{"id":"https://openalex.org/W2147426864","doi":"https://doi.org/10.1093/bioinformatics/btn553","title":"Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models","display_name":"Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models","publication_year":2008,"publication_date":"2008-10-30","ids":{"openalex":"https://openalex.org/W2147426864","doi":"https://doi.org/10.1093/bioinformatics/btn553","mag":"2147426864","pmid":"https://pubmed.ncbi.nlm.nih.gov/18974169"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn553","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/24/2894/49056067/bioinformatics_24_24_2894.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/24/2894/49056067/bioinformatics_24_24_2894.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060432668","display_name":"Simon Rogers","orcid":"https://orcid.org/0000-0003-3578-4477"},"institutions":[{"id":"https://openalex.org/I2801280572","display_name":"Environmental Molecular Sciences Laboratory","ror":"https://ror.org/04rc0xn13","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I2801280572","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["GB","US"],"is_corresponding":true,"raw_author_name":"Simon Rogers","raw_affiliation_strings":["1 Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, 2Beatson Institute for Cancer Research, Signalling and Proteomics Laboratory, Garscube Estate, Glasgow, G61 1BD, 3Institute of Biomedical and Life Sciences, Sir Henry Wellcome Functional Genomics Facillity, University of Glasgow, G12 8QQ, UK, 4Systems Biology Program, Pacific Northwest National Laboratory, Richland, WA 99352 and 5Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, 2Beatson Institute for Cancer Research, Signalling and Proteomics Laboratory, Garscube Estate, Glasgow, G61 1BD, 3Institute of Biomedical and Life Sciences, Sir Henry Wellcome Functional Genomics Facillity, University of Glasgow, G12 8QQ, UK, 4Systems Biology Program, Pacific Northwest National Laboratory, Richland, WA 99352 and 5Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA","institution_ids":["https://openalex.org/I2801280572","https://openalex.org/I142606810","https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045384249","display_name":"Mark Girolami","orcid":"https://orcid.org/0000-0003-3008-253X"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I2801280572","display_name":"Environmental Molecular Sciences Laboratory","ror":"https://ror.org/04rc0xn13","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I2801280572","https://openalex.org/I39565521"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Mark Girolami","raw_affiliation_strings":["1 Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, 2Beatson Institute for Cancer Research, Signalling and Proteomics Laboratory, Garscube Estate, Glasgow, G61 1BD, 3Institute of Biomedical and Life Sciences, Sir Henry Wellcome Functional Genomics Facillity, University of Glasgow, G12 8QQ, UK, 4Systems Biology Program, Pacific Northwest National Laboratory, Richland, WA 99352 and 5Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, 2Beatson Institute for Cancer Research, Signalling and Proteomics Laboratory, Garscube Estate, Glasgow, G61 1BD, 3Institute of Biomedical and Life Sciences, Sir Henry Wellcome Functional Genomics Facillity, University of Glasgow, G12 8QQ, UK, 4Systems Biology Program, Pacific Northwest National Laboratory, Richland, WA 99352 and 5Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA","institution_ids":["https://openalex.org/I2801280572","https://openalex.org/I142606810","https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036674933","display_name":"Walter K\u00f6lch","orcid":"https://orcid.org/0000-0001-5777-5016"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]},{"id":"https://openalex.org/I2801280572","display_name":"Environmental Molecular Sciences Laboratory","ror":"https://ror.org/04rc0xn13","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I2801280572","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Walter Kolch","raw_affiliation_strings":["1 Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, 2Beatson Institute for Cancer Research, Signalling and Proteomics Laboratory, Garscube Estate, Glasgow, G61 1BD, 3Institute of Biomedical and Life Sciences, Sir Henry Wellcome Functional Genomics Facillity, University of Glasgow, G12 8QQ, UK, 4Systems Biology Program, Pacific Northwest National Laboratory, Richland, WA 99352 and 5Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, 2Beatson Institute for Cancer Research, Signalling and Proteomics Laboratory, Garscube Estate, Glasgow, G61 1BD, 3Institute of Biomedical and Life Sciences, Sir Henry Wellcome Functional Genomics Facillity, University of Glasgow, G12 8QQ, UK, 4Systems Biology Program, Pacific Northwest National Laboratory, Richland, WA 99352 and 5Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA","institution_ids":["https://openalex.org/I2801280572","https://openalex.org/I142606810","https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053476989","display_name":"Katrina M. Waters","orcid":"https://orcid.org/0000-0003-4696-5396"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]},{"id":"https://openalex.org/I2801280572","display_name":"Environmental Molecular Sciences Laboratory","ror":"https://ror.org/04rc0xn13","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I2801280572","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Katrina M. Waters","raw_affiliation_strings":["1 Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, 2Beatson