{"id":"https://openalex.org/W2125706743","doi":"https://doi.org/10.1093/bioinformatics/btn509","title":"Smarter clustering methods for SNP genotype calling","display_name":"Smarter clustering methods for SNP genotype calling","publication_year":2008,"publication_date":"2008-09-29","ids":{"openalex":"https://openalex.org/W2125706743","doi":"https://doi.org/10.1093/bioinformatics/btn509","mag":"2125706743","pmid":"https://pubmed.ncbi.nlm.nih.gov/18826959"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn509","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn509","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/23/2665/49056290/bioinformatics_24_23_2665.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/23/2665/49056290/bioinformatics_24_23_2665.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022244759","display_name":"Yan Lin","orcid":"https://orcid.org/0000-0001-8034-5946"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yan Lin","raw_affiliation_strings":["1 Department of Biostatistics, 2Department of Medicine, 3Department of Human Genetics, University of Pittsburgh, Pittsburgh, PA and 4Department of Human Genetics, Emory University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, 2Department of Medicine, 3Department of Human Genetics, University of Pittsburgh, Pittsburgh, PA and 4Department of Human Genetics, Emory University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I150468666","https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111972085","display_name":"George C. Tseng","orcid":null},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]},{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"George C. Tseng","raw_affiliation_strings":["1 Department of Biostatistics, 2Department of Medicine, 3Department of Human Genetics, University of Pittsburgh, Pittsburgh, PA and 4Department of Human Genetics, Emory University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, 2Department of Medicine, 3Department of Human Genetics, University of Pittsburgh, Pittsburgh, PA and 4Department of Human Genetics, Emory University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I150468666","https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023193751","display_name":"Soo Yeon Cheong","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Soo Yeon Cheong","raw_affiliation_strings":["1 Department of Biostatistics, 2Department of Medicine, 3Department of Human Genetics, University of Pittsburgh, Pittsburgh, PA and 4Department of Human Genetics, Emory University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, 2Department of Medicine, 3Department of Human Genetics, University of Pittsburgh, Pittsburgh, PA and 4Department of Human Genetics, Emory University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I150468666","https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058117644","display_name":"Lora Jh Bean","orcid":"https://orcid.org/0000-0002-1653-8011"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lora J. H. Bean","raw_affiliation_strings":["1 Department of Biostatistics, 2Department of Medicine, 3Department of Human Genetics, University of Pittsburgh, Pittsburgh, PA and 4Department of Human Genetics, Emory University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, 2Department of Medicine, 3Department of Human Genetics, University of Pittsburgh, Pittsburgh, PA and 4Department of Human Genetics, Emory University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I150468666","https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046083954","display_name":"Stephanie L. Sherman","orcid":"https://orcid.org/0000-0002-1094-0798"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephanie L. Sherman","raw_affiliation_strings":["1 Department of Biostatistics, 2Department of Medicine, 3Department of Human Genetics, University of Pittsburgh, Pittsburgh, PA and 4Department of Human Genetics, Emory University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, 2Department of Medicine, 3Department of Human Genetics, University of Pittsburgh, Pittsburgh, PA and 4Department of Human Genetics, Emory University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I150468666","https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052349035","display_name":"Eleanor Feingold","orcid":"https://orcid.org/0000-0003-2898-6484"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]},{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eleanor Feingold","raw_affiliation_strings":["1 Department of Biostatistics, 2Department of Medicine, 3Department of Human Genetics, University of Pittsburgh, Pittsburgh, PA and 4Department of Human Genetics, Emory University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, 2Department of Medicine, 3Department of Human Genetics, University of Pittsburgh, Pittsburgh, PA and 4Department of Human Genetics, Emory University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I150468666","https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5022244759"],"corresponding_institution_ids":["https://openalex.org/I150468666","https://openalex.org/I170201317"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.9681,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.75132298,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"24","issue":"23","first_page":"2665","last_page":"2671"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genotyping","display_name":"Genotyping","score":0.7428359985351562},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7119830846786499},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.6534925699234009},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.6232087016105652},{"id":"https://openalex.org/keywords/snp-genotyping","display_name":"SNP genotyping","score":0.5334729552268982},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5187623500823975},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.4798245429992676},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40218162536621094},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3787723183631897},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3398948013782501},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3396013081073761},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2289464771747589},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11128649115562439}],"concepts":[{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.7428359985351562},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7119830846786499},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.6534925699234009},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.6232087016105652},{"id":"https://openalex.org/C163691529","wikidata":"https://www.wikidata.org/wiki/Q7391886","display_name":"SNP genotyping","level":5,"score":0.5334729552268982},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5187623500823975},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.4798245429992676},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40218162536621094},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3787723183631897},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3398948013782501},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3396013081073761},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2289464771747589},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11128649115562439}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btn509","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn509","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/23/2665/49056290/bioinformatics_24_23_2665.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18826959","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18826959","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2732271","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2732271","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn509","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn509","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/23/2665/49056290/bioinformatics_24_23_2665.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2125706743.pdf","grobid_xml":"https://content.openalex.org/works/W2125706743.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1977556410","https://openalex.org/W1981981738","https://openalex.org/W1993507262","https://openalex.org/W2000769576","https://openalex.org/W2027748690","https://openalex.org/W2039608769","https://openalex.org/W2059279601","https://openalex.org/W2064816798","https://openalex.org/W2069420421","https://openalex.org/W2080289043","https://openalex.org/W2101510083","https://openalex.org/W2102700898","https://openalex.org/W2103090173","https://openalex.org/W2111695923","https://openalex.org/W2115521447","https://openalex.org/W2119004823","https://openalex.org/W2125255775","https://openalex.org/W2128903991","https://openalex.org/W2136899088","https://openalex.org/W2167850474","https://openalex.org/W2169100657","https://openalex.org/W2170992347","https://openalex.org/W6815532015"],"related_works":["https://openalex.org/W2329658823","https://openalex.org/W2060802262","https://openalex.org/W2202951024","https://openalex.org/W2164855536","https://openalex.org/W2374819724","https://openalex.org/W1508523048","https://openalex.org/W2070581548","https://openalex.org/W2104756498","https://openalex.org/W2936024166","https://openalex.org/W2970780691"],"abstract_inverted_index":{"The":[0],"R":[1],"code":[2],"for":[3],"the":[4,16],"family-based":[5],"genotype":[6],"calling":[7],"methods":[8],"(SNPCaller)":[9],"is":[10],"available":[11],"to":[12],"be":[13],"downloaded":[14],"from":[15],"following":[17],"website:":[18],"http://watson.hgen.pitt.edu/register.":[19]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
