{"id":"https://openalex.org/W2097059553","doi":"https://doi.org/10.1093/bioinformatics/btn414","title":"Model-based prediction of sequence alignment quality","display_name":"Model-based prediction of sequence alignment quality","publication_year":2008,"publication_date":"2008-08-04","ids":{"openalex":"https://openalex.org/W2097059553","doi":"https://doi.org/10.1093/bioinformatics/btn414","mag":"2097059553","pmid":"https://pubmed.ncbi.nlm.nih.gov/18678587"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn414","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn414","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/19/2165/49052264/bioinformatics_24_19_2165.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/19/2165/49052264/bioinformatics_24_19_2165.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007884721","display_name":"Virpi Ahola","orcid":"https://orcid.org/0000-0003-0590-6437"},"institutions":[{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I4210126318","display_name":"Tampere University Hospital","ror":"https://ror.org/02hvt5f17","country_code":"FI","type":"healthcare","lineage":["https://openalex.org/I4210126318"]},{"id":"https://openalex.org/I4210163838","display_name":"Agrifood Research Finland","ror":"https://ror.org/05kh5wx29","country_code":"FI","type":"government","lineage":["https://openalex.org/I3017910207","https://openalex.org/I4210153464","https://openalex.org/I4210163838"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Virpi Ahola","raw_affiliation_strings":["1 Biotechnology and Food Research, MTT Agrifood Research Finland, FI-31600 Jokioinen, 2Department of Statistics, 3Department of Mathematics, FI-20014, University of Turku, 4Institute of Medical Technology, FI-33014, University of Tampere and 5Tampere University Hospital, FI-33520 Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"1 Biotechnology and Food Research, MTT Agrifood Research Finland, FI-31600 Jokioinen, 2Department of Statistics, 3Department of Mathematics, FI-20014, University of Turku, 4Institute of Medical Technology, FI-33014, University of Tampere and 5Tampere University Hospital, FI-33520 Tampere, Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I4210126318","https://openalex.org/I4210133110","https://openalex.org/I4210163838"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016681267","display_name":"Tero Aittokallio","orcid":"https://orcid.org/0000-0002-0886-9769"},"institutions":[{"id":"https://openalex.org/I4210163838","display_name":"Agrifood Research Finland","ror":"https://ror.org/05kh5wx29","country_code":"FI","type":"government","lineage":["https://openalex.org/I3017910207","https://openalex.org/I4210153464","https://openalex.org/I4210163838"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]},{"id":"https://openalex.org/I4210126318","display_name":"Tampere University Hospital","ror":"https://ror.org/02hvt5f17","country_code":"FI","type":"healthcare","lineage":["https://openalex.org/I4210126318"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tero Aittokallio","raw_affiliation_strings":["1 Biotechnology and Food Research, MTT Agrifood Research Finland, FI-31600 Jokioinen, 2Department of Statistics, 3Department of Mathematics, FI-20014, University of Turku, 4Institute of Medical Technology, FI-33014, University of Tampere and 5Tampere University Hospital, FI-33520 Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"1 Biotechnology and Food Research, MTT Agrifood Research Finland, FI-31600 Jokioinen, 2Department of Statistics, 3Department of Mathematics, FI-20014, University of Turku, 4Institute of Medical Technology, FI-33014, University of Tampere and 5Tampere University Hospital, FI-33520 Tampere, Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I4210126318","https://openalex.org/I4210133110","https://openalex.org/I4210163838"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020878971","display_name":"Mauno Vihinen","orcid":"https://orcid.org/0000-0002-9614-7976"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]},{"id":"https://openalex.org/I4210126318","display_name":"Tampere University Hospital","ror":"https://ror.org/02hvt5f17","country_code":"FI","type":"healthcare","lineage":["https://openalex.org/I4210126318"]},{"id":"https://openalex.org/I4210163838","display_name":"Agrifood Research Finland","ror":"https://ror.org/05kh5wx29","country_code":"FI","type":"government","lineage":["https://openalex.org/I3017910207","https://openalex.org/I4210153464","https://openalex.org/I4210163838"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Mauno Vihinen","raw_affiliation_strings":["1 Biotechnology and Food Research, MTT Agrifood Research Finland, FI-31600 Jokioinen, 2Department of Statistics, 3Department of Mathematics, FI-20014, University of Turku, 4Institute of Medical Technology, FI-33014, University of Tampere and 5Tampere University Hospital, FI-33520 Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"1 Biotechnology and Food Research, MTT Agrifood Research Finland, FI-31600 Jokioinen, 2Department of Statistics, 3Department of Mathematics, FI-20014, University of Turku, 4Institute of Medical Technology, FI-33014, University of Tampere and 5Tampere University Hospital, FI-33520 Tampere, Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I4210126318","https://openalex.org/I4210133110","https://openalex.org/I4210163838"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072034678","display_name":"Esa Uusipaikka","orcid":null},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I4210163838","display_name":"Agrifood Research Finland","ror":"https://ror.org/05kh5wx29","country_code":"FI","type":"government","lineage":["https://openalex.org/I3017910207","https://openalex.org/I4210153464","https://openalex.org/I4210163838"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]},{"id":"https://openalex.org/I4210126318","display_name":"Tampere University Hospital","ror":"https://ror.org/02hvt5f17","country_code":"FI","type":"healthcare","lineage":["https://openalex.org/I4210126318"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Esa Uusipaikka","raw_affiliation_strings":["1 Biotechnology and Food Research, MTT Agrifood Research Finland, FI-31600 Jokioinen, 2Department of Statistics, 3Department of Mathematics, FI-20014, University of Turku, 4Institute of Medical Technology, FI-33014, University of Tampere and 5Tampere University Hospital, FI-33520 Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"1 Biotechnology and Food Research, MTT Agrifood Research Finland, FI-31600 Jokioinen, 2Department of Statistics, 3Department of Mathematics, FI-20014, University of Turku, 4Institute of Medical Technology, FI-33014, University of Tampere and 5Tampere University Hospital, FI-33520 Tampere, Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I4210126318","https://openalex.org/I4210133110","https://openalex.org/I4210163838"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5007884721"],"corresponding_institution_ids":["https://openalex.org/I155660961","https://openalex.org/I4210126318","https://openalex.org/I4210133110","https://openalex.org/I4210163838"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5532,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.67523278,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"24","issue":"19","first_page":"2165","last_page":"2171"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9483000040054321,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.836692750453949},{"id":"https://openalex.org/keywords/quality-score","display_name":"Quality