{"id":"https://openalex.org/W2151043202","doi":"https://doi.org/10.1093/bioinformatics/btn371","title":"MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence","display_name":"MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence","publication_year":2008,"publication_date":"2008-07-16","ids":{"openalex":"https://openalex.org/W2151043202","doi":"https://doi.org/10.1093/bioinformatics/btn371","mag":"2151043202","pmid":"https://pubmed.ncbi.nlm.nih.gov/18635571"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn371","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn371","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/18/2094/49051651/bioinformatics_24_18_2094.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/18/2094/49051651/bioinformatics_24_18_2094.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062424045","display_name":"Marco Lippi","orcid":"https://orcid.org/0000-0002-9663-1071"},"institutions":[{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Lippi","raw_affiliation_strings":["1 Machine Learning and Neural Networks Group, Dipartimento di Sistemi e Informatica, Universit\u00e0 degli Studi di Firenze, Via di Santa Marta 3, 50139 Firenze, Italy, 2Department of Biochemistry and Molecular Biophysics, Columbia University, 630 West 168th Street, 3Columbia University Center for Computational Biology and Bioinformatics (C2B2), 1130 St Nicholas Ave. and 4Northeast Structural Genomics Consortium (NESG), Columbia University, 1130 St Nicholas Ave. Rm. 802, New York, NY 10032, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Machine Learning and Neural Networks Group, Dipartimento di Sistemi e Informatica, Universit\u00e0 degli Studi di Firenze, Via di Santa Marta 3, 50139 Firenze, Italy, 2Department of Biochemistry and Molecular Biophysics, Columbia University, 630 West 168th Street, 3Columbia University Center for Computational Biology and Bioinformatics (C2B2), 1130 St Nicholas Ave. and 4Northeast Structural Genomics Consortium (NESG), Columbia University, 1130 St Nicholas Ave. Rm. 802, New York, NY 10032, USA","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066187890","display_name":"Andrea Passerini","orcid":"https://orcid.org/0000-0002-2765-5395"},"institutions":[{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Passerini","raw_affiliation_strings":["1 Machine Learning and Neural Networks Group, Dipartimento di Sistemi e Informatica, Universit\u00e0 degli Studi di Firenze, Via di Santa Marta 3, 50139 Firenze, Italy, 2Department of Biochemistry and Molecular Biophysics, Columbia University, 630 West 168th Street, 3Columbia University Center for Computational Biology and Bioinformatics (C2B2), 1130 St Nicholas Ave. and 4Northeast Structural Genomics Consortium (NESG), Columbia University, 1130 St Nicholas Ave. Rm. 802, New York, NY 10032, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Machine Learning and Neural Networks Group, Dipartimento di Sistemi e Informatica, Universit\u00e0 degli Studi di Firenze, Via di Santa Marta 3, 50139 Firenze, Italy, 2Department of Biochemistry and Molecular Biophysics, Columbia University, 630 West 168th Street, 3Columbia University Center for Computational Biology and Bioinformatics (C2B2), 1130 St Nicholas Ave. and 4Northeast Structural Genomics Consortium (NESG), Columbia University, 1130 St Nicholas Ave. Rm. 802, New York, NY 10032, USA","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056369160","display_name":"Marco Punta","orcid":"https://orcid.org/0000-0002-0050-0676"},"institutions":[{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Punta","raw_affiliation_strings":["1 Machine Learning and Neural Networks Group, Dipartimento di Sistemi e Informatica, Universit\u00e0 degli Studi di Firenze, Via di Santa Marta 3, 50139 Firenze, Italy, 2Department of Biochemistry and Molecular Biophysics, Columbia University, 630 West 168th Street, 3Columbia University Center for Computational Biology and Bioinformatics (C2B2), 1130 St Nicholas Ave. and 4Northeast Structural Genomics Consortium (NESG), Columbia University, 1130 St Nicholas Ave. Rm. 802, New York, NY 10032, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Machine Learning and Neural Networks Group, Dipartimento di Sistemi e Informatica, Universit\u00e0 degli Studi di Firenze, Via di Santa Marta 3, 50139 Firenze, Italy, 2Department of Biochemistry and Molecular Biophysics, Columbia University, 630 West 168th Street, 3Columbia University Center for Computational Biology and Bioinformatics (C2B2), 1130 St Nicholas Ave. and 4Northeast Structural Genomics Consortium (NESG), Columbia University, 1130 St Nicholas Ave. Rm. 802, New York, NY 10032, USA","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064905883","display_name":"Burkhard Rost","orcid":"https://orcid.org/0000-0003-0179-8424"},"institutions":[{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Burkhard Rost","raw_affiliation_strings":["1 Machine Learning and Neural Networks Group, Dipartimento di Sistemi e Informatica, Universit\u00e0 degli Studi di Firenze, Via di Santa Marta 3, 50139 Firenze, Italy, 2Department of Biochemistry and Molecular Biophysics, Columbia University, 630 West 168th Street, 3Columbia University Center for Computational Biology and Bioinformatics (C2B2), 1130 St Nicholas Ave. and 4Northeast Structural Genomics Consortium (NESG), Columbia University, 1130 St Nicholas Ave. Rm. 802, New York, NY 10032, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Machine Learning and Neural Networks Group, Dipartimento di Sistemi e Informatica, Universit\u00e0 degli Studi di Firenze, Via di Santa Marta 3, 50139 Firenze, Italy, 2Department of Biochemistry and Molecular Biophysics, Columbia University, 