{"id":"https://openalex.org/W2103522843","doi":"https://doi.org/10.1093/bioinformatics/btn542","title":"CARPET: a web-based package for the analysis of ChIP-chip and expression tiling data","display_name":"CARPET: a web-based package for the analysis of ChIP-chip and expression tiling data","publication_year":2008,"publication_date":"2008-10-21","ids":{"openalex":"https://openalex.org/W2103522843","doi":"https://doi.org/10.1093/bioinformatics/btn542","mag":"2103522843","pmid":"https://pubmed.ncbi.nlm.nih.gov/18945685"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn542","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn542","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/24/2918/49055843/bioinformatics_24_24_2918.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/24/2918/49055843/bioinformatics_24_24_2918.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021943746","display_name":"Matteo Cesaroni","orcid":"https://orcid.org/0000-0002-6377-8157"},"institutions":[{"id":"https://openalex.org/I4210114103","display_name":"IFOM","ror":"https://ror.org/02hcsa680","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210114103"]},{"id":"https://openalex.org/I6141010","display_name":"European Institute of Oncology","ror":"https://ror.org/02vr0ne26","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126","https://openalex.org/I6141010"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Matteo Cesaroni","raw_affiliation_strings":["1 Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, 2Cogentech, Consortium for Genomic Technologies, Via Adamello 16, 20139 Milano and 3IFOM, FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, 2Cogentech, Consortium for Genomic Technologies, Via Adamello 16, 20139 Milano and 3IFOM, FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milano, Italy","institution_ids":["https://openalex.org/I4210114103","https://openalex.org/I6141010"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044078690","display_name":"Davide Cittaro","orcid":"https://orcid.org/0000-0003-0384-3700"},"institutions":[{"id":"https://openalex.org/I4210114103","display_name":"IFOM","ror":"https://ror.org/02hcsa680","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210114103"]},{"id":"https://openalex.org/I6141010","display_name":"European Institute of Oncology","ror":"https://ror.org/02vr0ne26","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126","https://openalex.org/I6141010"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Davide Cittaro","raw_affiliation_strings":["1 Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, 2Cogentech, Consortium for Genomic Technologies, Via Adamello 16, 20139 Milano and 3IFOM, FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, 2Cogentech, Consortium for Genomic Technologies, Via Adamello 16, 20139 Milano and 3IFOM, FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milano, Italy","institution_ids":["https://openalex.org/I4210114103","https://openalex.org/I6141010"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019761344","display_name":"Alessandro Brozzi","orcid":"https://orcid.org/0000-0002-4746-5900"},"institutions":[{"id":"https://openalex.org/I4210114103","display_name":"IFOM","ror":"https://ror.org/02hcsa680","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210114103"]},{"id":"https://openalex.org/I6141010","display_name":"European Institute of Oncology","ror":"https://ror.org/02vr0ne26","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126","https://openalex.org/I6141010"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessandro Brozzi","raw_affiliation_strings":["1 Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, 2Cogentech, Consortium for Genomic Technologies, Via Adamello 16, 20139 Milano and 3IFOM, FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, 2Cogentech, Consortium for Genomic Technologies, Via Adamello 16, 20139 Milano and 3IFOM, FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milano, Italy","institution_ids":["https://openalex.org/I4210114103","https://openalex.org/I6141010"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057101865","display_name":"Pier Giuseppe Pelicci","orcid":"https://orcid.org/0000-0002-5076-2316"},"institutions":[{"id":"https://openalex.org/I4210114103","display_name":"IFOM","ror":"https://ror.org/02hcsa680","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210114103"]},{"id":"https://openalex.org/I6141010","display_name":"European Institute of Oncology","ror":"https://ror.org/02vr0ne26","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126","https://openalex.org/I6141010"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Pier Giuseppe Pelicci","raw_affiliation_strings":["1 Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, 2Cogentech, Consortium for Genomic Technologies, Via Adamello 16, 20139 Milano and 3IFOM, FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, 2Cogentech, Consortium for Genomic Technologies, Via Adamello 16, 20139 Milano and 3IFOM, FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milano, Italy","institution_ids":["https://openalex.org/I4210114103","https://openalex.org/I6141010"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023655228","display_name":"Lucilla Luzi","orcid":"https://orcid.org/0000-0002-8746-4179"},"institutions":[{"id":"https://openalex.org/I4210114103","display_name":"IFOM","ror":"https://ror.org/02hcsa680","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210114103"]},{"id":"https://openalex.org/I6141010","display_name":"European Institute of Oncology","ror":"https://ror.org/02vr0ne26","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126","https://openalex.org/I6141010"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Lucilla Luzi","raw_affiliation_strings":["1 Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, 2Cogentech, Consortium for Genomic Technologies, Via Adamello 16, 20139 Milano and 3IFOM, FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, 2Cogentech, Consortium for Genomic Technologies, Via Adamello 16, 20139 Milano and 