{"id":"https://openalex.org/W2160688793","doi":"https://doi.org/10.1093/bioinformatics/btn441","title":"GOfetcher: a database with complex searching facility for gene ontology","display_name":"GOfetcher: a database with complex searching facility for gene ontology","publication_year":2008,"publication_date":"2008-08-26","ids":{"openalex":"https://openalex.org/W2160688793","doi":"https://doi.org/10.1093/bioinformatics/btn441","mag":"2160688793","pmid":"https://pubmed.ncbi.nlm.nih.gov/18728045"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn441","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn441","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/21/2561/49055625/bioinformatics_24_21_2561.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/21/2561/49055625/bioinformatics_24_21_2561.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035578057","display_name":"Mehdi Pirooznia","orcid":"https://orcid.org/0000-0002-4210-6458"},"institutions":[{"id":"https://openalex.org/I87303767","display_name":"U.S. Army Engineer Research and Development Center","ror":"https://ror.org/027mhn368","country_code":"US","type":"facility","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1306490931","https://openalex.org/I1330347796","https://openalex.org/I87303767"]},{"id":"https://openalex.org/I4210088792","display_name":"United States Army","ror":"https://ror.org/00afsp483","country_code":"US","type":"funder","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I4210088792"]},{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mehdi Pirooznia","raw_affiliation_strings":["1 Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406 and 2Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS 39180, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406 and 2Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS 39180, USA","institution_ids":["https://openalex.org/I87303767","https://openalex.org/I4210088792","https://openalex.org/I44854399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032640973","display_name":"Tanwir Habib","orcid":"https://orcid.org/0000-0002-2301-2704"},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]},{"id":"https://openalex.org/I87303767","display_name":"U.S. Army Engineer Research and Development Center","ror":"https://ror.org/027mhn368","country_code":"US","type":"facility","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1306490931","https://openalex.org/I1330347796","https://openalex.org/I87303767"]},{"id":"https://openalex.org/I4210088792","display_name":"United States Army","ror":"https://ror.org/00afsp483","country_code":"US","type":"funder","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I4210088792"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tanwir Habib","raw_affiliation_strings":["1 Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406 and 2Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS 39180, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406 and 2Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS 39180, USA","institution_ids":["https://openalex.org/I87303767","https://openalex.org/I4210088792","https://openalex.org/I44854399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075371599","display_name":"Edward J. Perkins","orcid":"https://orcid.org/0000-0003-1693-7714"},"institutions":[{"id":"https://openalex.org/I87303767","display_name":"U.S. Army Engineer Research and Development Center","ror":"https://ror.org/027mhn368","country_code":"US","type":"facility","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1306490931","https://openalex.org/I1330347796","https://openalex.org/I87303767"]},{"id":"https://openalex.org/I4210088792","display_name":"United States Army","ror":"https://ror.org/00afsp483","country_code":"US","type":"funder","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I4210088792"]},{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward J. Perkins","raw_affiliation_strings":["1 Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406 and 2Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS 39180, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406 and 2Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS 39180, USA","institution_ids":["https://openalex.org/I87303767","https://openalex.org/I4210088792","https://openalex.org/I44854399"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042435594","display_name":"Youping Deng","orcid":"https://orcid.org/0000-0002-5951-8213"},"institutions":[{"id":"https://openalex.org/I87303767","display_name":"U.S. Army Engineer Research and Development Center","ror":"https://ror.org/027mhn368","country_code":"US","type":"facility","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1306490931","https://openalex.org/I1330347796","https://openalex.org/I87303767"]},{"id":"https://openalex.org/I4210088792","display_name":"United States Army","ror":"https://ror.org/00afsp483","country_code":"US","type":"funder","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I4210088792"]},{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Youping Deng","raw_affiliation_strings":["1 Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406 and 2Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS 39180, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406 and 2Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS 