{"id":"https://openalex.org/W2096359150","doi":"https://doi.org/10.1093/bioinformatics/btn493","title":"MonkeySNP: a web portal for non-human primate single nucleotide polymorphisms","display_name":"MonkeySNP: a web portal for non-human primate single nucleotide polymorphisms","publication_year":2008,"publication_date":"2008-09-16","ids":{"openalex":"https://openalex.org/W2096359150","doi":"https://doi.org/10.1093/bioinformatics/btn493","mag":"2096359150","pmid":"https://pubmed.ncbi.nlm.nih.gov/18796476"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn493","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn493","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2579713","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020736329","display_name":"Samone Khouangsathiene","orcid":null},"institutions":[{"id":"https://openalex.org/I102507086","display_name":"Oregon National Primate Research Center","ror":"https://ror.org/05fcfqq67","country_code":"US","type":"facility","lineage":["https://openalex.org/I102507086"]},{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Samone Khouangsathiene","raw_affiliation_strings":["1 Oregon National Primate Research Center, Oregon Health & Science University, 505 N.W. 185th Avenue, Beaverton, OR 97006, 2Department Medical Informatics & Clinical Epidemiology, Oregon Health & Science University, Portland, OR, 3Washington National Primate Research Center, University of Washington, Seattle, WA and 4Department Molecular Medical Genetics, Oregon Health & Science University, Portland, OR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Oregon National Primate Research Center, Oregon Health & Science University, 505 N.W. 185th Avenue, Beaverton, OR 97006, 2Department Medical Informatics & Clinical Epidemiology, Oregon Health & Science University, Portland, OR, 3Washington National Primate Research Center, University of Washington, Seattle, WA and 4Department Molecular Medical Genetics, Oregon Health & Science University, Portland, OR, USA","institution_ids":["https://openalex.org/I102507086","https://openalex.org/I165690674","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067298480","display_name":"Carlo Pearson","orcid":null},"institutions":[{"id":"https://openalex.org/I102507086","display_name":"Oregon National Primate Research Center","ror":"https://ror.org/05fcfqq67","country_code":"US","type":"facility","lineage":["https://openalex.org/I102507086"]},{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carlo Pearson","raw_affiliation_strings":["1 Oregon National Primate Research Center, Oregon Health & Science University, 505 N.W. 185th Avenue, Beaverton, OR 97006, 2Department Medical Informatics & Clinical Epidemiology, Oregon Health & Science University, Portland, OR, 3Washington National Primate Research Center, University of Washington, Seattle, WA and 4Department Molecular Medical Genetics, Oregon Health & Science University, Portland, OR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Oregon National Primate Research Center, Oregon Health & Science University, 505 N.W. 185th Avenue, Beaverton, OR 97006, 2Department Medical Informatics & Clinical Epidemiology, Oregon Health & Science University, Portland, OR, 3Washington National Primate Research Center, University of Washington, Seattle, WA and 4Department Molecular Medical Genetics, Oregon Health & Science University, Portland, OR, USA","institution_ids":["https://openalex.org/I102507086","https://openalex.org/I165690674","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040211516","display_name":"Summer L. Street","orcid":null},"institutions":[{"id":"https://openalex.org/I102507086","display_name":"Oregon National Primate Research Center","ror":"https://ror.org/05fcfqq67","country_code":"US","type":"facility","lineage":["https://openalex.org/I102507086"]},{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Summer Street","raw_affiliation_strings":["1 Oregon National Primate Research Center, Oregon Health & Science University, 505 N.W. 185th Avenue, Beaverton, OR 97006, 2Department Medical Informatics & Clinical Epidemiology, Oregon Health & Science University, Portland, OR, 3Washington National Primate Research Center, University of Washington, Seattle, WA and 4Department Molecular Medical Genetics, Oregon Health & Science University, Portland, OR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Oregon National Primate Research Center, Oregon Health & Science University, 505 N.W. 185th Avenue, Beaverton, OR 97006, 2Department Medical Informatics & Clinical Epidemiology, Oregon Health & Science University, Portland, OR, 3Washington National Primate Research Center, University of Washington, Seattle, WA and 4Department Molecular Medical Genetics, Oregon Health & Science University, Portland, OR, USA","institution_ids":["https://openalex.org/I102507086","https://openalex.org/I165690674","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070480696","display_name":"Betsy Ferguson","orcid":"https://orcid.org/0000-0002-6992-3538"},"institutions":[{"id":"https://openalex.org/I102507086","display_name":"Oregon National Primate Research Center","ror":"https://ror.org/05fcfqq67","country_code":"US","type":"facility","lineage":["https://openalex.org/I102507086"]},{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Betsy Ferguson","raw_affiliation_strings":["1 Oregon National Primate Research Center, Oregon Health & Science University, 505 N.W. 185th Avenue, Beaverton, OR 97006, 2Department Medical Informatics & Clinical Epidemiology, Oregon Health & Science University, Portland, OR, 3Washington National Primate Research Center, University of Washington, Seattle, WA and 4Department Molecular Medical Genetics, Oregon Health & Science University, Portland, OR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Oregon National Primate Research Center, Oregon Health & Science University, 505 N.W. 185th Avenue, Beaverton, OR 97006, 2Department Medical Informatics & Clinical Epidemiology, Oregon Health & Science University, Portland, OR, 3Washington National Primate Research Center, University of Washington, Seattle, WA and 4Department Molecular Medical Genetics, Oregon Health & Science University, Portland, OR, USA","institution_ids":["https://openalex.org/I102507086","https://openalex.org/I165690674","https://openalex.org/I201448701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008812989","display_name":"Christopher