{"id":"https://openalex.org/W2911981258","doi":"https://doi.org/10.1093/bioinformatics/btn532","title":"Addendum. Cytoprophet: a<i>Cytoscape</i>plug-in for protein and domain interaction networks inference","display_name":"Addendum. Cytoprophet: a<i>Cytoscape</i>plug-in for protein and domain interaction networks inference","publication_year":2008,"publication_date":"2008-10-09","ids":{"openalex":"https://openalex.org/W2911981258","doi":"https://doi.org/10.1093/bioinformatics/btn532","mag":"2911981258"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn532","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn532","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/23/2805/49055909/bioinformatics_24_23_2805.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/23/2805/49055909/bioinformatics_24_23_2805.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018611865","display_name":"Faruck Morcos","orcid":"https://orcid.org/0000-0001-6208-1561"},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Faruck Morcos","raw_affiliation_strings":["1 Department of Computer Science and Engineering and 2Department of Electrical Engineering, University of Notre Dame, Notre Dame, IN 46556, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering and 2Department of Electrical Engineering, University of Notre Dame, Notre Dame, IN 46556, USA","institution_ids":["https://openalex.org/I107639228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062238263","display_name":"Charles Lamanna","orcid":null},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Lamanna","raw_affiliation_strings":["1 Department of Computer Science and Engineering and 2Department of Electrical Engineering, University of Notre Dame, Notre Dame, IN 46556, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering and 2Department of Electrical Engineering, University of Notre Dame, Notre Dame, IN 46556, USA","institution_ids":["https://openalex.org/I107639228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073090576","display_name":"Marcin Sikora","orcid":"https://orcid.org/0000-0003-2022-4434"},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcin Sikora","raw_affiliation_strings":["1 Department of Computer Science and Engineering and 2Department of Electrical Engineering, University of Notre Dame, Notre Dame, IN 46556, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering and 2Department of Electrical Engineering, University of Notre Dame, Notre Dame, IN 46556, USA","institution_ids":["https://openalex.org/I107639228"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039906501","display_name":"Jes\u00fas A. Izaguirre","orcid":"https://orcid.org/0000-0002-4687-4884"},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jes\u00fas Izaguirre","raw_affiliation_strings":["1 Department of Computer Science and Engineering and 2Department of Electrical Engineering, University of Notre Dame, Notre Dame, IN 46556, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering and 2Department of Electrical Engineering, University of Notre Dame, Notre Dame, IN 46556, USA","institution_ids":["https://openalex.org/I107639228"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5018611865"],"corresponding_institution_ids":["https://openalex.org/I107639228"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.30075628,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"24","issue":"23","first_page":"2805","last_page":"2805"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.975600004196167,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9726999998092651,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/addendum","display_name":"Addendum","score":0.960425078868866},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7142348289489746},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.6394845843315125},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6130542159080505},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5877469182014465},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3576308488845825},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33160510659217834},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27794432640075684},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.21002346277236938},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1613113284111023},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1319577395915985}],"concepts":[{"id":"https://openalex.org/C2778945725","wikidata":"https://www.wikidata.org/wiki/Q352858","display_name":"Addendum","level":2,"score":0.960425078868866},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7142348289489746},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.6394845843315125},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6130542159080505},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5877469182014465},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3576308488845825},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33160510659217834},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27794432640075684},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.21002346277236938},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1613113284111023},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1319577395915985},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1093/bioinformatics/btn532","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn532","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/23/2805/49055909/bioinformatics_24_23_2805.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn532","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn532","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/23/2805/49055909/bioinformatics_24_23_2805.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":1,"referenced_works":["https://openalex.org/W2113353492"],"related_works":["https://openalex.org/W1563201300","https://openalex.org/W37587837","https://openalex.org/W2179537243","https://openalex.org/W605190670","https://openalex.org/W2756545775","https://openalex.org/W2324883613","https://openalex.org/W169128018","https://openalex.org/W4256064690","https://openalex.org/W2088559591","https://openalex.org/W2094496190"],"abstract_inverted_index":{"Abstract":[0],"An":[1],"additional":[2],"reference":[3,23],"is":[4],"needed":[5],"in":[6],"the":[7],"article":[8],"Cytoprophet:":[9],"a":[10,25],"Cytoscape":[11],"plug-in":[12],"for":[13],"protein":[14],"and":[15],"domain":[16],"interaction":[17],"networks":[18],"inference.":[19],"We":[20],"include":[21],"this":[22],"as":[24],"matter":[26],"of":[27],"addendum.":[28],"Contact:":[29],"cytoprophet@cse.nd.edu":[30]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