630 West 168th Street, 3Columbia University Center for Computational Biology and Bioinformatics (C2B2), 1130 St Nicholas Ave. and 4Northeast Structural Genomics Consortium (NESG), Columbia University, 1130 St Nicholas Ave. Rm. 802, New York, NY 10032, USA","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027422071","display_name":"Paolo Frasconi","orcid":"https://orcid.org/0000-0003-3117-9245"},"institutions":[{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Paolo Frasconi","raw_affiliation_strings":["1 Machine Learning and Neural Networks Group, Dipartimento di Sistemi e Informatica, Universit\u00e0 degli Studi di Firenze, Via di Santa Marta 3, 50139 Firenze, Italy, 2Department of Biochemistry and Molecular Biophysics, Columbia University, 630 West 168th Street, 3Columbia University Center for Computational Biology and Bioinformatics (C2B2), 1130 St Nicholas Ave. and 4Northeast Structural Genomics Consortium (NESG), Columbia University, 1130 St Nicholas Ave. Rm. 802, New York, NY 10032, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Machine Learning and Neural Networks Group, Dipartimento di Sistemi e Informatica, Universit\u00e0 degli Studi di Firenze, Via di Santa Marta 3, 50139 Firenze, Italy, 2Department of Biochemistry and Molecular Biophysics, Columbia University, 630 West 168th Street, 3Columbia University Center for Computational Biology and Bioinformatics (C2B2), 1130 St Nicholas Ave. and 4Northeast Structural Genomics Consortium (NESG), Columbia University, 1130 St Nicholas Ave. Rm. 802, New York, NY 10032, USA","institution_ids":["https://openalex.org/I45084792"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5027422071"],"corresponding_institution_ids":["https://openalex.org/I45084792"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.0561,"has_fulltext":true,"cited_by_count":60,"citation_normalized_percentile":{"value":0.9184736,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"24","issue":"18","first_page":"2094","last_page":"2095"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.3154999911785126,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.3154999911785126,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.22750000655651093,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.15839999914169312,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/disulfide-bond","display_name":"Disulfide bond","score":0.6632962822914124},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6345366835594177},{"id":"https://openalex.org/keywords/histidine","display_name":"Histidine","score":0.5780192613601685},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.48311662673950195},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47889819741249084},{"id":"https://openalex.org/keywords/metal","display_name":"Metal","score":0.47377896308898926},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4637959599494934},{"id":"https://openalex.org/keywords/web-site","display_name":"Web site","score":0.43590646982192993},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4273703694343567},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.1960730254650116},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1953769028186798},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.18021723628044128},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.11420443654060364},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.09813296794891357}],"concepts":[{"id":"https://openalex.org/C27256138","wikidata":"https://www.wikidata.org/wiki/Q1230226","display_name":"Disulfide bond","level":2,"score":0.6632962822914124},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6345366835594177},{"id":"https://openalex.org/C2778460671","wikidata":"https://www.wikidata.org/wiki/Q485277","display_name":"Histidine","level":3,"score":0.5780192613601685},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.48311662673950195},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47889819741249084},{"id":"https://openalex.org/C544153396","wikidata":"https://www.wikidata.org/wiki/Q11426","display_name":"Metal","level":2,"score":0.47377896308898926},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4637959599494934},{"id":"https://openalex.org/C2984519610","wikidata":"https://www.wikidata.org/wiki/Q35127","display_name":"Web site","level":3,"score":0.43590646982192993},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4273703694343567},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.1960730254650116},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1953769028186798},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.18021723628044128},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.11420443654060364},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.09813296794891357},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003545","descriptor_name":"Cysteine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003545","descriptor_name":"Cysteine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003545","descriptor_name":"Cysteine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004220","descriptor_name":"Disulfides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004220","descriptor_name":"Disulfides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004220","descriptor_name":"Disulfides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004220","descriptor_name":"Disulfides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004220","descriptor_name":"Disulfides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004220","descriptor_name":"Disulfides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006639","descriptor_name":"Histidine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