Dubay","orcid":null},"institutions":[{"id":"https://openalex.org/I102507086","display_name":"Oregon National Primate Research Center","ror":"https://ror.org/05fcfqq67","country_code":"US","type":"facility","lineage":["https://openalex.org/I102507086"]},{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher Dubay","raw_affiliation_strings":["1 Oregon National Primate Research Center, Oregon Health & Science University, 505 N.W. 185th Avenue, Beaverton, OR 97006, 2Department Medical Informatics & Clinical Epidemiology, Oregon Health & Science University, Portland, OR, 3Washington National Primate Research Center, University of Washington, Seattle, WA and 4Department Molecular Medical Genetics, Oregon Health & Science University, Portland, OR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Oregon National Primate Research Center, Oregon Health & Science University, 505 N.W. 185th Avenue, Beaverton, OR 97006, 2Department Medical Informatics & Clinical Epidemiology, Oregon Health & Science University, Portland, OR, 3Washington National Primate Research Center, University of Washington, Seattle, WA and 4Department Molecular Medical Genetics, Oregon Health & Science University, Portland, OR, USA","institution_ids":["https://openalex.org/I102507086","https://openalex.org/I165690674","https://openalex.org/I201448701"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5020736329"],"corresponding_institution_ids":["https://openalex.org/I102507086","https://openalex.org/I165690674","https://openalex.org/I201448701"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3887,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.62269143,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"24","issue":"22","first_page":"2645","last_page":"2646"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/primate","display_name":"Primate","score":0.6554592251777649},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.583660900592804},{"id":"https://openalex.org/keywords/nucleotide","display_name":"Nucleotide","score":0.5089352130889893},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46991127729415894},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.43417686223983765},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.43311840295791626},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42042669653892517},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11094465851783752},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.10807335376739502},{"id":"https://openalex.org/keywords/paleontology","display_name":"Paleontology","score":0.10051491856575012}],"concepts":[{"id":"https://openalex.org/C2780509455","wikidata":"https://www.wikidata.org/wiki/Q7380","display_name":"Primate","level":2,"score":0.6554592251777649},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.583660900592804},{"id":"https://openalex.org/C512185932","wikidata":"https://www.wikidata.org/wiki/Q28745","display_name":"Nucleotide","level":3,"score":0.5089352130889893},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46991127729415894},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.43417686223983765},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.43311840295791626},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42042669653892517},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11094465851783752},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.10807335376739502},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.10051491856575012}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011323","descriptor_name":"Primates","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011323","descriptor_name":"Primates","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011323","descriptor_name":"Primates","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019013","descriptor_name":"CD40 Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019013","descriptor_name":"CD40 Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019013","descriptor_name":"CD40 Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btn493","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn493","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18796476","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18796476","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2579713","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2579713","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:2579713","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2579713","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G735020625","display_name":null,"funder_award_id":"P51-RR-000163","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G834483484","display_name":null,"funder_award_id":"RR-00163.","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"}],"funders":[{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W195634608","https://openalex.org/W1778405387","https://openalex.org/W1989232148","https://openalex.org/W2011073340","https://openalex.org/W2125548284","https://openalex.org/W6607854640"],"related_works":["https://openalex.org/W4210509889","https://openalex.org/W4379233589","https://openalex.org/W2809151976","https://openalex.org/W2335033221","https://openalex.org/W2092808452","https://openalex.org/W2415449752","https://openalex.org/W1970112624","https://openalex.org/W2335257745","https://openalex.org/W2423544833","https://openalex.org/W2279758810"],"abstract_inverted_index":{"UNLABELLED:":[0],"MonkeySNP":[1,33],"is":[2,34],"a":[3,35],"web-based":[4],"resource":[5],"created":[6],"by":[7],"the":[8,15,38],"Genetic":[9],"Resource":[10],"and":[11,42,49,57],"Informatics":[12],"Program":[13],"at":[14,67],"Oregon":[16],"National":[17],"Primate":[18],"Research":[19],"Center":[20],"to":[21,24,53],"facilitate":[22],"access":[23],"non-human":[25],"primate":[26],"(NHP)":[27],"single":[28],"nucleotide":[29],"polymorphisms":[30],"(SNP)":[31],"data.":[32],"mirror":[36],"of":[37],"NCBI":[39],"dbSNP":[40],"database":[41],"contains":[43],"additional":[44],"NHP":[45],"subpopulation":[46],"genotype":[47,51],"data":[48,64],"visual":[50],"displays":[52],"support":[54],"SNP":[55],"review":[56],"selection.":[58],"AVAILABILITY:":[59],"http://monkeysnp.ohsu.edu/snp/":[60],"SUPPLEMENTARY":[61],"INFORMATION:":[62],"Supplementary":[63],"are":[65],"available":[66],"Bioinformatics":[68],"online.":[69]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-08-18T07:49:30.821534","created_date":"2025-10-10T00:00:00"}
