{"id":"https://openalex.org/W2125487751","doi":"https://doi.org/10.1093/bioinformatics/btn653","title":"SNPnexus: a web database for functional annotation of newly discovered and public domain single nucleotide polymorphisms","display_name":"SNPnexus: a web database for functional annotation of newly discovered and public domain single nucleotide polymorphisms","publication_year":2008,"publication_date":"2008-12-19","ids":{"openalex":"https://openalex.org/W2125487751","doi":"https://doi.org/10.1093/bioinformatics/btn653","mag":"2125487751","pmid":"https://pubmed.ncbi.nlm.nih.gov/19098027"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn653","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn653","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/655/48984507/bioinformatics_25_5_655.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/655/48984507/bioinformatics_25_5_655.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072249752","display_name":"Claude Chelala","orcid":"https://orcid.org/0000-0002-2488-0669"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Claude Chelala","raw_affiliation_strings":["Centre for Molecular Oncology and Imaging, Institute of Cancer & CR-UK Clinical Centre, Barts & The London School of Medicine (QMUL), Charterhouse Square, London EC1M 6BQ, UK"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Oncology and Imaging, Institute of Cancer & CR-UK Clinical Centre, Barts & The London School of Medicine (QMUL), Charterhouse Square, London EC1M 6BQ, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067901451","display_name":"Arshad Khan","orcid":"https://orcid.org/0000-0002-4910-843X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Arshad Khan","raw_affiliation_strings":["Centre for Molecular Oncology and Imaging, Institute of Cancer & CR-UK Clinical Centre, Barts & The London School of Medicine (QMUL), Charterhouse Square, London EC1M 6BQ, UK"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Oncology and Imaging, Institute of Cancer & CR-UK Clinical Centre, Barts & The London School of Medicine (QMUL), Charterhouse Square, London EC1M 6BQ, UK","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025477800","display_name":"Nicholas R. Lemoine","orcid":"https://orcid.org/0000-0001-8675-058X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nicholas R Lemoine","raw_affiliation_strings":["Centre for Molecular Oncology and Imaging, Institute of Cancer & CR-UK Clinical Centre, Barts & The London School of Medicine (QMUL), Charterhouse Square, London EC1M 6BQ, UK"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Oncology and Imaging, Institute of Cancer & CR-UK Clinical Centre, Barts & The London School of Medicine (QMUL), Charterhouse Square, London EC1M 6BQ, UK","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5072249752"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.3085,"has_fulltext":true,"cited_by_count":224,"citation_normalized_percentile":{"value":0.92615776,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"25","issue":"5","first_page":"655","last_page":"661"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dbsnp","display_name":"dbSNP","score":0.9248770475387573},{"id":"https://openalex.org/keywords/international-hapmap-project","display_name":"International HapMap Project","score":0.8193985223770142},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7624326944351196},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.5182904601097107},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4969787895679474},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.40194064378738403},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.399441659450531},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3576210141181946},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34648171067237854},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2706424593925476},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.1856115162372589},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11030775308609009}],"concepts":[{"id":"https://openalex.org/C35794970","wikidata":"https://www.wikidata.org/wiki/Q5243761","display_name":"dbSNP","level":5,"score":0.9248770475387573},{"id":"https://openalex.org/C177580304","wikidata":"https://www.wikidata.org/wiki/Q1147298","display_name":"International HapMap Project","level":5,"score":0.8193985223770142},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7624326944351196},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.5182904601097107},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4969787895679474},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.40194064378738403},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.399441659450531},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3576210141181946},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34648171067237854},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2706424593925476},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.1856115162372589},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11030775308609009}],"mesh":[{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btn653","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn653","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/655/48984507/bioinformatics_25_5_655.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19098027","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19098027","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2647830","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2647830","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn653","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn653","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/5/655/48984507/bioinformatics_25_5_655.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.6000000238418579}],"awards":[],"funders":[{"id":"https://openalex.org/F4320319985","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2125487751.pdf","grobid_xml":"https://content.openalex.org/works/W2125487751.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W1491989688","https://openalex.org/W1977164609","https://openalex.org/W1980748010","https://openalex.org/W1985738984","https://openalex.org/W1997954369","https://openalex.org/W2009729495","https://openalex.org/W2013128868","https://openalex.org/W2013221974","https://openalex.org/W2014606320","https://openalex.org/W2015849111","https://openalex.org/W2027547437","https://openalex.org/W2044110911","https://openalex.org/W2048296798","https://openalex.org/W2059073003","https://openalex.org/W2061636126","https://openalex.org/W2080292758","https://openalex.org/W2081685795","https://openalex.org/W2083381199","https://openalex.org/W2085755265","https://openalex.org/W2087198772","https://openalex.org/W2089251117","https://openalex.org/W2093245824","https://openalex.org/W2095907724","https://openalex.org/W2105269157","https://openalex.org/W2107903949","https://openalex.org/W2109372707","https://openalex.org/W2116753165","https://openalex.org/W2119279196","https://openalex.org/W2122732537","https://openalex.org/W2124873881","https://openalex.org/W2125879257","https://openalex.org/W2127334402","https://openalex.org/W2130395351","https://openalex.org/W2130919037","https://openalex.org/W2135836598","https://openalex.org/W2137257434","https://openalex.org/W2140115103","https://openalex.org/W2142155452","https://openalex.org/W2146750742","https://openalex.org/W2147505003","https://openalex.org/W2152320398","https://openalex.org/W2153512780","https://openalex.org/W2154350017","https://openalex.org/W2155707112","https://openalex.org/W2159091117","https://openalex.org/W2161062388","https://openalex.org/W2163199119","https://openalex.org/W2169349361","https://openalex.org/W4210241463","https://openalex.org/W4233912639","https://openalex.org/W4251079740","https://openalex.org/W6674468794"],"related_works":["https://openalex.org/W1576081620","https://openalex.org/W2017507057","https://openalex.org/W172227456","https://openalex.org/W2901592770","https://openalex.org/W1539262549","https://openalex.org/W2312416044","https://openalex.org/W3135778578","https://openalex.org/W2352434324","https://openalex.org/W1978000554","https://openalex.org/W2158502588"],"abstract_inverted_index":{"The":[0],"SNPnexus":[1],"database":[2],"is":[3],"freely":[4],"available":[5],"at":[6],"http://www.snp-nexus.org.":[7]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":18},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":23},{"year":2012,"cited_by_count":20}],"updated_date":"2026-03-24T08:02:53.985720","created_date":"2025-10-10T00:00:00"}
