{"id":"https://openalex.org/W2128612644","doi":"https://doi.org/10.1093/bioinformatics/btn487","title":"Genome annotation in the presence of insertional RNA editing","display_name":"Genome annotation in the presence of insertional RNA editing","publication_year":2008,"publication_date":"2008-09-25","ids":{"openalex":"https://openalex.org/W2128612644","doi":"https://doi.org/10.1093/bioinformatics/btn487","mag":"2128612644","pmid":"https://pubmed.ncbi.nlm.nih.gov/18819938"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn487","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn487","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/22/2571/49055454/bioinformatics_24_22_2571.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/22/2571/49055454/bioinformatics_24_22_2571.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057288631","display_name":"Christina Beargie","orcid":null},"institutions":[{"id":"https://openalex.org/I28792581","display_name":"University of Rochester Medicine","ror":"https://ror.org/00trqv719","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I28792581","https://openalex.org/I5388228"]},{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]},{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christina Beargie","raw_affiliation_strings":["1 COSI, 333 West Broad Street, Columbus, OH 43215, 2Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan, 3Center for RNA Molecular Biology, Case Western Reserve University, Cleveland, OH 44106, 4Department of Biostatistics and Computational Biology, University of Rochester Medical Center, 601 Elmwood Avenue, Box 630 Rochester, NY 14642, 5Department of Physics, 6Department of Biochemistry and 7Center for RNA Biology, The Ohio State University, 191 West Woodruff Avenue, Columbus, OH 43210-1117, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 COSI, 333 West Broad Street, Columbus, OH 43215, 2Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan, 3Center for RNA Molecular Biology, Case Western Reserve University, Cleveland, OH 44106, 4Department of Biostatistics and Computational Biology, University of Rochester Medical Center, 601 Elmwood Avenue, Box 630 Rochester, NY 14642, 5Department of Physics, 6Department of Biochemistry and 7Center for RNA Biology, The Ohio State University, 191 West Woodruff Avenue, Columbus, OH 43210-1117, USA","institution_ids":["https://openalex.org/I28792581","https://openalex.org/I52357470","https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027325453","display_name":"Tsunglin Liu","orcid":"https://orcid.org/0000-0002-1026-1605"},"institutions":[{"id":"https://openalex.org/I28792581","display_name":"University of Rochester Medicine","ror":"https://ror.org/00trqv719","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I28792581","https://openalex.org/I5388228"]},{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]},{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tsunglin Liu","raw_affiliation_strings":["1 COSI, 333 West Broad Street, Columbus, OH 43215, 2Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan, 3Center for RNA Molecular Biology, Case Western Reserve University, Cleveland, OH 44106, 4Department of Biostatistics and Computational Biology, University of Rochester Medical Center, 601 Elmwood Avenue, Box 630 Rochester, NY 14642, 5Department of Physics, 6Department of Biochemistry and 7Center for RNA Biology, The Ohio State University, 191 West Woodruff Avenue, Columbus, OH 43210-1117, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 COSI, 333 West Broad Street, Columbus, OH 43215, 2Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan, 3Center for RNA Molecular Biology, Case Western Reserve University, Cleveland, OH 44106, 4Department of Biostatistics and Computational Biology, University of Rochester Medical Center, 601 Elmwood Avenue, Box 630 Rochester, NY 14642, 5Department of Physics, 6Department of Biochemistry and 7Center for RNA Biology, The Ohio State University, 191 West Woodruff Avenue, Columbus, OH 43210-1117, USA","institution_ids":["https://openalex.org/I28792581","https://openalex.org/I52357470","https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005071019","display_name":"Mark Corriveau","orcid":null},"institutions":[{"id":"https://openalex.org/I28792581","display_name":"University of Rochester Medicine","ror":"https://ror.org/00trqv719","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I28792581","https://openalex.org/I5388228"]},{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]},{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Corriveau","raw_affiliation_strings":["1 COSI, 333 West Broad Street, Columbus, OH 43215, 2Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan, 3Center for RNA Molecular Biology, Case Western Reserve University, Cleveland, OH 44106, 4Department of Biostatistics and Computational Biology, University of Rochester Medical Center, 601 Elmwood Avenue, Box 630 Rochester, NY 14642, 5Department of Physics, 6Department of Biochemistry and 7Center for RNA Biology, The Ohio State University, 191 West Woodruff