.org/W2123364467","doi":"https://doi.org/10.1093/bioinformatics/btp015","mag":"2123364467","pmid":"https://pubmed.ncbi.nlm.nih.gov/19147663"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btp015","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp015","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/592/48985192/bioinformatics_25_5_592.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/592/48985192/bioinformatics_25_5_592.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001602203","display_name":"Fuxia Cheng","orcid":"https://orcid.org/0000-0003-4470-6657"},"institutions":[{"id":"https://openalex.org/I47301684","display_name":"Illinois State University","ror":"https://ror.org/050kcr883","country_code":"US","type":"education","lineage":["https://openalex.org/I47301684"]},{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]},{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Fuxia Cheng","raw_affiliation_strings":["1 Department of Mathematics, Illinois State University, Normal, IL, USA, 2Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany, 3Department of Biostatistics, Boston University, Boston, MA, 4Department of Biostatistics and 5Department of Biology, University of North Carolina at Chapel Hill, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics, Illinois State University, Normal, IL, USA, 2Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany, 3Department of Biostatistics, Boston University, Boston, MA, 4Department of Biostatistics and 5Department of Biology, University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177","https://openalex.org/I176453806","https://openalex.org/I111088046","https://openalex.org/I47301684"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026752416","display_name":"Stefanie Hartmann","orcid":null},"institutions":[{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]},{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]},{"id":"https://openalex.org/I47301684","display_name":"Illinois State University","ror":"https://ror.org/050kcr883","country_code":"US","type":"education","lineage":["https://openalex.org/I47301684"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Stefanie Hartmann","raw_affiliation_strings":["1 Department of Mathematics, Illinois State University, Normal, IL, USA, 2Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany, 3Department of Biostatistics, Boston University, Boston, MA, 4Department of Biostatistics and 5Department of Biology, University of North Carolina at Chapel Hill, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics, Illinois State University, Normal, IL, USA, 2Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany, 3Department of Biostatistics, Boston University, Boston, MA, 4Department of Biostatistics and 5Department of Biology, University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177","https://openalex.org/I176453806","https://openalex.org/I111088046","https://openalex.org/I47301684"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003955241","display_name":"Mayetri Gupta","orcid":"https://orcid.org/0000-0003-1052-6738"},"institutions":[{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]},{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]},{"id":"https://openalex.org/I47301684","display_name":"Illinois State University","ror":"https://ror.org/050kcr883","country_code":"US","type":"education","lineage":["https://openalex.org/I47301684"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Mayetri Gupta","raw_affiliation_strings":["1 Department of Mathematics, Illinois State University, Normal, IL, USA, 2Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany, 3Department of Biostatistics, Boston University, Boston, MA, 4Department of Biostatistics and 5Department of Biology, University of North Carolina at Chapel Hill, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics, Illinois State University, Normal, IL, USA, 2Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany, 3Department of Biostatistics, Boston University, Boston, MA, 4Department of Biostatistics and 5Department of Biology, University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177","https://openalex.org/I176453806","https://openalex.org/I111088046","https://openalex.org/I47301684"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078399867","display_name":"Joseph G. Ibrahim","orcid":"https://orcid.org/0000-0003-2428-6552"},"institutions":[{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]},{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]},{"id":"https://openalex.org/I47301684","display_name":"Illinois State University","ror":"https://ror.org/050kcr883","country_code":"US","type":"education","lineage":["https://openalex.org/I47301684"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Joseph G. Ibrahim","raw_affiliation_strings":["1 Department of Mathematics, Illinois State University, Normal, IL, USA, 2Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany, 3Department of Biostatistics, Boston University, Boston, MA, 4Department of Biostatistics and 5Department of Biology, University of North Carolina at Chapel Hill, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics, Illinois State University, Normal, IL, USA, 2Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany, 3Department of Biostatistics, Boston University, Boston, MA, 4Department of Biostatistics and 5Department of Biology, University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177","https://openalex.org/I176453806","https://openalex.org/I111088046","https://openalex.org/I47301684"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013911206","display_name":"Todd Vision","orcid":"https://orcid.org/0000-0002-6133-2581"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]},{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]},{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I47301684","display_name":"Illinois State University","ror":"https://ror.org/050kcr883","country_code":"US","type":"education","lineage":["https://openalex.org/I47301684"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Todd J. Vision","raw_affiliation_strings":["1 Department of Mathematics, Illinois State University, Normal, IL, USA, 2Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany, 3Department of Biostatistics, Boston University, Boston, MA, 4Department of Biostatistics and 5Department of Biology, University of North Carolina at Chapel Hill, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics, Illinois State University, Normal, IL, USA, 2Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany, 3Department of Biostatistics, Boston University, Boston, MA, 4Department of Biostatistics and 5Department of Biology, University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177","https://openalex.org/I176453806","https://openalex.org/I111088046","https://openalex.org/I47301684"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5001602203"],"corresponding_institution_ids":["https://openalex.org/I111088046","https://openalex.org/I114027177","https://openalex.org/I176453806","https://openalex.org/I47301684"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.1348,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.55550623,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"25","issue":"5","first_page":"592","last_page":"598"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9810000061988831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6988371014595032},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.6393625736236572},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.5727671384811401},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5605115294456482},{"id":"https://openalex.org/keywords/missing-data","display_name":"Missing