{"id":"https://openalex.org/W2162632348","doi":"https://doi.org/10.1093/bioinformatics/btn383","title":"Robust and efficient identification of biomarkers by classifying features on graphs","display_name":"Robust and efficient identification of biomarkers by classifying features on graphs","publication_year":2008,"publication_date":"2008-07-24","ids":{"openalex":"https://openalex.org/W2162632348","doi":"https://doi.org/10.1093/bioinformatics/btn383","mag":"2162632348","pmid":"https://pubmed.ncbi.nlm.nih.gov/18653521"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn383","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn383","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/18/2023/49051796/bioinformatics_24_18_2023.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/18/2023/49051796/bioinformatics_24_18_2023.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111542772","display_name":"Tae-Hyun Hwang","orcid":null},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"TaeHyun Hwang","raw_affiliation_strings":["1 Department of Computer Science and Engineering, University of Minnesota, Twin Cities, 2Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, 3Division of Biostatistics, School of Public Health, University of Minnesota, Twin Cities and 4Division of General Thoracic Surgery, Mayo Clinic Cancer Center, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, University of Minnesota, Twin Cities, 2Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, 3Division of Biostatistics, School of Public Health, University of Minnesota, Twin Cities and 4Division of General Thoracic Surgery, Mayo Clinic Cancer Center, Rochester, MN, USA","institution_ids":["https://openalex.org/I130238516","https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007577734","display_name":"Hugues Sicotte","orcid":"https://orcid.org/0000-0002-0304-8515"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hugues Sicotte","raw_affiliation_strings":["1 Department of Computer Science and Engineering, University of Minnesota, Twin Cities, 2Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, 3Division of Biostatistics, School of Public Health, University of Minnesota, Twin Cities and 4Division of General Thoracic Surgery, Mayo Clinic Cancer Center, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, University of Minnesota, Twin Cities, 2Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, 3Division of Biostatistics, School of Public Health, University of Minnesota, Twin Cities and 4Division of General Thoracic Surgery, Mayo Clinic Cancer Center, Rochester, MN, USA","institution_ids":["https://openalex.org/I130238516","https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111949968","display_name":"Ze Tian","orcid":"https://orcid.org/0009-0005-6552-0327"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ze Tian","raw_affiliation_strings":["1 Department of Computer Science and Engineering, University of Minnesota, Twin Cities, 2Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, 3Division of Biostatistics, School of Public Health, University of Minnesota, Twin Cities and 4Division of General Thoracic Surgery, Mayo Clinic Cancer Center, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, University of Minnesota, Twin Cities, 2Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, 3Division of Biostatistics, School of Public Health, University of Minnesota, Twin Cities and 4Division of General Thoracic Surgery, Mayo Clinic Cancer Center, Rochester, MN, USA","institution_ids":["https://openalex.org/I130238516","https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029703168","display_name":"Baolin Wu","orcid":"https://orcid.org/0000-0001-6676-0422"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Baolin Wu","raw_affiliation_strings":["1 Department of Computer Science and Engineering, University of Minnesota, Twin Cities, 2Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, 3Division of Biostatistics, School of Public Health, University of Minnesota, Twin Cities and 4Division of General Thoracic Surgery, Mayo Clinic Cancer Center, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, University of Minnesota, Twin Cities, 2Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, 3Division of Biostatistics, School of Public Health, University of Minnesota, Twin Cities and 4Division of General Thoracic Surgery, Mayo Clinic Cancer Center, Rochester, MN, USA","institution_ids":["https://openalex.org/I130238516","https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047610028","display_name":"Jean-Pierre Kocher","orcid":null},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jean-Pierre Kocher","raw_affiliation_strings":["1 Department of Computer Science and Engineering, University of Minnesota, Twin Cities, 2Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, 3Division of Biostatistics, School of Public Health, University of Minnesota, Twin Cities and 4Division of General Thoracic Surgery, Mayo Clinic Cancer Center, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, University of Minnesota, Twin Cities, 2Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, 3Division of Biostatistics, School of Public Health, University of Minnesota, Twin Cities and 4Division of General Thoracic Surgery, Mayo Clinic Cancer Center, Rochester, MN, USA","institution_ids":["https://openalex.org/I130238516","https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070955874","display_name":"Dennis