{"id":"https://openalex.org/W2108177596","doi":"https://doi.org/10.1093/bioinformatics/btn407","title":"BLogo: a tool for visualization of bias in biological sequences","display_name":"BLogo: a tool for visualization of bias in biological sequences","publication_year":2008,"publication_date":"2008-06-04","ids":{"openalex":"https://openalex.org/W2108177596","doi":"https://doi.org/10.1093/bioinformatics/btn407","mag":"2108177596","pmid":"https://pubmed.ncbi.nlm.nih.gov/18682425"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn407","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn407","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101700361","display_name":"Wencheng Li","orcid":"https://orcid.org/0000-0003-1783-2009"},"institutions":[{"id":"https://openalex.org/I203238179","display_name":"Rhodes University","ror":"https://ror.org/016sewp10","country_code":"ZA","type":"education","lineage":["https://openalex.org/I203238179"]},{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN","ZA"],"is_corresponding":false,"raw_author_name":"Wencheng Li","raw_affiliation_strings":["1 School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510641, 2National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, 3College of Light Industry and Food Sciences, Key Lab of Fermentation and Enzyme Engineering, South China University of Technology, Guangzhou 510641, China and 4Department of Biochemistry, Microbiology and Biotechnology, Rhodes University, Grahamstown 6139, South Africa"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510641, 2National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, 3College of Light Industry and Food Sciences, Key Lab of Fermentation and Enzyme Engineering, South China University of Technology, Guangzhou 510641, China and 4Department of Biochemistry, Microbiology and Biotechnology, Rhodes University, Grahamstown 6139, South Africa","institution_ids":["https://openalex.org/I203238179","https://openalex.org/I204823248","https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072820962","display_name":"Bo Yang","orcid":"https://orcid.org/0000-0002-3183-5567"},"institutions":[{"id":"https://openalex.org/I203238179","display_name":"Rhodes University","ror":"https://ror.org/016sewp10","country_code":"ZA","type":"education","lineage":["https://openalex.org/I203238179"]},{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN","ZA"],"is_corresponding":false,"raw_author_name":"Bo Yang","raw_affiliation_strings":["1 School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510641, 2National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, 3College of Light Industry and Food Sciences, Key Lab of Fermentation and Enzyme Engineering, South China University of Technology, Guangzhou 510641, China and 4Department of Biochemistry, Microbiology and Biotechnology, Rhodes University, Grahamstown 6139, South Africa"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510641, 2National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, 3College of Light Industry and Food Sciences, Key Lab of Fermentation and Enzyme Engineering, South China University of Technology, Guangzhou 510641, China and 4Department of Biochemistry, Microbiology and Biotechnology, Rhodes University, Grahamstown 6139, South Africa","institution_ids":["https://openalex.org/I203238179","https://openalex.org/I204823248","https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100831027","display_name":"Shaoguang Liang","orcid":null},"institutions":[{"id":"https://openalex.org/I203238179","display_name":"Rhodes University","ror":"https://ror.org/016sewp10","country_code":"ZA","type":"education","lineage":["https://openalex.org/I203238179"]},{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN","ZA"],"is_corresponding":false,"raw_author_name":"Shaoguang Liang","raw_affiliation_strings":["1 School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510641, 2National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, 3College of Light Industry and Food Sciences, Key Lab of Fermentation and Enzyme Engineering, South China University of Technology, Guangzhou 510641, China and 4Department of Biochemistry, Microbiology and Biotechnology, Rhodes University, Grahamstown 6139, South Africa"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510641, 2National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, 3College of Light Industry and Food Sciences, Key Lab of Fermentation and Enzyme Engineering, South China University of Technology, Guangzhou 510641, China and 4Department of Biochemistry, Microbiology and Biotechnology, Rhodes University, Grahamstown 6139, South Africa","institution_ids":["https://openalex.org/I203238179","https://openalex.org/I204823248","https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100700948","display_name":"Yonghua Wang","orcid":"https://orcid.org/0009-0004-7502-2519"},"institutions":[{"id":"https://openalex.org/I203238179","display_name":"Rhodes