{"id":"https://openalex.org/W2132288458","doi":"https://doi.org/10.1093/bioinformatics/btn631","title":"Evaluating contributions of natural language parsers to protein\u2013protein interaction extraction","display_name":"Evaluating contributions of natural language parsers to protein\u2013protein interaction extraction","publication_year":2008,"publication_date":"2008-12-09","ids":{"openalex":"https://openalex.org/W2132288458","doi":"https://doi.org/10.1093/bioinformatics/btn631","mag":"2132288458","pmid":"https://pubmed.ncbi.nlm.nih.gov/19073593"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn631","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn631","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/3/394/48982962/bioinformatics_25_3_394.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/3/394/48982962/bioinformatics_25_3_394.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004444958","display_name":"Yusuke Miyao","orcid":"https://orcid.org/0000-0002-0678-3400"},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4210087747","display_name":"Creative Technologies (United States)","ror":"https://ror.org/001qkb777","country_code":"US","type":"company","lineage":["https://openalex.org/I4210087747"]}],"countries":["GB","JP","US"],"is_corresponding":true,"raw_author_name":"Yusuke Miyao","raw_affiliation_strings":["1 Department of Computer Science, University of Tokyo, Tokyo, Japan, 2Institute for Creative Technologies, University of Southern California, CA, USA, 3School of Computer Science, University of Manchester and 4National Center for Text Mining, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, University of Tokyo, Tokyo, Japan, 2Institute for Creative Technologies, University of Southern California, CA, USA, 3School of Computer Science, University of Manchester and 4National Center for Text Mining, Manchester, UK","institution_ids":["https://openalex.org/I4210087747","https://openalex.org/I28407311","https://openalex.org/I161296585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070742827","display_name":"Kenji Sagae","orcid":"https://orcid.org/0000-0003-3371-0618"},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4210087747","display_name":"Creative Technologies (United States)","ror":"https://ror.org/001qkb777","country_code":"US","type":"company","lineage":["https://openalex.org/I4210087747"]}],"countries":["GB","JP","US"],"is_corresponding":false,"raw_author_name":"Kenji Sagae","raw_affiliation_strings":["1 Department of Computer Science, University of Tokyo, Tokyo, Japan, 2Institute for Creative Technologies, University of Southern California, CA, USA, 3School of Computer Science, University of Manchester and 4National Center for Text Mining, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, University of Tokyo, Tokyo, Japan, 2Institute for Creative Technologies, University of Southern California, CA, USA, 3School of Computer Science, University of Manchester and 4National Center for Text Mining, Manchester, UK","institution_ids":["https://openalex.org/I4210087747","https://openalex.org/I28407311","https://openalex.org/I161296585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044967495","display_name":"Rune S\u00e6tre","orcid":null},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4210087747","display_name":"Creative Technologies (United States)","ror":"https://ror.org/001qkb777","country_code":"US","type":"company","lineage":["https://openalex.org/I4210087747"]}],"countries":["GB","JP","US"],"is_corresponding":false,"raw_author_name":"Rune S\u00e6tre","raw_affiliation_strings":["1 Department of Computer Science, University of Tokyo, Tokyo, Japan, 2Institute for Creative Technologies, University of Southern California, CA, USA, 3School of Computer Science, University of Manchester and 4National Center for Text Mining, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, University of Tokyo, Tokyo, Japan, 2Institute for Creative Technologies, University of Southern California, CA, USA, 3School of Computer Science, University of Manchester and 4National Center for Text Mining, Manchester, UK","institution_ids":["https://openalex.org/I4210087747","https://openalex.org/I28407311","https://openalex.org/I161296585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016823828","display_name":"Takuya Matsuzaki","orcid":"https://orcid.org/0000-0002-7425-4914"},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4210087747","display_name":"Creative Technologies (United States)","ror":"https://ror.org/001qkb777","country_code":"US","type":"company","lineage":["https://openalex.org/I4210087747"]}],"countries":["GB","JP","US"],"is_corresponding":false,"raw_author_name":"Takuya Matsuzaki","raw_affiliation_strings":["1 Department of Computer Science, University of Tokyo, Tokyo, Japan, 2Institute for Creative Technologies, University of Southern California, CA, USA, 3School of Computer Science, University of Manchester and 4National Center