{"id":"https://openalex.org/W2141545183","doi":"https://doi.org/10.1093/bioinformatics/btn615","title":"AmiGO: online access to ontology and annotation data","display_name":"AmiGO: online access to ontology and annotation data","publication_year":2008,"publication_date":"2008-11-25","ids":{"openalex":"https://openalex.org/W2141545183","doi":"https://doi.org/10.1093/bioinformatics/btn615","mag":"2141545183","pmid":"https://pubmed.ncbi.nlm.nih.gov/19033274"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn615","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn615","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/2/288/48982949/bioinformatics_25_2_288.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/2/288/48982949/bioinformatics_25_2_288.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089928926","display_name":"Seth Carbon","orcid":"https://orcid.org/0000-0001-8244-1536"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["GB","US"],"is_corresponding":true,"raw_author_name":"Seth Carbon","raw_affiliation_strings":["1 Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","#N# Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA"],"affiliations":[{"raw_affiliation_string":"1 Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"#N# Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016748504","display_name":"Amelia Ireland","orcid":"https://orcid.org/0000-0003-1982-9065"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Amelia Ireland","raw_affiliation_strings":["1 Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","#N# Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA"],"affiliations":[{"raw_affiliation_string":"1 Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"#N# Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002223413","display_name":"Chris Mungall","orcid":"https://orcid.org/0000-0002-6601-2165"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Christopher J. Mungall","raw_affiliation_strings":["1 Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","#N# Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA"],"affiliations":[{"raw_affiliation_string":"1 Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"#N# Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059174249","display_name":"Shengqiang Shu","orcid":"https://orcid.org/0000-0002-4336-8994"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"ShengQiang Shu","raw_affiliation_strings":["1 Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","#N# Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA"],"affiliations":[{"raw_affiliation_string":"1 Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"#N# Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113490495","display_name":"Brad Marshall","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Brad Marshall","raw_affiliation_strings":["1 Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","#N# Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA"],"affiliations":[{"raw_affiliation_string":"1 Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"#N# Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076920798","display_name":"Suzanna Lewis","orcid":"https://orcid.org/0000-0002-8343-612X"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Suzanna Lewis","raw_affiliation_strings":["1 Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","#N# Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA"],"affiliations":[{"raw_affiliation_string":"1 Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"#N# Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2GO Editorial Office, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK and 3Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":null,"display_name":"the AmiGO Hub","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"the AmiGO Hub","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"the Web Presence Working Group","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"the Web Presence Working Group","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5089928926"],"corresponding_institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I148283060","https://openalex.org/I196679689"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":25.3099,"has_fulltext":true,"cited_by_count":2048,"citation_normalized_percentile":{"value":0.9978808,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"25","issue":"2","first_page":"288","last_page":"289"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7922955751419067},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7532988786697388},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6677160263061523},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6425564289093018},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5530607104301453},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.536403238773346},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.48495176434516907},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1285630166530609},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09990930557250977},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.06867504119873047}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7922955751419067},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7532988786697388},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6677160263061523},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6425564289093018},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5530607104301453},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.536403238773346},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.48495176434516907},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1285630166530609},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09990930557250977},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.06867504119873047},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1093/bioinformatics/btn615","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn615","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/2/288/48982949/bioinformatics_25_2_288.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19033274","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19033274","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:info:ark/67531/metadc927027","is_oa":false,"landing_page_url":"https://digital.library.unt.edu/ark:/67531/metadc927027/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400792","display_name":"University of North Texas Digital Library (University of North Texas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I123534392","host_organization_name":"University of North Texas","host_organization_lineage":["https://openalex.org/I123534392"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt5v37x3rm","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/5v37x3rm","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:osti.gov:957326","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/957326","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2639003","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2639003","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:zenodo.org:8088234","is_oa":true,"landing_page_url":"https://zenodo.org/record/8088234","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"pmh:qt5v37x3rm","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/5v37x3rm","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Carbon, Seth. (2009). AmiGO: online access to ontology and annotation data. Lawrence Berkeley National Laboratory. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/5v37x3rm","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn615","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn615","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/2/288/48982949/bioinformatics_25_2_288.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.4099999964237213}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309475","display_name":"Northwestern University","ror":"https://ror.org/000e0be47"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320338292","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141545183.pdf","grobid_xml":"https://content.openalex.org/works/W2141545183.grobid-xml"},"referenced_works_count":3,"referenced_works":["https://openalex.org/W2055043387","https://openalex.org/W2103017472","https://openalex.org/W2166574880"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2171016843"],"abstract_inverted_index":{"AmiGO":[0,21,54],"is":[1,55],"a":[2],"web":[3],"application":[4],"that":[5],"allows":[6],"users":[7],"to":[8,32,48],"query,":[9],"browse":[10,49],"and":[11,14,46,52,61],"visualize":[12],"ontologies":[13,51],"related":[15],"gene":[16],"product":[17],"annotation":[18],"(association)":[19],"data.":[20],"can":[22,42],"be":[23,44],"used":[24],"online":[25],"at":[26],"the":[27,34,38,64],"Gene":[28],"Ontology":[29],"(GO)":[30],"website":[31],"access":[33],"data":[35],"provided":[36],"by":[37,63],"GO":[39,65],"Consortium;":[40],"it":[41],"also":[43],"downloaded":[45],"installed":[47],"local":[50],"annotations.":[53],"free":[56],"open":[57],"source":[58],"software":[59],"developed":[60],"maintained":[62],"Consortium.":[66]},"counts_by_year":[{"year":2026,"cited_by_count":24},{"year":2025,"cited_by_count":124},{"year":2024,"cited_by_count":191},{"year":2023,"cited_by_count":162},{"year":2022,"cited_by_count":196},{"year":2021,"cited_by_count":151},{"year":2020,"cited_by_count":162},{"year":2019,"cited_by_count":124},{"year":2018,"cited_by_count":118},{"year":2017,"cited_by_count":113},{"year":2016,"cited_by_count":107},{"year":2015,"cited_by_count":110},{"year":2014,"cited_by_count":92},{"year":2013,"cited_by_count":94},{"year":2012,"cited_by_count":93}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