Avenue, Columbus, OH 43210-1117, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 COSI, 333 West Broad Street, Columbus, OH 43215, 2Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan, 3Center for RNA Molecular Biology, Case Western Reserve University, Cleveland, OH 44106, 4Department of Biostatistics and Computational Biology, University of Rochester Medical Center, 601 Elmwood Avenue, Box 630 Rochester, NY 14642, 5Department of Physics, 6Department of Biochemistry and 7Center for RNA Biology, The Ohio State University, 191 West Woodruff Avenue, Columbus, OH 43210-1117, USA","institution_ids":["https://openalex.org/I28792581","https://openalex.org/I52357470","https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103110105","display_name":"Ha Youn Lee","orcid":"https://orcid.org/0000-0001-7260-2383"},"institutions":[{"id":"https://openalex.org/I28792581","display_name":"University of Rochester Medicine","ror":"https://ror.org/00trqv719","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I28792581","https://openalex.org/I5388228"]},{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]},{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ha Youn Lee","raw_affiliation_strings":["1 COSI, 333 West Broad Street, Columbus, OH 43215, 2Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan, 3Center for RNA Molecular Biology, Case Western Reserve University, Cleveland, OH 44106, 4Department of Biostatistics and Computational Biology, University of Rochester Medical Center, 601 Elmwood Avenue, Box 630 Rochester, NY 14642, 5Department of Physics, 6Department of Biochemistry and 7Center for RNA Biology, The Ohio State University, 191 West Woodruff Avenue, Columbus, OH 43210-1117, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 COSI, 333 West Broad Street, Columbus, OH 43215, 2Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan, 3Center for RNA Molecular Biology, Case Western Reserve University, Cleveland, OH 44106, 4Department of Biostatistics and Computational Biology, University of Rochester Medical Center, 601 Elmwood Avenue, Box 630 Rochester, NY 14642, 5Department of Physics, 6Department of Biochemistry and 7Center for RNA Biology, The Ohio State University, 191 West Woodruff Avenue, Columbus, OH 43210-1117, USA","institution_ids":["https://openalex.org/I28792581","https://openalex.org/I52357470","https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110228442","display_name":"Jonatha M. Gott","orcid":null},"institutions":[{"id":"https://openalex.org/I28792581","display_name":"University of Rochester Medicine","ror":"https://ror.org/00trqv719","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I28792581","https://openalex.org/I5388228"]},{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]},{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonatha Gott","raw_affiliation_strings":["1 COSI, 333 West Broad Street, Columbus, OH 43215, 2Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan, 3Center for RNA Molecular Biology, Case Western Reserve University, Cleveland, OH 44106, 4Department of Biostatistics and Computational Biology, University of Rochester Medical Center, 601 Elmwood Avenue, Box 630 Rochester, NY 14642, 5Department of Physics, 6Department of Biochemistry and 7Center for RNA Biology, The Ohio State University, 191 West Woodruff Avenue, Columbus, OH 43210-1117, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 COSI, 333 West Broad Street, Columbus, OH 43215, 2Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan, 3Center for RNA Molecular Biology, Case Western Reserve University, Cleveland, OH 44106, 4Department of Biostatistics and Computational Biology, University of Rochester Medical Center, 601 Elmwood Avenue, Box 630 Rochester, NY 14642, 5Department of Physics, 6Department of Biochemistry and 7Center for RNA Biology, The Ohio State University, 191 West Woodruff Avenue, Columbus, OH 43210-1117, USA","institution_ids":["https://openalex.org/I28792581","https://openalex.org/I52357470","https://openalex.org/I58956616"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044969846","display_name":"Ralf Bundschuh","orcid":"https://orcid.org/0000-0002-6699-8614"},"institutions":[{"id":"https://openalex.org/I28792581","display_name":"University of Rochester Medicine","ror":"https://ror.org/00trqv719","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I28792581","https://openalex.org/I5388228"]},{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]},{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ralf Bundschuh","raw_affiliation_strings":["1 COSI, 333 West Broad Street, Columbus, OH 43215, 2Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan, 3Center for RNA Molecular Biology, Case Western Reserve University, Cleveland, OH 44106, 4Department of Biostatistics and Computational Biology, University of Rochester Medical Center, 601 Elmwood Avenue, Box 630 Rochester, NY 14642, 5Department of Physics, 6Department of Biochemistry and 7Center for RNA Biology, The Ohio State University, 191 West Woodruff Avenue, Columbus, OH 