3IFOM, FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milano, Italy","institution_ids":["https://openalex.org/I4210114103","https://openalex.org/I6141010"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5021943746","https://openalex.org/A5023655228"],"corresponding_institution_ids":["https://openalex.org/I4210114103","https://openalex.org/I6141010"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.9448,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.85748282,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"24","issue":"24","first_page":"2918","last_page":"2920"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.6263999938964844,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.6263999938964844,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.0982000008225441,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.08259999752044678,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chip","display_name":"Chip","score":0.7722276449203491},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6462134122848511},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6103293895721436},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.495700478553772},{"id":"https://openalex.org/keywords/tiling-array","display_name":"Tiling array","score":0.4760570228099823},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.4412175416946411},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.42017924785614014},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.35209953784942627},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.344961941242218},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.33470964431762695},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.24518316984176636},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.1878816783428192},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.17464619874954224},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13185465335845947},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11275148391723633},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.09411093592643738},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.09046375751495361},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.04874899983406067}],"concepts":[{"id":"https://openalex.org/C165005293","wikidata":"https://www.wikidata.org/wiki/Q1074500","display_name":"Chip","level":2,"score":0.7722276449203491},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6462134122848511},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6103293895721436},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.495700478553772},{"id":"https://openalex.org/C119401833","wikidata":"https://www.wikidata.org/wiki/Q7802158","display_name":"Tiling array","level":5,"score":0.4760570228099823},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.4412175416946411},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.42017924785614014},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.35209953784942627},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.344961941242218},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.33470964431762695},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.24518316984176636},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.1878816783428192},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.17464619874954224},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13185465335845947},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11275148391723633},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.09411093592643738},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09046375751495361},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.04874899983406067},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btn542","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn542","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/24/2918/49055843/bioinformatics_24_24_2918.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18945685","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18945685","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:zenodo.org:45732","is_oa":true,"landing_page_url":"https://www.openaccessrepository.it/record/45732","pdf_url":null,"source":{"id":"https://openalex.org/S4306402478","display_name":"INFM-OAR (INFN Catania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210116497","host_organization_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Catania","host_organization_lineage":["https://openalex.org/I4210116497"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn542","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn542","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/24/2918/49055843/bioinformatics_24_24_2918.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103522843.pdf","grobid_xml":"https://content.openalex.org/works/W2103522843.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1577222190","https://openalex.org/W2020659583","https://openalex.org/W2066310505","https://openalex.org/W2110065044","https://openalex.org/W2113565103","https://openalex.org/W2124866579","https://openalex.org/W2133938268","https://openalex.org/W2157561289","https://openalex.org/W2171407623"],"related_works":["https://openalex.org/W2141222206","https://openalex.org/W4389426664","https://openalex.org/W2566205467","https://openalex.org/W3012616639","https://openalex.org/W3126000805","https://openalex.org/W3198565742","https://openalex.org/W2010064959","https://openalex.org/W2157390150","https://openalex.org/W2119742499","https://openalex.org/W1985266044"],"abstract_inverted_index":{"SUMMARY:":[0],"CARPET":[1,41],"(collection":[2],"of":[3,13,28,55,60,67,81],"automated":[4],"routine":[5],"programs":[6],"for":[7,25,35],"easy":[8,51],"tiling)":[9],"is":[10],"a":[11,92],"set":[12],"Perl,":[14],"Python":[15],"and":[16,30,37,53,83,108,116],"R":[17],"scripts,":[18],"integrated":[19],"on":[20],"the":[21,26,61,79,96],"Galaxy2":[22],"web-based":[23],"platform,":[24],"analysis":[27],"ChIP-chip":[29,57,82],"expression":[31,71,84],"tiling":[32,72],"data,":[33],"both":[34],"standard":[36],"custom":[38,102],"chip":[39],"designs.":[40],"allows":[42,78],"rapid":[43],"experimental":[44],"data":[45,110],"entry,":[46],"simple":[47],"quality":[48],"control,":[49],"normalization,":[50],"identification":[52],"annotation":[54],"enriched":[56],"regions,":[58],"detection":[59],"absolute":[62],"or":[63],"relative":[64],"transcriptional":[65],"status":[66],"genes":[68],"assessed":[69],"by":[70],"experiments":[73],"and,":[74],"more":[75],"importantly,":[76],"it":[77],"integration":[80],"data.":[85],"Results":[86],"can":[87,111],"be":[88,112],"visualized":[89],"instantly":[90],"in":[91],"genomic":[93],"context":[94],"within":[95,114],"UCSC":[97],"genome":[98],"browser":[99],"as":[100],"graph-based":[101],"tracks":[103],"through":[104],"Galaxy2.":[105],"All":[106],"generated":[107],"uploaded":[109],"stored":[113],"sessions":[115],"are":[117],"easily":[118],"shared":[119],"with":[120],"other":[121],"users.":[122],"AVAILABILITY:":[123],"http://bio.ifom-ieo-campus.it/galaxy":[124]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
