{"id":"https://openalex.org/W2117467648","doi":"https://doi.org/10.1093/bioinformatics/btn523","title":"QGene 4.0, an extensible Java QTL-analysis platform","display_name":"QGene 4.0, an extensible Java QTL-analysis platform","publication_year":2008,"publication_date":"2008-10-21","ids":{"openalex":"https://openalex.org/W2117467648","doi":"https://doi.org/10.1093/bioinformatics/btn523","mag":"2117467648","pmid":"https://pubmed.ncbi.nlm.nih.gov/18940826"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn523","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn523","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/23/2788/49055472/bioinformatics_24_23_2788.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/23/2788/49055472/bioinformatics_24_23_2788.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051097194","display_name":"Roby Joehanes","orcid":"https://orcid.org/0000-0001-5549-9054"},"institutions":[{"id":"https://openalex.org/I189590672","display_name":"Kansas State University","ror":"https://ror.org/05p1j8758","country_code":"US","type":"education","lineage":["https://openalex.org/I189590672"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Roby Joehanes","raw_affiliation_strings":["Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA","Department of Plant Pathology , Kansas State University , Manhattan, KS, 66506, USA"],"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA","institution_ids":["https://openalex.org/I189590672"]},{"raw_affiliation_string":"Department of Plant Pathology , Kansas State University , Manhattan, KS, 66506, USA","institution_ids":["https://openalex.org/I189590672"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110238103","display_name":"James C. Nelson","orcid":null},"institutions":[{"id":"https://openalex.org/I189590672","display_name":"Kansas State University","ror":"https://ror.org/05p1j8758","country_code":"US","type":"education","lineage":["https://openalex.org/I189590672"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James C. Nelson","raw_affiliation_strings":["Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA","Department of Plant Pathology , Kansas State University , Manhattan, KS, 66506, USA"],"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA","institution_ids":["https://openalex.org/I189590672"]},{"raw_affiliation_string":"Department of Plant Pathology , Kansas State University , Manhattan, KS, 66506, USA","institution_ids":["https://openalex.org/I189590672"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5051097194"],"corresponding_institution_ids":["https://openalex.org/I189590672"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":7.0662,"has_fulltext":false,"cited_by_count":391,"citation_normalized_percentile":{"value":0.97246996,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"24","issue":"23","first_page":"2788","last_page":"2789"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11229","display_name":"Genetics and Plant Breeding","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/quantitative-trait-locus","display_name":"Quantitative trait locus","score":0.6982830166816711},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6965478658676147},{"id":"https://openalex.org/keywords/selfing","display_name":"Selfing","score":0.696360170841217},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5704178214073181},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.4942071735858917},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.46668538451194763},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.45802363753318787},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4499441683292389},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2934960722923279}],"concepts":[{"id":"https://openalex.org/C81941488","wikidata":"https://www.wikidata.org/wiki/Q853421","display_name":"Quantitative trait locus","level":3,"score":0.6982830166816711},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6965478658676147},{"id":"https://openalex.org/C2780926781","wikidata":"https://www.wikidata.org/wiki/Q24344273","display_name":"Selfing","level":3,"score":0.696360170841217},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5704178214073181},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.4942071735858917},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.46668538451194763},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.45802363753318787},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4499441683292389},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2934960722923279},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003433","descriptor_name":"Crosses, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003433","descriptor_name":"Crosses, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003433","descriptor_name":"Crosses, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007178","descriptor_name":"Inbreeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007178","descriptor_name":"Inbreeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007178","descriptor_name":"Inbreeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btn523","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn523","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/23/2788/49055472/bioinformatics_24_23_2788.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18940826","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18940826","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn523","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn523","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/23/2788/49055472/bioinformatics_24_23_2788.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2117467648.pdf","grobid_xml":"https://content.openalex.org/works/W2117467648.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1541473379","https://openalex.org/W1552540651","https://openalex.org/W1556029148","https://openalex.org/W1768823846","https://openalex.org/W1835754911","https://openalex.org/W1855326968","https://openalex.org/W1864995317","https://openalex.org/W1890187709","https://openalex.org/W1914121885","https://openalex.org/W1936555975","https://openalex.org/W1963383323","https://openalex.org/W2012555257","https://openalex.org/W2030790365","https://openalex.org/W2034608799","https://openalex.org/W2042259310","https://openalex.org/W2042752027","https://openalex.org/W2108908271","https://openalex.org/W2109085886","https://openalex.org/W2110899053","https://openalex.org/W2116053845","https://openalex.org/W2120928669","https://openalex.org/W2125860227","https://openalex.org/W2149945426","https://openalex.org/W2159675211","https://openalex.org/W2163285329","https://openalex.org/W2594293702","https://openalex.org/W2612775479","https://openalex.org/W6633184995"],"related_works":["https://openalex.org/W2072653377","https://openalex.org/W2329202974","https://openalex.org/W2316156549","https://openalex.org/W2331444926","https://openalex.org/W1996599515","https://openalex.org/W4200449562","https://openalex.org/W4241427669","https://openalex.org/W2317740470","https://openalex.org/W4324387005","https://openalex.org/W2924735795"],"abstract_inverted_index":{"Software":[0],"and":[1],"documentation":[2],"are":[3],"available":[4,10],"at":[5],"http://coding.plantpath.ksu.edu/qgene.":[6],"Source":[7],"code":[8],"is":[9],"on":[11],"request.":[12]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":37},{"year":2023,"cited_by_count":25},{"year":2022,"cited_by_count":25},{"year":2021,"cited_by_count":19},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":26},{"year":2018,"cited_by_count":18},{"year":2017,"cited_by_count":23},{"year":2016,"cited_by_count":26},{"year":2015,"cited_by_count":27},{"year":2014,"cited_by_count":39},{"year":2013,"cited_by_count":25},{"year":2012,"cited_by_count":23}],"updated_date":"2026-04-01T17:29:45.350535","created_date":"2025-10-10T00:00:00"}