Score","score":0.8183282613754272},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6315654516220093},{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.6315577030181885},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.624221920967102},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.6179494857788086},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5824905633926392},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.5240221619606018},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5059558749198914},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.46603459119796753},{"id":"https://openalex.org/keywords/score","display_name":"Score","score":0.4292317032814026},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3481404781341553},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22520053386688232},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.17273777723312378},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14671912789344788},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10377320647239685},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.09795618057250977}],"concepts":[{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.836692750453949},{"id":"https://openalex.org/C2779346075","wikidata":"https://www.wikidata.org/wiki/Q7268763","display_name":"Quality Score","level":3,"score":0.8183282613754272},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6315654516220093},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.6315577030181885},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.624221920967102},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.6179494857788086},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5824905633926392},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.5240221619606018},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5059558749198914},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.46603459119796753},{"id":"https://openalex.org/C65660741","wikidata":"https://www.wikidata.org/wiki/Q3952743","display_name":"Score","level":2,"score":0.4292317032814026},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3481404781341553},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22520053386688232},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.17273777723312378},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14671912789344788},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10377320647239685},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.09795618057250977},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btn414","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn414","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/19/2165/49052264/bioinformatics_24_19_2165.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18678587","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18678587","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.848.2261","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.848.2261","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2008/08/04/bioinformatics.btn414.full.pdf","raw_type":"text"},{"id":"pmh:oai:jukuri.luke.fi:10024/474785","is_oa":false,"landing_page_url":"http://jukuri.luke.fi/handle/10024/474785","pdf_url":null,"source":{"id":"https://openalex.org/S4306400569","display_name":"Jukuri (Natural Resources Institute Finland (Luke))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I3017910207","host_organization_name":"Natural Resources Institute Finland","host_organization_lineage":["https://openalex.org/I3017910207"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"b"},{"id":"pmh:oai:lup.lub.lu.se:26f39791-5363-4c7b-9076-e4a9196d44a2","is_oa":false,"landing_page_url":"https://lup.lub.lu.se/record/3635008","pdf_url":null,"source":{"id":"https://openalex.org/S4306400536","display_name":"Lund University Publications (Lund University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I187531555","host_organization_name":"Lund University","host_organization_lineage":["https://openalex.org/I187531555"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics; 24(19), pp 2165-2171 (2008)","raw_type":"contributiontojournal/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn414","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn414","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/19/2165/49052264/bioinformatics_24_19_2165.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6700000166893005}],"awards":[],"funders":[{"id":"https://openalex.org/F4320326518","display_name":"Tays","ror":"https://ror.org/02hvt5f17"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2097059553.pdf","grobid_xml":"https://content.openalex.org/works/W2097059553.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W282666689","https://openalex.org/W290667870","https://openalex.org/W353011834","https://openalex.org/W902069724","https://openalex.org/W1590240800","https://openalex.org/W1596515083","https://openalex.org/W1775447850","https://openalex.org/W1870852322","https://openalex.org/W1976527049","https://openalex.org/W1991538681","https://openalex.org/W2002805476","https://openalex.org/W2003967338","https://openalex.org/W2004178884","https://openalex.org/W2007939821","https://openalex.org/W2030750720","https://openalex.org/W2033339460","https://openalex.org/W2036780345","https://openalex.org/W2040490772","https://openalex.org/W2057368087","https://openalex.org/W2060791849","https://openalex.org/W2088156508","https://openalex.org/W2097382368","https://openalex.org/W2102502076","https://openalex.org/W2107029482","https://openalex.org/W2108187446","https://openalex.org/W2111551123","https://openalex.org/W2115097088","https://openalex.org/W2118851904","https://openalex.org/W2127774996","https://openalex.org/W2128613007","https://openalex.org/W2132926880","https://openalex.org/W2139520668","https://openalex.org/W2140872496","https://openalex.org/W2141411672","https://openalex.org/W2143292980","https://openalex.org/W2144362290","https://openalex.org/W2147556320","https://openalex.org/W2148311769","https://openalex.org/W2149758239","https://openalex.org/W2155320525","https://openalex.org/W2160719354","https://openalex.org/W2162923930","https://openalex.org/W2166718648","https://openalex.org/W2169602699","https://openalex.org/W4238424869","https://openalex.org/W4238974179","https://openalex.org/W4285719527","https://openalex.org/W6601556147","https://openalex.org/W6624051439","https://openalex.org/W6652411589"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2111937814","https://openalex.org/W1870852322","https://openalex.org/W2097059553","https://openalex.org/W2107103206","https://openalex.org/W3210847500","https://openalex.org/W3040881148","https://openalex.org/W2219204707","https://openalex.org/W2013076816","https://openalex.org/W2484691257"],"abstract_inverted_index":{"The":[0],"method":[1],"is":[2],"freely":[3],"available":[4],"at":[5],"http://www.mtt.fi/AlignmentQuality/.":[6]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