University","ror":"https://ror.org/016sewp10","country_code":"ZA","type":"education","lineage":["https://openalex.org/I203238179"]},{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN","ZA"],"is_corresponding":false,"raw_author_name":"Yonghua Wang","raw_affiliation_strings":["1 School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510641, 2National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, 3College of Light Industry and Food Sciences, Key Lab of Fermentation and Enzyme Engineering, South China University of Technology, Guangzhou 510641, China and 4Department of Biochemistry, Microbiology and Biotechnology, Rhodes University, Grahamstown 6139, South Africa"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510641, 2National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, 3College of Light Industry and Food Sciences, Key Lab of Fermentation and Enzyme Engineering, South China University of Technology, Guangzhou 510641, China and 4Department of Biochemistry, Microbiology and Biotechnology, Rhodes University, Grahamstown 6139, South Africa","institution_ids":["https://openalex.org/I203238179","https://openalex.org/I204823248","https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109159851","display_name":"Chris G. Whiteley","orcid":null},"institutions":[{"id":"https://openalex.org/I203238179","display_name":"Rhodes University","ror":"https://ror.org/016sewp10","country_code":"ZA","type":"education","lineage":["https://openalex.org/I203238179"]},{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN","ZA"],"is_corresponding":false,"raw_author_name":"Chris Whiteley","raw_affiliation_strings":["1 School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510641, 2National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, 3College of Light Industry and Food Sciences, Key Lab of Fermentation and Enzyme Engineering, South China University of Technology, Guangzhou 510641, China and 4Department of Biochemistry, Microbiology and Biotechnology, Rhodes University, Grahamstown 6139, South Africa"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510641, 2National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, 3College of Light Industry and Food Sciences, Key Lab of Fermentation and Enzyme Engineering, South China University of Technology, Guangzhou 510641, China and 4Department of Biochemistry, Microbiology and Biotechnology, Rhodes University, Grahamstown 6139, South Africa","institution_ids":["https://openalex.org/I203238179","https://openalex.org/I204823248","https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101294749","display_name":"Yicheng Cao","orcid":null},"institutions":[{"id":"https://openalex.org/I203238179","display_name":"Rhodes University","ror":"https://ror.org/016sewp10","country_code":"ZA","type":"education","lineage":["https://openalex.org/I203238179"]},{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN","ZA"],"is_corresponding":false,"raw_author_name":"Yicheng Cao","raw_affiliation_strings":["1 School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510641, 2National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, 3College of Light Industry and Food Sciences, Key Lab of Fermentation and Enzyme Engineering, South China University of Technology, Guangzhou 510641, China and 4Department of Biochemistry, Microbiology and Biotechnology, Rhodes University, Grahamstown 6139, South Africa"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510641, 2National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, 3College of Light Industry and Food Sciences, Key Lab of Fermentation and Enzyme Engineering, South China University of Technology, Guangzhou 510641, China and 4Department of Biochemistry, Microbiology and Biotechnology, Rhodes University, Grahamstown 6139, South Africa","institution_ids":["https://openalex.org/I203238179","https://openalex.org/I204823248","https://openalex.org/I90610280"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100319678","display_name":"Xiaoning Wang","orcid":"https://orcid.org/0000-0003-2427-3663"},"institutions":[{"id":"https://openalex.org/I203238179","display_name":"Rhodes University","ror":"https://ror.org/016sewp10","country_code":"ZA","type":"education","lineage":["https://openalex.org/I203238179"]},{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN","ZA"],"is_corresponding":false,"raw_author_name":"Xiaoning Wang","raw_affiliation_strings":["1 School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510641, 2National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, 3College of Light Industry and Food Sciences, Key Lab of Fermentation and Enzyme Engineering, South China University of Technology, Guangzhou 510641, China and 4Department of Biochemistry, Microbiology and Biotechnology, Rhodes University, Grahamstown 6139, South Africa"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510641, 2National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, 3College of Light Industry and Food Sciences, Key Lab of Fermentation and Enzyme Engineering, South China University of Technology, Guangzhou 510641, China and 4Department of Biochemistry, Microbiology and Biotechnology, Rhodes University, Grahamstown 