for Text Mining, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, University of Tokyo, Tokyo, Japan, 2Institute for Creative Technologies, University of Southern California, CA, USA, 3School of Computer Science, University of Manchester and 4National Center for Text Mining, Manchester, UK","institution_ids":["https://openalex.org/I4210087747","https://openalex.org/I28407311","https://openalex.org/I161296585"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112241147","display_name":"Jun\u2019ichi Tsujii","orcid":null},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4210087747","display_name":"Creative Technologies (United States)","ror":"https://ror.org/001qkb777","country_code":"US","type":"company","lineage":["https://openalex.org/I4210087747"]}],"countries":["GB","JP","US"],"is_corresponding":false,"raw_author_name":"Jun'ichi Tsujii","raw_affiliation_strings":["1 Department of Computer Science, University of Tokyo, Tokyo, Japan, 2Institute for Creative Technologies, University of Southern California, CA, USA, 3School of Computer Science, University of Manchester and 4National Center for Text Mining, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, University of Tokyo, Tokyo, Japan, 2Institute for Creative Technologies, University of Southern California, CA, USA, 3School of Computer Science, University of Manchester and 4National Center for Text Mining, Manchester, UK","institution_ids":["https://openalex.org/I4210087747","https://openalex.org/I28407311","https://openalex.org/I161296585"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5004444958"],"corresponding_institution_ids":["https://openalex.org/I161296585","https://openalex.org/I28407311","https://openalex.org/I4210087747"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":8.2835,"has_fulltext":true,"cited_by_count":160,"citation_normalized_percentile":{"value":0.98307435,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"25","issue":"3","first_page":"394","last_page":"400"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.0026000000070780516,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.0017000000225380063,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.8893756866455078},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8730305433273315},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.7178719639778137},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6535742282867432},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5629708766937256},{"id":"https://openalex.org/keywords/popularity","display_name":"Popularity","score":0.4977007210254669},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.44591453671455383},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.44125938415527344},{"id":"https://openalex.org/keywords/automatic-summarization","display_name":"Automatic summarization","score":0.42054450511932373}],"concepts":[{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.8893756866455078},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8730305433273315},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.7178719639778137},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6535742282867432},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5629708766937256},{"id":"https://openalex.org/C2780586970","wikidata":"https://www.wikidata.org/wiki/Q1357284","display_name":"Popularity","level":2,"score":0.4977007210254669},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.44591453671455383},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.44125938415527344},{"id":"https://openalex.org/C170858558","wikidata":"https://www.wikidata.org/wiki/Q1394144","display_name":"Automatic summarization","level":2,"score":0.42054450511932373},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btn631","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn631","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/3/394/48982962/bioinformatics_25_3_394.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19073593","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19073593","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:ark:/13030/qt37x469pw","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt37x469pw","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/37x469pw","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics (Oxford, England), vol 25, iss 3","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2639072","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2639072","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn631","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn631","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/3/394/48982962/bioinformatics_25_3_394.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8199999928474426,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2132288458.pdf","grobid_xml":"https://content.openalex.org/works/W2132288458.