{"id":"https://openalex.org/W2167076445","doi":"https://doi.org/10.1093/bioinformatics/btn659","title":"Biodiversity informatics: automated approaches for documenting global biodiversity patterns and processes","display_name":"Biodiversity informatics: automated approaches for documenting global biodiversity patterns and processes","publication_year":2009,"publication_date":"2009-01-06","ids":{"openalex":"https://openalex.org/W2167076445","doi":"https://doi.org/10.1093/bioinformatics/btn659","mag":"2167076445","pmid":"https://pubmed.ncbi.nlm.nih.gov/19129210"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn659","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn659","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/4/421/48983950/bioinformatics_25_4_421.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/4/421/48983950/bioinformatics_25_4_421.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017811194","display_name":"Robert Guralnick","orcid":"https://orcid.org/0000-0001-6682-1504"},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]},{"id":"https://openalex.org/I4210094585","display_name":"Museum of Boulder","ror":"https://ror.org/00mmgjm27","country_code":"US","type":"archive","lineage":["https://openalex.org/I4210094585"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Robert Guralnick","raw_affiliation_strings":["1 University of Colorado Museum of Natural History and 2Department of Ecology and Evolutionary Biology, University of Colorado Boulder, Boulder, CO 80309-0265, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 University of Colorado Museum of Natural History and 2Department of Ecology and Evolutionary Biology, University of Colorado Boulder, Boulder, CO 80309-0265, USA","institution_ids":["https://openalex.org/I4210094585","https://openalex.org/I188538660"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079062994","display_name":"Andrew Hill","orcid":"https://orcid.org/0000-0001-5468-6616"},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]},{"id":"https://openalex.org/I4210094585","display_name":"Museum of Boulder","ror":"https://ror.org/00mmgjm27","country_code":"US","type":"archive","lineage":["https://openalex.org/I4210094585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Hill","raw_affiliation_strings":["1 University of Colorado Museum of Natural History and 2Department of Ecology and Evolutionary Biology, University of Colorado Boulder, Boulder, CO 80309-0265, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 University of Colorado Museum of Natural History and 2Department of Ecology and Evolutionary Biology, University of Colorado Boulder, Boulder, CO 80309-0265, USA","institution_ids":["https://openalex.org/I4210094585","https://openalex.org/I188538660"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5017811194"],"corresponding_institution_ids":["https://openalex.org/I188538660","https://openalex.org/I4210094585"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":9.9734,"has_fulltext":false,"cited_by_count":95,"citation_normalized_percentile":{"value":0.97563732,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"25","issue":"4","first_page":"421","last_page":"428"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.7124999761581421,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.7124999761581421,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.08330000191926956,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.03150000050663948,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biodiversity","display_name":"Biodiversity","score":0.8168770670890808},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5317324995994568},{"id":"https://openalex.org/keywords/measurement-of-biodiversity","display_name":"Measurement of biodiversity","score":0.5111621022224426},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.504135012626648},{"id":"https://openalex.org/keywords/global-biodiversity","display_name":"Global biodiversity","score":0.4582172930240631},{"id":"https://openalex.org/keywords/barcode","display_name":"Barcode","score":0.42841532826423645},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.3474828600883484},{"id":"https://openalex.org/keywords/environmental-resource-management","display_name":"Environmental resource management","score":0.3357055187225342},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3224782943725586},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.25030869245529175},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19195309281349182}],"concepts":[{"id":"https://openalex.org/C130217890","wikidata":"https://www.wikidata.org/wiki/Q47041","display_name":"Biodiversity","level":2,"score":0.8168770670890808},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5317324995994568},{"id":"https://openalex.org/C112276597","wikidata":"https://www.wikidata.org/wiki/Q16191822","display_name":"Measurement of biodiversity","level":4,"score":0.5111621022224426},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.504135012626648},{"id":"https://openalex.org/C187604713","wikidata":"https://www.wikidata.org/wiki/Q5570810","display_name":"Global biodiversity","level":3,"score":0.4582172930240631},{"id":"https://openalex.org/C2776841711","wikidata":"https://www.wikidata.org/wiki/Q856","display_name":"Barcode","level":2,"score":0.42841532826423645},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.3474828600883484},{"id":"https://openalex.org/C107826830","wikidata":"https://www.wikidata.org/wiki/Q929380","display_name":"Environmental resource management","level":1,"score":0.3357055187225342},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3224782943725586},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.25030869245529175},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19195309281349182},{"id":"https://openalex.org/C39432304","wikidata":"https://www.wikidata.org/wiki/Q188847","display_name":"Environmental science","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C2994246104","wikidata":"https://www.wikidata.org/wiki/Q641498","display_name":"Biodiversity conservation","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011157","descriptor_name":"Population Dynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011157","descriptor_name":"Population Dynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011157","descriptor_name":"Population Dynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btn659","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn659","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/4/421/48983950/bioinformatics_25_4_421.