6139, South Africa","institution_ids":["https://openalex.org/I203238179","https://openalex.org/I204823248","https://openalex.org/I90610280"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2599,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.58777611,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"24","issue":"19","first_page":"2254","last_page":"2255"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.8414999842643738,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.8414999842643738,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.03660000115633011,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.034299999475479126,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.8903100490570068},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6544800996780396},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.6225603818893433},{"id":"https://openalex.org/keywords/position","display_name":"Position (finance)","score":0.5531986355781555},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5199976563453674},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5058376789093018},{"id":"https://openalex.org/keywords/reading","display_name":"Reading (process)","score":0.4516899883747101},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.41929471492767334},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.39365315437316895},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3349505066871643},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3214406669139862},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2963296175003052}],"concepts":[{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.8903100490570068},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6544800996780396},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.6225603818893433},{"id":"https://openalex.org/C198082294","wikidata":"https://www.wikidata.org/wiki/Q3399648","display_name":"Position (finance)","level":2,"score":0.5531986355781555},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5199976563453674},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5058376789093018},{"id":"https://openalex.org/C554936623","wikidata":"https://www.wikidata.org/wiki/Q199657","display_name":"Reading (process)","level":2,"score":0.4516899883747101},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.41929471492767334},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.39365315437316895},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3349505066871643},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3214406669139862},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2963296175003052},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btn407","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn407","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18682425","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18682425","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8399999737739563,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1967353025","https://openalex.org/W2013989044","https://openalex.org/W2041877620","https://openalex.org/W2110949266","https://openalex.org/W2158266834","https://openalex.org/W2170219629","https://openalex.org/W2170909437","https://openalex.org/W7074172428"],"related_works":["https://openalex.org/W2480056510","https://openalex.org/W2412623563","https://openalex.org/W190299232","https://openalex.org/W1521481095","https://openalex.org/W594361471","https://openalex.org/W2604964690","https://openalex.org/W2417897055","https://openalex.org/W2613359208","https://openalex.org/W2291334382","https://openalex.org/W3081644756"],"abstract_inverted_index":{"UNLABELLED:":[0],"Blogo":[1],"is":[2,72,104],"a":[3,25,58],"web-based":[4],"tool":[5],"that":[6,88],"detects":[7],"and":[8,21,31,85,107],"displays":[9],"statistically":[10],"significant":[11,90],"position-specific":[12],"sequence":[13],"bias":[14],"with":[15],"reduced":[16],"background":[17,45,64],"noise.":[18,65],"The":[19,66,97],"over-represented":[20],"under-represented":[22],"symbols":[23],"in":[24,40,82,93],"particular":[26],"position":[27,84],"are":[28,39,89,91],"shown":[29],"above":[30],"below":[32],"the":[33,37,44,54,63,76,94,102],"zero":[34],"line.":[35],"When":[36],"sequences":[38],"open":[41],"reading":[42],"frames,":[43],"frequency":[46],"of":[47,57,79,101],"nucleotides":[48],"could":[49],"be":[50,109],"calculated":[51],"separately":[52],"for":[53],"three":[55],"positions":[56],"codon,":[59],"thus":[60],"greatly":[61],"reducing":[62],"chi(2)-test":[67],"or":[68],"Fisher's":[69],"exact":[70],"test":[71],"used":[73],"to":[74],"evaluate":[75],"statistical":[77],"significance":[78],"every":[80,83],"symbol":[81],"only":[86],"those":[87],"highlighted":[92],"resulting":[95],"logo.":[96],"perl":[98],"source":[99],"code":[100],"program":[103],"freely":[105],"available":[106],"can":[108],"run":[110],"locally.":[111],"AVAILABILITY:":[112],"http://acephpx.cropdb.org/blogo/,":[113],"http://www.bioinformatics.org/blogo/.":[114]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}