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W102233799","https://openalex.org/W108437174","https://openalex.org/W136741500","https://openalex.org/W151685798","https://openalex.org/W192665053","https://openalex.org/W194033037","https://openalex.org/W224064951","https://openalex.org/W1493270114","https://openalex.org/W1508977358","https://openalex.org/W1535015163","https://openalex.org/W1580184797","https://openalex.org/W1604685658","https://openalex.org/W1607035479","https://openalex.org/W1632114991","https://openalex.org/W1648311451","https://openalex.org/W1850865022","https://openalex.org/W1965893653","https://openalex.org/W1967147081","https://openalex.org/W1968920591","https://openalex.org/W1985754308","https://openalex.org/W1987170279","https://openalex.org/W2018874418","https://openalex.org/W2035574008","https://openalex.org/W2038248725","https://openalex.org/W2047782770","https://openalex.org/W2052449326","https://openalex.org/W2096489769","https://openalex.org/W2097606805","https://openalex.org/W2097960255","https://openalex.org/W2104088268","https://openalex.org/W2116159459","https://openalex.org/W2124772738","https://openalex.org/W2125712079","https://openalex.org/W2129712609","https://openalex.org/W2136332941","https://openalex.org/W2140526624","https://openalex.org/W2141605886","https://openalex.org/W2153274216","https://openalex.org/W2163362093","https://openalex.org/W2166474856","https://openalex.org/W2223822490","https://openalex.org/W2399295001","https://openalex.org/W2569308312","https://openalex.org/W2601748485","https://openalex.org/W2740887992","https://openalex.org/W2788605292","https://openalex.org/W2914181088","https://openalex.org/W3147442204","https://openalex.org/W3150338048","https://openalex.org/W4297809627","https://openalex.org/W6604196984","https://openalex.org/W6604455236","https://openalex.org/W6607972337","https://openalex.org/W6629460809","https://openalex.org/W6632145054","https://openalex.org/W6634730879","https://openalex.org/W6636363920","https://openalex.org/W6636649193","https://openalex.org/W6662590293","https://openalex.org/W6667202976","https://openalex.org/W6677722505","https://openalex.org/W6678739045","https://openalex.org/W6679692148","https://openalex.org/W6680702787","https://openalex.org/W6682535725","https://openalex.org/W6732118377"],"related_works":["https://openalex.org/W2368605798","https://openalex.org/W2366403280","https://openalex.org/W1495108544","https://openalex.org/W2091301346","https://openalex.org/W2518037665","https://openalex.org/W3148229873","https://openalex.org/W2150160875","https://openalex.org/W4242223894","https://openalex.org/W1517524280","https://openalex.org/W2003578783"],"abstract_inverted_index":{"MOTIVATION:":[0],"While":[1],"text":[2,24],"mining":[3],"technologies":[4],"for":[5,39],"biomedical":[6,27,72],"research":[7],"have":[8],"gained":[9],"popularity":[10],"as":[11,92],"a":[12,53,93,96],"way":[13],"to":[14,84],"take":[15],"advantage":[16],"of":[17,21,56,66,107,112],"the":[18,64,88,101,151,156,160],"explosive":[19],"growth":[20],"information":[22],"in":[23,26,48,95,105,123,131,169],"form":[25],"papers,":[28],"selecting":[29],"appropriate":[30],"natural":[31,59],"language":[32,60],"processing":[33],"(NLP)":[34],"tools":[35],"is":[36,90,153,173],"still":[37],"difficult":[38],"researchers":[40],"who":[41],"are":[42,126,181],"not":[43],"familiar":[44],"with":[45,115],"recent":[46],"advances":[47],"NLP.":[49],"This":[50],"article":[51],"provides":[52],"comparative":[54],"evaluation":[55],"several":[57],"state-of-the-art":[58,157],"parsers,":[61],"focusing":[62],"on":[63,159],"task":[65],"extracting":[67],"protein-protein":[68],"interaction":[69],"(PPI)":[70],"from":[71,185],"papers.":[73],"We":[74],"measure":[75],"how":[76],"each":[77,186],"parser,":[78,149],"and":[79,140,144,146,150],"its":[80],"output":[81],"representation,":[82],"contributes":[83],"accuracy":[85,106,113,130,152],"improvement":[86],"when":[87,136],"parser":[89,143],"used":[91,168],"component":[94],"PPI":[97,108,165],"system.":[98],"RESULTS:":[99],"All":[100],"parsers":[102,118,180],"attained":[103],"improvements":[104],"extraction.":[109],"The":[110,128,164,178],"levels":[111],"obtained":[114,135],"these":[116],"different":[117],"vary":[119],"slightly,":[120],"while":[121],"differences":[122],"parsing":[124],"speed":[125],"larger.":[127],"best":[129],"this":[132,170],"work":[133,171],"was":[134],"we":[137],"combined":[138],"Miyao":[139],"Tsujii's":[141],"Enju":[142],"Charniak":[145],"Johnson's":[147],"reranking":[148],"better":[154],"than":[155],"results":[158],"same":[161],"data.":[162],"AVAILABILITY:":[163],"extraction":[166],"system":[167],"(AkanePPI)":[172],"available":[174,183],"online":[175,184],"at":[176],"http://www-tsujii.is.s.u-tokyo.ac.jp/downloads/downloads.cgi.":[177],"evaluated":[179],"also":[182],"developer's":[187],"site.":[188]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":18},{"year":2012,"cited_by_count":24}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