data","score":0.5199890732765198},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.5015528202056885},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4973733723163605},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4907854497432709},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.48631152510643005},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4548623263835907},{"id":"https://openalex.org/keywords/statistical-model","display_name":"Statistical model","score":0.4216923117637634},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.39360511302948},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.38424810767173767},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38213199377059937},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38077467679977417},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29472339153289795},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24705684185028076},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2104378044605255},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.1966036558151245},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19111207127571106},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.09213253855705261}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6988371014595032},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.6393625736236572},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.5727671384811401},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5605115294456482},{"id":"https://openalex.org/C9357733","wikidata":"https://www.wikidata.org/wiki/Q6878417","display_name":"Missing data","level":2,"score":0.5199890732765198},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.5015528202056885},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4973733723163605},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4907854497432709},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.48631152510643005},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4548623263835907},{"id":"https://openalex.org/C114289077","wikidata":"https://www.wikidata.org/wiki/Q3284399","display_name":"Statistical model","level":2,"score":0.4216923117637634},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39360511302948},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.38424810767173767},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38213199377059937},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38077467679977417},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29472339153289795},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24705684185028076},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2104378044605255},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.1966036558151245},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19111207127571106},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.09213253855705261},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btp015","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp015","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/592/48985192/bioinformatics_25_5_592.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19147663","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19147663","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:edoc.mpg.de:459968","is_oa":false,"landing_page_url":"http://edoc.mpg.de/459968","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, v.25, 592-598 (2009)","raw_type":"Article"},{"id":"pmh:oai:eprints.gla.ac.uk:69073","is_oa":false,"landing_page_url":"http://eprints.gla.ac.uk/69073/","pdf_url":null,"source":{"id":"https://openalex.org/S4210235606","display_name":"ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)","issn_l":"2622-8912","issn":["2622-8912","2622-8920"],"is_oa":false,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Articles"},{"id":"pmh:oai:kobv.de-opus4-uni-potsdam:31606","is_oa":false,"landing_page_url":"https://publishup.uni-potsdam.de/frontdoor/index/index/docId/31606","pdf_url":null,"source":{"id":"https://openalex.org/S4306400594","display_name":"publish.UP (University of Potsdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I176453806","host_organization_name":"University of Potsdam","host_organization_lineage":["https://openalex.org/I176453806"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"doc-type:article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2647833","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2647833","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.mpg.de:item_1815578","is_oa":false,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-0014-260B-9","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btp015","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btp015","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/592/48985192/bioinformatics_25_5_592.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1247444107","display_name":null,"funder_award_id":"70335","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3832589609","display_name":"YIA-PGR: Tools for Plant Comparative Genomics","funder_award_id":"0227314","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2123364467.pdf","grobid_xml":"https://content.openalex.org/works/W2123364467.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W25367234","https://openalex.org/W41222772","https://openalex.org/W1546639740","https://openalex.org/W1981446894","https://openalex.org/W1986481982","https://openalex.org/W1991307293","https://openalex.org/W1991821268","https://openalex.org/W1999279928","https://openalex.org/W2000359198","https://openalex.org/W2001219812","https://openalex.org/W2017519756","https://openalex.org/W2019182846","https://openalex.org/W2039245568","https://openalex.org/W2047479519","https://openalex.org/W2053667914","https://openalex.org/W2067983424","https://openalex.org/W2068225247","https://openalex.org/W2085660114","https://openalex.org/W2089735371","https://openalex.org/W2097386339","https://openalex.org/W2099002894","https://openalex.org/W2099412910","https://openalex.org/W2113601822","https://openalex.org/W2116007667","https://openalex.org/W2116632820","https://openalex.org/W2123653399","https://openalex.org/W2124105487","https://openalex.org/W2124815061","https://openalex.org/W2124908487","https://openalex.org/W2127063840","https://openalex.org/W2127166992","https://openalex.org/W2129773391","https://openalex.org/W2145118663","https://openalex.org/W2148931528","https://openalex.org/W2151690408","https://openalex.org/W2152933358","https://openalex.org/W2155745416","https://openalex.org/W2162725264","https://openalex.org/W2164887069","https://openalex.org/W2167193190","https://openalex.org/W2167455933","https://openalex.org/W2178329765","https://openalex.org/W2316574777","https://openalex.org/W2582743722","https://openalex.org/W3217097258","https://openalex.org/W4231070980","https://openalex.org/W4233359534","https://openalex.org/W4243026602","https://openalex.org/W4244818997","https://openalex.org/W4255949132","https://openalex.org/W6654563908","https://openalex.org/W6662298076","https://openalex.org/W6681458114"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2111937814","https://openalex.org/W2162923930","https://openalex.org/W1482324242","https://openalex.org/W2133116680","https://openalex.org/W2091678889","https://openalex.org/W2029514038","https://openalex.org/W2149492307","https://openalex.org/W1985408726","https://openalex.org/W2141411672"],"abstract_inverted_index":{"R":[0],"code":[1],"for":[2],"fitting":[3],"these":[4],"models":[5],"are":[6],"available":[7],"from:":[8],"http://people.bu.edu/gupta/software.htm.":[9]},"counts_by_year":[{"year":2022,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}