A. Wigle","orcid":"https://orcid.org/0000-0003-2407-1340"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dennis A. Wigle","raw_affiliation_strings":["1 Department of Computer Science and Engineering, University of Minnesota, Twin Cities, 2Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, 3Division of Biostatistics, School of Public Health, University of Minnesota, Twin Cities and 4Division of General Thoracic Surgery, Mayo Clinic Cancer Center, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, University of Minnesota, Twin Cities, 2Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, 3Division of Biostatistics, School of Public Health, University of Minnesota, Twin Cities and 4Division of General Thoracic Surgery, Mayo Clinic Cancer Center, Rochester, MN, USA","institution_ids":["https://openalex.org/I130238516","https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100645812","display_name":"Vipin Kumar","orcid":"https://orcid.org/0000-0002-9040-2665"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vipin Kumar","raw_affiliation_strings":["1 Department of Computer Science and Engineering, University of Minnesota, Twin Cities, 2Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, 3Division of Biostatistics, School of Public Health, University of Minnesota, Twin Cities and 4Division of General Thoracic Surgery, Mayo Clinic Cancer Center, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, University of Minnesota, Twin Cities, 2Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, 3Division of Biostatistics, School of Public Health, University of Minnesota, Twin Cities and 4Division of General Thoracic Surgery, Mayo Clinic Cancer Center, Rochester, MN, USA","institution_ids":["https://openalex.org/I130238516","https://openalex.org/I1330342723"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066338313","display_name":"Rui Kuang","orcid":"https://orcid.org/0000-0002-4916-903X"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rui Kuang","raw_affiliation_strings":["1 Department of Computer Science and Engineering, University of Minnesota, Twin Cities, 2Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, 3Division of Biostatistics, School of Public Health, University of Minnesota, Twin Cities and 4Division of General Thoracic Surgery, Mayo Clinic Cancer Center, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, University of Minnesota, Twin Cities, 2Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, 3Division of Biostatistics, School of Public Health, University of Minnesota, Twin Cities and 4Division of General Thoracic Surgery, Mayo Clinic Cancer Center, Rochester, MN, USA","institution_ids":["https://openalex.org/I130238516","https://openalex.org/I1330342723"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5066338313"],"corresponding_institution_ids":["https://openalex.org/I130238516","https://openalex.org/I1330342723"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.4295,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.81134424,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"24","issue":"18","first_page":"2023","last_page":"2029"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.7940000295639038,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.7940000295639038,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.17170000076293945,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.004999999888241291,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6279454231262207},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.6251751184463501},{"id":"https://openalex.org/keywords/bipartite-graph","display_name":"Bipartite graph","score":0.5532981157302856},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.46592140197753906},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4506906270980835},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4355209767818451},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.41965073347091675},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39548569917678833},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3938905894756317},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.38631367683410645},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32152971625328064},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15775281190872192},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.13412964344024658},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.130805104970932},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.089729905128479},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08685833215713501}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6279454231262207},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.6251751184463501},{"id":"https://openalex.org/C197657726","wikidata":"https://www.wikidata.org/wiki/Q174733","display_name":"Bipartite graph","level":3,"score":0.5532981157302856},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.46592140197753906},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4506906270980835},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4355209767818451},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.41965073347091675},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39548569917678833},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3938905894756317},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.38631367683410645},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32152971625328064},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15775281190872192},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.13412964344024658},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.130805104970932},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.089729905128479},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08685833215713501},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btn383","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn383","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/18/2023/49051796/bioinformatics_24_18_2023.