43210-1117, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 COSI, 333 West Broad Street, Columbus, OH 43215, 2Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan, 3Center for RNA Molecular Biology, Case Western Reserve University, Cleveland, OH 44106, 4Department of Biostatistics and Computational Biology, University of Rochester Medical Center, 601 Elmwood Avenue, Box 630 Rochester, NY 14642, 5Department of Physics, 6Department of Biochemistry and 7Center for RNA Biology, The Ohio State University, 191 West Woodruff Avenue, Columbus, OH 43210-1117, USA","institution_ids":["https://openalex.org/I28792581","https://openalex.org/I52357470","https://openalex.org/I58956616"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5044969846"],"corresponding_institution_ids":["https://openalex.org/I28792581","https://openalex.org/I52357470","https://openalex.org/I58956616"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0397,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.75677331,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"24","issue":"22","first_page":"2571","last_page":"2578"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5852000117301941,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5852000117301941,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.17090000212192535,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10301","display_name":"Mitochondrial Function and Pathology","score":0.029400000348687172,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/physarum-polycephalum","display_name":"Physarum polycephalum","score":0.7389587163925171},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7153177261352539},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.6925209760665894},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6744532585144043},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6690223813056946},{"id":"https://openalex.org/keywords/rna-editing","display_name":"RNA editing","score":0.5918589234352112},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5661358833312988},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5654944181442261},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.48721855878829956},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.47805267572402954},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.41403302550315857},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.3644583225250244}],"concepts":[{"id":"https://openalex.org/C2780855919","wikidata":"https://www.wikidata.org/wiki/Q134950","display_name":"Physarum polycephalum","level":2,"score":0.7389587163925171},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7153177261352539},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.6925209760665894},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6744532585144043},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6690223813056946},{"id":"https://openalex.org/C21786251","wikidata":"https://www.wikidata.org/wiki/Q14886350","display_name":"RNA editing","level":4,"score":0.5918589234352112},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5661358833312988},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5654944181442261},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.48721855878829956},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.47805267572402954},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.41403302550315857},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.3644583225250244},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016839","descriptor_name":"Physarum polycephalum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016839","descriptor_name":"Physarum polycephalum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016839","descriptor_name":"Physarum polycephalum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017393","descriptor_name":"RNA Editing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017393","descriptor_name":"RNA Editing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017393","descriptor_name":"RNA Editing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018503","descriptor_name":"Genome, Protozoan","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018503","descriptor_name":"Genome, Protozoan","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018503","descriptor_name":"Genome, Protozoan","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054629","descriptor_name":"Genome, Mitochondrial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054629","descriptor_name":"Genome, Mitochondrial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054629","descriptor_name":"Genome, Mitochondrial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btn487","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn487","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/22/2571/49055454/bioinformatics_24_22_2571.