Institute for Cancer Research, Signalling and Proteomics Laboratory, Garscube Estate, Glasgow, G61 1BD, 3Institute of Biomedical and Life Sciences, Sir Henry Wellcome Functional Genomics Facillity, University of Glasgow, G12 8QQ, UK, 4Systems Biology Program, Pacific Northwest National Laboratory, Richland, WA 99352 and 5Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, 2Beatson Institute for Cancer Research, Signalling and Proteomics Laboratory, Garscube Estate, Glasgow, G61 1BD, 3Institute of Biomedical and Life Sciences, Sir Henry Wellcome Functional Genomics Facillity, University of Glasgow, G12 8QQ, UK, 4Systems Biology Program, Pacific Northwest National Laboratory, Richland, WA 99352 and 5Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA","institution_ids":["https://openalex.org/I2801280572","https://openalex.org/I142606810","https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043928018","display_name":"Tao Liu","orcid":"https://orcid.org/0000-0001-9529-6550"},"institutions":[{"id":"https://openalex.org/I2801280572","display_name":"Environmental Molecular Sciences Laboratory","ror":"https://ror.org/04rc0xn13","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I2801280572","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Tao Liu","raw_affiliation_strings":["1 Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, 2Beatson Institute for Cancer Research, Signalling and Proteomics Laboratory, Garscube Estate, Glasgow, G61 1BD, 3Institute of Biomedical and Life Sciences, Sir Henry Wellcome Functional Genomics Facillity, University of Glasgow, G12 8QQ, UK, 4Systems Biology Program, Pacific Northwest National Laboratory, Richland, WA 99352 and 5Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, 2Beatson Institute for Cancer Research, Signalling and Proteomics Laboratory, Garscube Estate, Glasgow, G61 1BD, 3Institute of Biomedical and Life Sciences, Sir Henry Wellcome Functional Genomics Facillity, University of Glasgow, G12 8QQ, UK, 4Systems Biology Program, Pacific Northwest National Laboratory, Richland, WA 99352 and 5Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA","institution_ids":["https://openalex.org/I2801280572","https://openalex.org/I142606810","https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110543549","display_name":"Brian D. Thrall","orcid":null},"institutions":[{"id":"https://openalex.org/I2801280572","display_name":"Environmental Molecular Sciences Laboratory","ror":"https://ror.org/04rc0xn13","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I2801280572","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Brian Thrall","raw_affiliation_strings":["1 Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, 2Beatson Institute for Cancer Research, Signalling and Proteomics Laboratory, Garscube Estate, Glasgow, G61 1BD, 3Institute of Biomedical and Life Sciences, Sir Henry Wellcome Functional Genomics Facillity, University of Glasgow, G12 8QQ, UK, 4Systems Biology Program, Pacific Northwest National Laboratory, Richland, WA 99352 and 5Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, 2Beatson Institute for Cancer Research, Signalling and Proteomics Laboratory, Garscube Estate, Glasgow, G61 1BD, 3Institute of Biomedical and Life Sciences, Sir Henry Wellcome Functional Genomics Facillity, University of Glasgow, G12 8QQ, UK, 4Systems Biology Program, Pacific Northwest National Laboratory, Richland, WA 99352 and 5Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA","institution_ids":["https://openalex.org/I2801280572","https://openalex.org/I142606810","https://openalex.org/I7882870"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032610249","display_name":"H Wiley","orcid":"https://orcid.org/0000-0003-0232-6867"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I2801280572","display_name":"Environmental Molecular Sciences Laboratory","ror":"https://ror.org/04rc0xn13","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I2801280572","https://openalex.org/I39565521"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"H. Steven Wiley","raw_affiliation_strings":["1 Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, 2Beatson Institute for Cancer Research, Signalling and Proteomics Laboratory, Garscube Estate, Glasgow, G61 1BD, 3Institute of Biomedical and Life Sciences, Sir Henry Wellcome Functional Genomics Facillity, University of Glasgow, G12 8QQ, UK, 4Systems Biology Program, Pacific Northwest National Laboratory, Richland, WA 99352 and 5Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, 2Beatson Institute for Cancer Research, Signalling and Proteomics Laboratory, Garscube Estate, Glasgow, G61 1BD, 3Institute of Biomedical and Life Sciences, Sir Henry Wellcome Functional Genomics Facillity, University of Glasgow, G12 8QQ, UK, 4Systems Biology Program, Pacific Northwest National Laboratory, Richland, WA 99352 and 5Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA","institution_ids":["https://openalex.org/I2801280572","https://openalex.org/I142606810","https://openalex.org/I7882870"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5060432668"],"corresponding_institution_ids":["https://openalex.org/I142606810","https://openalex.org/I2801280572","https://openalex.org/I7882870"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.5641,"has_fulltext":false,"cited_by_count":144,"citation_normalized_percentile":{"value":0.9549244,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"24","issue":"24","first_page":"2894","last_page":"2900"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.8036928176879883},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.7699999809265137},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6344853639602661},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.5451197028160095},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5112144947052002},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4725113809108734},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.39455538988113403},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.35872066020965576},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.35454896092414856},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.30472317337989807},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2372553050518036},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.07826906442642212}],"concepts":[{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.8036928176879883},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.7699999809265137},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6344853639602661},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.5451197028160095},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5112144947052002},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4725113809108734},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.39455538988113403},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.35872066020965576},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.35454896092414856},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.30472317337989807},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2372553050518036},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.07826906442642212}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btn553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn553","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/24/2894/49056067/bioinformatics_24_24_2894.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18974169","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18974169","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:eprints.gla.ac.uk:5373","is_oa":false,"landing_page_url":"http://eprints.gla.ac.uk/5373/","pdf_url":null,"source":{"id":"https://openalex.org/S4210235606","display_name":"ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)","issn_l":"2622-8912","issn":["2622-8912","2622-8920"],"is_oa":false,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Articles"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1339727","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/1339727/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   BIOINFORMATICS , 24  (24)   pp. 2894-2900.   (2008)      ","raw_type":"Article"},{"id":"pmh:oai:generic.eprints.org:1185244","is_oa":false,"landing_page_url":"http://publications.eng.cam.ac.uk/1185244/","pdf_url":null,"source":{"id":"https://openalex.org/S4406922847","display_name":"Cambridge University Engineering Department Publications Database","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4141638","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4141638","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn553","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/24/2894/49056067/bioinformatics_24_24_2894.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6009955385","display_name":null,"funder_award_id":"EP/E052029/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2147426864.pdf","grobid_xml":"https://content.openalex.org/works/W2147426864.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W170352328","https://openalex.org/W1593486402","https://openalex.org/W1857766814","https://openalex.org/W1966794959","https://openalex.org/W1969651353","https://openalex.org/W1995127079","https://openalex.org/W1996326203","https://openalex.org/W1999032458","https://openalex.org/W1999062346","https://openalex.org/W2001552323","https://openalex.org/W2004022680","https://openalex.org/W2014484295","https://openalex.org/W2045234988","https://openalex.org/W2049633694","https://openalex.org/W2053023842","https://openalex.org/W2082085770","https://openalex.org/W2092346055","https://openalex.org/W2104901100","https://openalex.org/W2109623522","https://openalex.org/W2113702155","https://openalex.org/W2117333689","https://openalex.org/W2119253710","https://openalex.org/W2120413242","https://openalex.org/W2125323026","https://openalex.org/W2132215799","https://openalex.org/W2137683543","https://openalex.org/W2140736261","https://openalex.org/W2147246240","https://openalex.org/W2148342439","https://openalex.org/W2150473224","https://openalex.org/W2150926065","https://openalex.org/W2159578516","https://openalex.org/W2165905264","https://openalex.org/W2168846334","https://openalex.org/W2185298364","https://openalex.org/W2612972698","https://openalex.org/W4211017114","https://openalex.org/W4285719527","https://openalex.org/W6635743399","https://openalex.org/W6651535730","https://openalex.org/W6679852311"],"related_works":["https://openalex.org/W4321437894","https://openalex.org/W2806166617","https://openalex.org/W2030680494","https://openalex.org/W1982829397","https://openalex.org/W1881709772","https://openalex.org/W2106414650","https://openalex.org/W2347437365","https://openalex.org/W1999412725","https://openalex.org/W2124137418","https://openalex.org/W2939973050"],"abstract_inverted_index":{"Matlab":[0],"code":[1],"is":[2],"available":[3],"from":[4],"the":[5],"authors":[6],"on":[7],"request.":[8]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":22},{"year":2012,"cited_by_count":20}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}