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18653521","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18653521","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn383","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn383","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/18/2023/49051796/bioinformatics_24_18_2023.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7099999785423279,"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2162632348.pdf"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1479807131","https://openalex.org/W1493217831","https://openalex.org/W1537662695","https://openalex.org/W2034269086","https://openalex.org/W2072405546","https://openalex.org/W2084787613","https://openalex.org/W2117526678","https://openalex.org/W2124975275","https://openalex.org/W2128985829","https://openalex.org/W2130338776","https://openalex.org/W2133075481","https://openalex.org/W2138312771","https://openalex.org/W2141407136","https://openalex.org/W2148603752","https://openalex.org/W2149255331","https://openalex.org/W2154455818","https://openalex.org/W2154947819","https://openalex.org/W2160450758","https://openalex.org/W2163563958","https://openalex.org/W2165776880","https://openalex.org/W2167769381","https://openalex.org/W2612972698","https://openalex.org/W2913766202","https://openalex.org/W3151142710","https://openalex.org/W6629329278","https://openalex.org/W6680991062","https://openalex.org/W6682494755"],"related_works":["https://openalex.org/W2965546495","https://openalex.org/W4389116644","https://openalex.org/W2153315159","https://openalex.org/W3103844505","https://openalex.org/W259157601","https://openalex.org/W4205463238","https://openalex.org/W2371352078","https://openalex.org/W2761785940","https://openalex.org/W2953461625","https://openalex.org/W2110523656"],"abstract_inverted_index":{"MOTIVATION:":[0],"A":[1],"central":[2],"problem":[3],"in":[4,69,98],"biomarker":[5,155],"discovery":[6],"from":[7,157,234],"large-scale":[8,192],"gene":[9,159],"expression":[10,160],"or":[11,76,133,215],"single":[12],"nucleotide":[13],"polymorphism":[14],"(SNP)":[15],"data":[16,251],"is":[17,140,151],"the":[18,25,29,34,66,83,118,122,185,219,235],"computational":[19],"challenge":[20],"of":[21,103,142,145,147],"taking":[22],"into":[23],"account":[24],"dependence":[26,35,84,119],"among":[27,85,120],"all":[28,121],"features.":[30],"Methods":[31],"that":[32],"ignore":[33],"usually":[36],"identify":[37,53],"non-reproducible":[38],"biomarkers":[39],"across":[40,130],"independent":[41,131,236],"datasets.":[42,195,237],"We":[43,183],"introduce":[44],"a":[45,70,99,112],"new":[46],"graph-based":[47],"semi-supervised":[48],"feature":[49,67],"classification":[50,200],"algorithm":[51,63,105,109,139,172,188,197,224],"to":[52,81,116,189],"discriminative":[54],"disease":[55,180],"markers":[56,212],"by":[57,94],"learning":[58],"on":[59],"bipartite":[60,71],"graphs.":[61],"Our":[62,196],"directly":[64],"classifies":[65],"nodes":[68],"graph":[72],"as":[73],"positive,":[74],"negative":[75],"neutral":[77],"with":[78,203,213,218],"network":[79,186],"propagation":[80,187],"capture":[82,117],"both":[86],"samples":[87,178],"and":[88,91,124,149,161,205,209,231,241],"features":[89,102,123,148],"(clinical":[90],"genetic":[92],"variables)":[93],"exploring":[95],"bi-cluster":[96],"structures":[97],"graph.":[100],"Two":[101],"our":[104,108,138,171,223],"are:":[106],"(1)":[107],"can":[110,173],"find":[111],"global":[113],"optimal":[114],"labeling":[115],"thus,":[125,150],"generates":[126],"highly":[127,227],"reproducible":[128,228],"results":[129,240],"microarray":[132],"other":[134,206],"high-thoughput":[135],"datasets,":[136],"(2)":[137],"capable":[141],"handling":[143],"hundreds":[144],"thousands":[146],"particularly":[152],"useful":[153],"for":[154,168,179],"identification":[156],"high-throughput":[158],"SNP":[162],"data.":[163],"In":[164],"addition,":[165],"although":[166],"designed":[167],"classifying":[169],"features,":[170],"also":[174,225],"simultaneously":[175],"classify":[176],"test":[177],"prognosis/diagnosis.":[181],"RESULTS:":[182],"applied":[184],"study":[190],"three":[191],"breast":[193],"cancer":[194],"achieved":[198],"competitive":[199],"performance":[201],"compared":[202],"SVMs":[204],"baseline":[207],"methods,":[208],"identified":[210,226],"several":[211],"clinical":[214],"biological":[216],"relevance":[217],"disease.":[220],"More":[221],"importantly,":[222],"marker":[229],"genes":[230],"enriched":[232],"functions":[233],"AVAILABILITY:":[238],"Supplementary":[239,250],"source":[242],"code":[243],"are":[244,252],"available":[245,253],"at":[246,254],"http://compbio.cs.umn.edu/Feature_Class.":[247],"SUPPLEMENTARY":[248],"INFORMATION:":[249],"Bioinformatics":[255],"online.":[256]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":7}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