39180, USA","institution_ids":["https://openalex.org/I87303767","https://openalex.org/I4210088792","https://openalex.org/I44854399"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5035578057"],"corresponding_institution_ids":["https://openalex.org/I4210088792","https://openalex.org/I44854399","https://openalex.org/I87303767"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5214,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.822986,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"24","issue":"21","first_page":"2561","last_page":"2563"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7953057289123535},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.7541992664337158},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.6636714935302734},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5830885767936707},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5252673029899597},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5195598602294922},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.5118092894554138},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.46637800335884094},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.4563567638397217},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.08154764771461487}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7953057289123535},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.7541992664337158},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.6636714935302734},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5830885767936707},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5252673029899597},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5195598602294922},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.5118092894554138},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.46637800335884094},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.4563567638397217},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.08154764771461487},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btn441","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn441","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/21/2561/49055625/bioinformatics_24_21_2561.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18728045","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18728045","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:aquila.usm.edu:fac_pubs-9628","is_oa":false,"landing_page_url":"http://logon.lynx.lib.usm.edu/login?url=http://bioinformatics.oxfordjournals.org/content/24/21/2561.full.pdf+html","pdf_url":null,"source":{"id":"https://openalex.org/S4306402529","display_name":"Aquila Digital Community (University of Southern Mississippi)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I44854399","host_organization_name":"University of Southern Mississippi","host_organization_lineage":["https://openalex.org/I44854399"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn441","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn441","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/21/2561/49055625/bioinformatics_24_21_2561.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2160688793.pdf","grobid_xml":"https://content.openalex.org/works/W2160688793.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1481246388","https://openalex.org/W2075495563","https://openalex.org/W2103017472","https://openalex.org/W2120423098","https://openalex.org/W2122261141","https://openalex.org/W2150233912","https://openalex.org/W2164154943","https://openalex.org/W4242161096","https://openalex.org/W6628708307"],"related_works":["https://openalex.org/W2393185060","https://openalex.org/W1521911848","https://openalex.org/W1788528807","https://openalex.org/W2264478587","https://openalex.org/W1772728300","https://openalex.org/W2361533086","https://openalex.org/W188567224","https://openalex.org/W2002787305","https://openalex.org/W1597555987","https://openalex.org/W2087742606"],"abstract_inverted_index":{"An":[0],"important":[1],"contribution":[2],"to":[3,10],"the":[4,15,31,66,76,85,140],"Gene":[5],"Ontology":[6],"(GO)":[7],"project":[8,68],"is":[9,42,148],"develop":[11],"tools":[12,23,41],"that":[13,43],"facilitate":[14],"creation,":[16],"maintenance":[17],"and":[18,29,69,91,139],"use":[19],"of":[20,39,48,72],"ontologies.":[21],"Several":[22],"have":[24],"been":[25],"created":[26],"for":[27,65,75,83,94],"communicating":[28],"using":[30],"GO":[32,67,121],"project.":[33],"However,":[34],"a":[35,49,55,60,70,99,108],"limitation":[36],"with":[37,59],"most":[38],"these":[40],"they":[44],"suffer":[45],"from":[46],"lack":[47],"comprehensive":[50,62],"search":[51,63,101],"facility.":[52],"We":[53],"developed":[54],"web":[56],"application,":[57],"GOfetcher,":[58],"very":[61],"facility":[64],"variety":[71],"output":[73,124],"formats":[74],"results.":[77],"GOfetcher":[78,127],"has":[79],"three":[80],"different":[81,133],"levels":[82],"searching":[84],"GO:":[86],"'Quick":[87],"Search',":[88],"'Advanced":[89],"Search'":[90],"'Upload":[92],"Files'":[93],"searching.":[95],"The":[96,123,146],"application":[97],"includes":[98],"unique":[100],"option":[102],"which":[103,114],"generates":[104],"gene":[105],"information":[106],"given":[107],"nucleotide":[109],"or":[110],"protein":[111],"accession":[112],"number":[113],"can":[115,128],"then":[116],"be":[117,129],"used":[118],"in":[119,126],"generating":[120],"information.":[122],"data":[125],"saved":[130],"into":[131],"several":[132],"formats;":[134],"including":[135],"spreadsheet,":[136],"comma-separated":[137],"values":[138],"extensible":[141],"markup":[142],"language":[143],"(XML)":[144],"format.":[145],"database":[147],"available":[149],"at":[150],"http://mcbc.usm.edu/gofetcher/.":[151]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