006639","descriptor_name":"Histidine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006639","descriptor_name":"Histidine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008667","descriptor_name":"Metalloproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008667","descriptor_name":"Metalloproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008667","descriptor_name":"Metalloproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008667","descriptor_name":"Metalloproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008667","descriptor_name":"Metalloproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008667","descriptor_name":"Metalloproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btn371","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn371","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/18/2094/49051651/bioinformatics_24_18_2094.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18635571","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18635571","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:cris.unibo.it:11585/394757","is_oa":false,"landing_page_url":"http://hdl.handle.net/11585/394757","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:flore.unifi.it:2158/386612","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btn371","pdf_url":null,"source":{"id":"https://openalex.org/S4306402033","display_name":"Florence Research (University of Florence)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45084792","host_organization_name":"University of Florence","host_organization_lineage":["https://openalex.org/I45084792"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:iris.unimore.it:11380/1122678","is_oa":true,"landing_page_url":"http://hdl.handle.net/11380/1122678","pdf_url":null,"source":{"id":"https://openalex.org/S4306400718","display_name":"IRIS UNIMORE (University of Modena and Reggio Emilia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122346577","host_organization_name":"University of Modena and Reggio Emilia","host_organization_lineage":["https://openalex.org/I122346577"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:iris.unitn.it:11572/22333","is_oa":false,"landing_page_url":"http://hdl.handle.net/11572/22333","pdf_url":null,"source":{"id":"https://openalex.org/S4377196320","display_name":"Iris (University of Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2732205","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2732205","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn371","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn371","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/18/2094/49051651/bioinformatics_24_18_2094.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1070260364","display_name":null,"funder_award_id":"R01 LM007329","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G1962546022","display_name":null,"funder_award_id":"R01-GM079767","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G459958035","display_name":null,"funder_award_id":"U54 GM075026","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4851460939","display_name":null,"funder_award_id":"R01-LM07329","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G5090702647","display_name":null,"funder_award_id":"R01 GM079767","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7175996036","display_name":null,"funder_award_id":"U54-GM75026","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8792241200","display_name":null,"funder_award_id":"R01-LM07329","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2151043202.pdf","grobid_xml":"https://content.openalex.org/works/W2151043202.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W1517283793","https://openalex.org/W1984252868","https://openalex.org/W2026329770","https://openalex.org/W2066376157","https://openalex.org/W2109681606","https://openalex.org/W2133997592","https://openalex.org/W2159128192"],"related_works":["https://openalex.org/W2049444949","https://openalex.org/W1976691753","https://openalex.org/W1992238839","https://openalex.org/W1971868198","https://openalex.org/W2315077108","https://openalex.org/W1607531474","https://openalex.org/W1643731254","https://openalex.org/W2317280338","https://openalex.org/W4387264413","https://openalex.org/W2148081044"],"abstract_inverted_index":{"UNLABELLED:":[0],"The":[1],"web":[2],"server":[3,53],"MetalDetector":[4],"classifies":[5],"histidine":[6],"residues":[7],"in":[8,70],"proteins":[9],"into":[10,21],"one":[11,22],"of":[12,23],"two":[13,38],"states":[14,25],"(free":[15],"or":[16,29],"metal":[17,27],"bound)":[18],"and":[19,43,61,68,77,80,84,96],"cysteines":[20,67],"three":[24],"(free,":[26],"bound":[28],"disulfide":[30,55],"bridged).":[31],"A":[32],"decision":[33],"tree":[34],"integrates":[35],"predictions":[36],"from":[37],"previously":[39],"developed":[40],"methods":[41],"(DISULFIND":[42],"Metal":[44],"Ligand":[45],"Predictor).":[46],"Cross-validated":[47],"performance":[48],"assessment":[49],"indicates":[50],"that":[51],"our":[52],"predicts":[54],"bonding":[56],"state":[57],"at":[58,74,81,91,101],"88.6%":[59],"precision":[60,76,83],"85.1%":[62],"recall,":[63,79,86],"while":[64],"it":[65],"identifies":[66],"histidines":[69],"transition":[71],"metal-binding":[72],"sites":[73],"79.9%":[75],"76.8%":[78],"60.8%":[82],"40.7%":[85],"respectively.":[87],"AVAILABILITY:":[88],"Freely":[89],"available":[90],"http://metaldetector.dsi.unifi.it.":[92],"SUPPLEMENTARY":[93],"INFORMATION:":[94],"Details":[95],"data":[97],"can":[98],"be":[99],"found":[100],"http://metaldetector.dsi.unifi.it/help.php.":[102]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":7}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
