{"id":"https://openalex.org/W2110687686","doi":"https://doi.org/10.1093/bioinformatics/btn577","title":"A novel signaling pathway impact analysis","display_name":"A novel signaling pathway impact analysis","publication_year":2008,"publication_date":"2008-11-05","ids":{"openalex":"https://openalex.org/W2110687686","doi":"https://doi.org/10.1093/bioinformatics/btn577","mag":"2110687686","pmid":"https://pubmed.ncbi.nlm.nih.gov/18990722"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn577","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn577","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/1/75/48982697/bioinformatics_25_1_75.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/25/1/75/48982697/bioinformatics_25_1_75.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043404288","display_name":"Adi L. Tarca","orcid":"https://orcid.org/0000-0003-1712-7588"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Adi Laurentiu Tarca","raw_affiliation_strings":["1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006190733","display_name":"Sorin Dr\u0103ghici","orcid":"https://orcid.org/0000-0002-0786-8377"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sorin Draghici","raw_affiliation_strings":["1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083763463","display_name":"Purvesh Khatri","orcid":"https://orcid.org/0000-0002-4143-4708"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Purvesh Khatri","raw_affiliation_strings":["1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101803580","display_name":"Sonia S. Hassan","orcid":"https://orcid.org/0000-0001-7584-6252"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sonia S. Hassan","raw_affiliation_strings":["1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020501260","display_name":"Pooja Mittal","orcid":"https://orcid.org/0000-0002-2156-1419"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pooja Mittal","raw_affiliation_strings":["1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100753337","display_name":"Jung-Sun Kim","orcid":"https://orcid.org/0000-0003-2454-8065"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jung-sun Kim","raw_affiliation_strings":["1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016182502","display_name":"Chong Jai Kim","orcid":"https://orcid.org/0000-0002-2844-9446"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chong Jai Kim","raw_affiliation_strings":["1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011726013","display_name":"Juan Pedro Kusanovic","orcid":"https://orcid.org/0000-0003-0640-2070"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Juan Pedro Kusanovic","raw_affiliation_strings":["1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067511554","display_name":"Roberto Romero","orcid":"https://orcid.org/0000-0002-4448-5121"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roberto Romero","raw_affiliation_strings":["1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202 and 2Perinatology Research Branch-NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA","institution_ids":["https://openalex.org/I185443292"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5043404288"],"corresponding_institution_ids":["https://openalex.org/I185443292"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":8.7132,"has_fulltext":true,"cited_by_count":1079,"citation_normalized_percentile":{"value":0.98463553,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"25","issue":"1","first_page":"75","last_page":"82"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9294999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pathway-analysis","display_name":"Pathway analysis","score":0.8497492074966431},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6349855065345764},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5371765494346619},{"id":"https://openalex.org/keywords/biological-pathway","display_name":"Biological pathway","score":0.5303350687026978},{"id":"https://openalex.org/keywords/fold-change","display_name":"Fold change","score":0.48698362708091736},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4735526144504547},{"id":"https://openalex.org/keywords/signal-transduction","display_name":"Signal transduction","score":0.451680064201355},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4194740056991577},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3643379509449005},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.31624144315719604},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2825314998626709}],"concepts":[{"id":"https://openalex.org/C2779230013","wikidata":"https://www.wikidata.org/wiki/Q25303877","display_name":"Pathway analysis","level":4,"score":0.8497492074966431},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6349855065345764},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5371765494346619},{"id":"https://openalex.org/C9927688","wikidata":"https://www.wikidata.org/wiki/Q4915012","display_name":"Biological pathway","level":4,"score":0.5303350687026978},{"id":"https://openalex.org/C2779018089","wikidata":"https://www.wikidata.org/wiki/Q17014303","display_name":"Fold change","level":4,"score":0.48698362708091736},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4735526144504547},{"id":"https://openalex.org/C62478195","wikidata":"https://www.wikidata.org/wiki/Q828130","display_name":"Signal transduction","level":2,"score":0.451680064201355},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4194740056991577},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3643379509449005},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.31624144315719604},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2825314998626709},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005189","descriptor_name":"False Positive Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005189","descriptor_name":"False Positive Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005189","descriptor_name":"False Positive Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007743","descriptor_name":"Labor, Obstetric","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007743","descriptor_name":"Labor, Obstetric","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007743","descriptor_name":"Labor, Obstetric","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011247","descriptor_name":"Pregnancy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011247","descriptor_name":"Pregnancy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011247","descriptor_name":"Pregnancy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btn577","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn577","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/1/75/48982697/bioinformatics_25_1_75.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18990722","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18990722","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.977.8538","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.977.8538","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2008/11/05/bioinformatics.btn577.full.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2732297","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2732297","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn577","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn577","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/25/1/75/48982697/bioinformatics_25_1_75.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2425540664","display_name":null,"funder_award_id":"P30 CA022453","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4700852728","display_name":null,"funder_award_id":"R01 NS","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4834028135","display_name":"SoD: Design of Incremental Change","funder_award_id":"0438970","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6154735872","display_name":"Novel Tools for the Vertical Analysis of Genomic Data","funder_award_id":"0234806","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G65507591","display_name":null,"funder_award_id":"CA022453","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7070816503","display_name":null,"funder_award_id":"P30 CA022453","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306078","display_name":"U.S. Department of Defense","ror":"https://ror.org/0447fe631"},{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337364","display_name":"National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"},{"id":"https://openalex.org/F4320337611","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2110687686.pdf","grobid_xml":"https://content.openalex.org/works/W2110687686.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1535641839","https://openalex.org/W1546952499","https://openalex.org/W1596515083","https://openalex.org/W1973429877","https://openalex.org/W1998902445","https://openalex.org/W1999600775","https://openalex.org/W2007012192","https://openalex.org/W2008272988","https://openalex.org/W2057709771","https://openalex.org/W2062159267","https://openalex.org/W2088588640","https://openalex.org/W2091362837","https://openalex.org/W2104810358","https://openalex.org/W2118069309","https://openalex.org/W2123106337","https://openalex.org/W2130410032","https://openalex.org/W2135230352","https://openalex.org/W2142424292","https://openalex.org/W2146995322","https://openalex.org/W2147714160","https://openalex.org/W2150414518","https://openalex.org/W2150982004","https://openalex.org/W2154458783","https://openalex.org/W2154972152","https://openalex.org/W2159482845","https://openalex.org/W2167119716","https://openalex.org/W2170989872"],"related_works":["https://openalex.org/W4226066106","https://openalex.org/W2060814806","https://openalex.org/W2981835341","https://openalex.org/W4311718423","https://openalex.org/W1971040006","https://openalex.org/W2737250971","https://openalex.org/W2790180944","https://openalex.org/W2792179313","https://openalex.org/W4293149715","https://openalex.org/W2165379648"],"abstract_inverted_index":{"SPIA":[0],"was":[1],"implemented":[2],"as":[3],"an":[4],"R":[5],"package":[6],"available":[7],"at":[8],"http://vortex.cs.wayne.edu/ontoexpress/":[9]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":45},{"year":2024,"cited_by_count":63},{"year":2023,"cited_by_count":67},{"year":2022,"cited_by_count":90},{"year":2021,"cited_by_count":103},{"year":2020,"cited_by_count":94},{"year":2019,"cited_by_count":74},{"year":2018,"cited_by_count":88},{"year":2017,"cited_by_count":70},{"year":2016,"cited_by_count":87},{"year":2015,"cited_by_count":80},{"year":2014,"cited_by_count":66},{"year":2013,"cited_by_count":45},{"year":2012,"cited_by_count":35}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