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18819938","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18819938","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2579709","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2579709","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn487","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn487","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/22/2571/49055454/bioinformatics_24_22_2571.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1024799076","display_name":"Statistical Mechanics of Biological Sequence Analysis","funder_award_id":"0404615","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G17526896","display_name":null,"funder_award_id":"N01-AI-50020","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G1842894679","display_name":"Statistical Physics Approaches to RNA Editing","funder_award_id":"0706002","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1910618993","display_name":null,"funder_award_id":"GM-54663","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4056664151","display_name":"ADVANCE Institutional Transformation Award","funder_award_id":"0245054","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G596543133","display_name":null,"funder_award_id":"N01-AI-50020","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6610236327","display_name":"The Ohio State University Summer Undergraduate Physics Institute","funder_award_id":"0242665","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309374","display_name":"Ohio State University","ror":"https://ror.org/00rs6vg23"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337367","display_name":"Division of Materials Research","ror":"https://ror.org/01pc7k308"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128612644.pdf","grobid_xml":"https://content.openalex.org/works/W2128612644.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W22580158","https://openalex.org/W1502060396","https://openalex.org/W1524970720","https://openalex.org/W1569904835","https://openalex.org/W1592907766","https://openalex.org/W1600029145","https://openalex.org/W1680720482","https://openalex.org/W1981236986","https://openalex.org/W1982917825","https://openalex.org/W1988670311","https://openalex.org/W1993158258","https://openalex.org/W1995886164","https://openalex.org/W2026808309","https://openalex.org/W2044502249","https://openalex.org/W2050455122","https://openalex.org/W2054698853","https://openalex.org/W2074580579","https://openalex.org/W2097555181","https://openalex.org/W2110813549","https://openalex.org/W2111910558","https://openalex.org/W2122503964","https://openalex.org/W2139186079","https://openalex.org/W2143210482","https://openalex.org/W2153641622","https://openalex.org/W2158714788","https://openalex.org/W2160053034","https://openalex.org/W2166187656","https://openalex.org/W2312194337","https://openalex.org/W2338478053","https://openalex.org/W3047398590","https://openalex.org/W4236154753","https://openalex.org/W6636006497","https://openalex.org/W6674463856","https://openalex.org/W6857693286"],"related_works":["https://openalex.org/W2279845149","https://openalex.org/W2024689260","https://openalex.org/W2980532692","https://openalex.org/W2497609083","https://openalex.org/W2749991225","https://openalex.org/W4244366763","https://openalex.org/W2112451705","https://openalex.org/W148719309","https://openalex.org/W1976142521","https://openalex.org/W2884291362"],"abstract_inverted_index":{"MOTIVATION:":[0],"Insertional":[1],"RNA":[2,14,85],"editing":[3,57],"renders":[4],"gene":[5,48,79],"prediction":[6,49,80],"very":[7],"difficult":[8],"compared":[9],"to":[10,39],"organisms":[11,82],"without":[12],"such":[13,64],"editing.":[15,86],"A":[16],"case":[17],"in":[18,27,81,125,138],"point":[19],"is":[20],"the":[21,33,69,94,111,119,148,157],"mitochondrial":[22,70,140],"genome":[23,71],"of":[24,32,35,63,72,105,110,121,147],"Physarum":[25],"polycephalum":[26],"which":[28],"only":[29],"about":[30],"one-third":[31],"number":[34,120],"genes":[36,124,133],"that":[37,51,134],"are":[38,45,58,135,152],"be":[40],"expected":[41,137],"given":[42],"its":[43],"length":[44],"annotated.":[46],"Thus,":[47],"methods":[50,98],"explicitly":[52],"take":[53],"into":[54],"account":[55],"insertional":[56,84],"needed":[59],"for":[60,78],"successful":[61],"annotation":[62],"genomes.":[65],"RESULTS:":[66],"We":[67,87,115],"annotate":[68],"P.polycephalum":[73],"using":[74],"several":[75,130],"different":[76,97],"approaches":[77],"with":[83],"computationally":[88],"validate":[89,108],"our":[90],"annotations":[91],"by":[92],"comparing":[93],"results":[95],"from":[96,156],"against":[99],"each":[100],"other":[101],"and":[102,128],"as":[103],"proof":[104],"concept":[106],"experimentally":[107],"two":[109],"newly":[112],"predicted":[113],"genes.":[114],"more":[116],"than":[117],"double":[118],"annotated":[122],"putative":[123],"this":[126],"organism":[127],"find":[129],"intriguing":[131],"candidate":[132],"not":[136],"a":[139],"genome.":[141],"AVAILABILITY:":[142],"The":[143],"C":[144],"source":[145],"code":[146],"programs":[149],"described":[150],"here":[151],"available":[153],"upon":[154],"request":[155],"corresponding":[158],"author.":[159]},"counts_by_year":[{"year":2018,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