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19129210","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19129210","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn659","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn659","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/4/421/48983950/bioinformatics_25_4_421.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.75}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306202","display_name":"Gordon and Betty Moore Foundation","ror":"https://ror.org/006wxqw41"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2167076445.pdf"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W143084325","https://openalex.org/W1525848930","https://openalex.org/W1662177399","https://openalex.org/W1977401975","https://openalex.org/W1978740612","https://openalex.org/W1982790634","https://openalex.org/W1991865146","https://openalex.org/W2010614057","https://openalex.org/W2010663300","https://openalex.org/W2013859913","https://openalex.org/W2023431627","https://openalex.org/W2035791470","https://openalex.org/W2035898274","https://openalex.org/W2050723103","https://openalex.org/W2050888782","https://openalex.org/W2052638947","https://openalex.org/W2054817587","https://openalex.org/W2059303213","https://openalex.org/W2061477008","https://openalex.org/W2062171435","https://openalex.org/W2063610533","https://openalex.org/W2064003648","https://openalex.org/W2076821547","https://openalex.org/W2085993663","https://openalex.org/W2086886740","https://openalex.org/W2088969567","https://openalex.org/W2093025094","https://openalex.org/W2101654334","https://openalex.org/W2102299211","https://openalex.org/W2103961200","https://openalex.org/W2105623869","https://openalex.org/W2107391729","https://openalex.org/W2111954076","https://openalex.org/W2115099498","https://openalex.org/W2116241235","https://openalex.org/W2117044870","https://openalex.org/W2118658535","https://openalex.org/W2120160157","https://openalex.org/W2121290602","https://openalex.org/W2121744618","https://openalex.org/W2124516299","https://openalex.org/W2128506197","https://openalex.org/W2130398128","https://openalex.org/W2131687730","https://openalex.org/W2131750347","https://openalex.org/W2134403593","https://openalex.org/W2136198635","https://openalex.org/W2151158825","https://openalex.org/W2156052711","https://openalex.org/W2158753355","https://openalex.org/W2161661053","https://openalex.org/W2166655850","https://openalex.org/W2167277313","https://openalex.org/W2168696662","https://openalex.org/W2181746830","https://openalex.org/W2319666486","https://openalex.org/W2803617384","https://openalex.org/W2953091697","https://openalex.org/W3144165391","https://openalex.org/W4211098915","https://openalex.org/W4232086814","https://openalex.org/W6605837975"],"related_works":["https://openalex.org/W2467209196","https://openalex.org/W2529663620","https://openalex.org/W2617501800","https://openalex.org/W2376610666","https://openalex.org/W4320517258","https://openalex.org/W4246177954","https://openalex.org/W2010063655","https://openalex.org/W2337499440","https://openalex.org/W2070822608","https://openalex.org/W2148365367"],"abstract_inverted_index":{"MOTIVATION:":[0],"Data":[1],"about":[2],"biodiversity":[3,24,67,97,110,117,128,135],"have":[4],"been":[5],"scattered":[6],"in":[7,10,150],"different":[8],"formats":[9],"natural":[11],"history":[12],"collections,":[13],"survey":[14],"reports":[15],"and":[16,34,39,61,64,68,112,127,187,200,205],"the":[17,23,30,40,72,145,185,195,206],"literature.":[18],"A":[19,175,204],"central":[20],"challenge":[21],"for":[22,197,208],"informatics":[25],"community":[26],"is":[27],"to":[28,32,45,85,131,152,179,212],"provide":[29,43,59,180],"means":[31],"share":[33],"rapidly":[35],"synthesize":[36],"these":[37,191],"data":[38,63,142,216],"knowledge":[41],"they":[42],"us":[44],"build":[46],"an":[47,181],"easily":[48],"accessible,":[49],"unified":[50,88],"global":[51,89],"map":[52,57,90],"of":[53,82,91,147,157,173,184,190,202,214,221],"biodiversity.":[54,92],"Such":[55],"a":[56,80,87],"would":[58],"raw":[60],"summary":[62],"information":[65],"on":[66],"its":[69],"change":[70],"across":[71],"world":[73],"at":[74],"multiple":[75],"scales.":[76],"RESULTS:":[77],"We":[78,119],"discuss":[79],"series":[81],"steps":[83,94],"required":[84],"create":[86],"These":[93],"include:":[95],"building":[96],"repositories;":[98],"creating":[99,104],"scalable":[100],"species":[101,154],"distribution":[102],"maps;":[103],"flexible,":[105],"user-programmable":[106],"pipelines":[107],"which":[108],"enable":[109],"assessment;":[111],"integrating":[113],"phylogenetic":[114],"approaches":[115,130],"into":[116,162],"assessment.":[118],"show":[120],"two":[121],"case":[122,139,168,222],"studies":[123,223],"that":[124],"combine":[125],"phyloinformatic":[126],"informatic":[129],"document":[132],"large":[133],"scale":[134],"patterns.":[136],"The":[137,166],"first":[138],"study":[140,169],"uses":[141,170],"available":[143,176,218],"from":[144,177],"Barcode":[146,213],"Life":[148,215],"initiative":[149],"order":[151],"make":[153],"conservation":[155],"assessment":[156],"North":[158],"American":[159],"birds":[160],"taking":[161],"account":[163],"evolutionary":[164],"uniqueness.":[165],"second":[167],"full":[171],"genomes":[172],"influenza":[174,203],"Genbank":[178],"auto-updating":[182],"documentation":[183],"evolution":[186,199],"geographic":[188],"spread":[189,201],"viruses.":[192],"AVAILABILITY:":[193],"Both":[194],"website":[196,207],"tracking":[198],"applying":[209],"phyloinformatics":[210],"analysis":[211],"are":[217],"as":[219],"outcomes":[220],"(http://biodiversity.colorado.edu).":[224]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":10}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}