{"id":"https://openalex.org/W2098943145","doi":"https://doi.org/10.1093/bioinformatics/btn364","title":"EPoS: a modular software framework for phylogenetic analysis","display_name":"EPoS: a modular software framework for phylogenetic analysis","publication_year":2008,"publication_date":"2008-07-16","ids":{"openalex":"https://openalex.org/W2098943145","doi":"https://doi.org/10.1093/bioinformatics/btn364","mag":"2098943145","pmid":"https://pubmed.ncbi.nlm.nih.gov/18632748"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn364","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn364","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089996702","display_name":"Thasso Griebel","orcid":null},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Thasso Griebel","raw_affiliation_strings":["Faculty of Mathematics and Computer Science, Friedrich-Schiller-University Jena, 07743 Jena, Germany","Faculty of Mathematics and Computer Science, Friedrich Schiller University Jena, 07743 Jena, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, Friedrich-Schiller-University Jena, 07743 Jena, Germany","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, Friedrich Schiller University Jena, 07743 Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027396780","display_name":"Malte Brinkmeyer","orcid":null},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Malte Brinkmeyer","raw_affiliation_strings":["Faculty of Mathematics and Computer Science, Friedrich-Schiller-University Jena, 07743 Jena, Germany","Faculty of Mathematics and Computer Science, Friedrich Schiller University Jena, 07743 Jena, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, Friedrich-Schiller-University Jena, 07743 Jena, Germany","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, Friedrich Schiller University Jena, 07743 Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033025664","display_name":"Sebastian B\u00f6cker","orcid":"https://orcid.org/0000-0002-9304-8091"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sebastian B\u00f6cker","raw_affiliation_strings":["Faculty of Mathematics and Computer Science, Friedrich-Schiller-University Jena, 07743 Jena, Germany","Faculty of Mathematics and Computer Science, Friedrich Schiller University Jena, 07743 Jena, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, Friedrich-Schiller-University Jena, 07743 Jena, Germany","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, Friedrich Schiller University Jena, 07743 Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5089996702"],"corresponding_institution_ids":["https://openalex.org/I76198965"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5557,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.67666671,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"24","issue":"20","first_page":"2399","last_page":"2400"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10487","display_name":"Plant and animal studies","score":0.9681000113487244,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.9678999781608582,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7172720432281494},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.7052244544029236},{"id":"https://openalex.org/keywords/supertree","display_name":"Supertree","score":0.702772319316864},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6431112885475159},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6370501518249512},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.6257932186126709},{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.5583382844924927},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.49875426292419434},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4578626751899719},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.45140987634658813},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4215574264526367},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.41835713386535645},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41086453199386597},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.41046684980392456},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2516164779663086},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1747761368751526},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0893591046333313},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08911284804344177}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7172720432281494},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.7052244544029236},{"id":"https://openalex.org/C55919133","wikidata":"https://www.wikidata.org/wiki/Q7644297","display_name":"Supertree","level":4,"score":0.702772319316864},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6431112885475159},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6370501518249512},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.6257932186126709},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.5583382844924927},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.49875426292419434},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4578626751899719},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.45140987634658813},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4215574264526367},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.41835713386535645},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41086453199386597},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.41046684980392456},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2516164779663086},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1747761368751526},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0893591046333313},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08911284804344177},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btn364","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn364","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18632748","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18632748","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W6308877","https://openalex.org/W1563401818","https://openalex.org/W2033854905","https://openalex.org/W2074494141","https://openalex.org/W2078109763","https://openalex.org/W2097706568","https://openalex.org/W2108859064","https://openalex.org/W4255938757","https://openalex.org/W6674647444"],"related_works":["https://openalex.org/W2040811618","https://openalex.org/W4212802173","https://openalex.org/W1981037505","https://openalex.org/W4250071703","https://openalex.org/W2053118947","https://openalex.org/W2732875821","https://openalex.org/W4256402898","https://openalex.org/W4242614412","https://openalex.org/W2533812722","https://openalex.org/W3090813340"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"Estimating":[2],"Phylogenies":[3],"of":[4,52,59],"Species":[5],"(EPoS)":[6],"is":[7],"a":[8,21,26,29,50,57],"modular":[9],"software":[10],"framework":[11],"for":[12,114],"phylogenetic":[13,54],"analysis,":[14],"visualization":[15,61],"and":[16,33,42,56,63,73,88,93,112,117,124],"data":[17,48],"management.":[18],"It":[19],"provides":[20],"plugin-based":[22],"system":[23,80],"that":[24],"integrates":[25],"storage":[27],"facility,":[28],"rich":[30],"user":[31],"interface":[32],"the":[34,99],"ability":[35],"to":[36,121],"easily":[37],"incorporate":[38],"new":[39],"methods,":[40],"functions":[41],"visualizations.":[43],"EPoS":[44],"ships":[45],"with":[46],"persistent":[47],"management,":[49],"set":[51],"well-known":[53],"algorithms":[55,66],"multitude":[58],"tree":[60,69],"methods":[62],"layouts.":[64],"Implemented":[65],"cover":[67],"distance-based":[68],"construction,":[70],"consensus":[71],"trees":[72],"various":[74],"graph-based":[75],"supertree":[76],"methods.":[77],"The":[78,108],"rendering":[79],"can":[81],"be":[82],"customized":[83],"for,":[84],"say,":[85],"different":[86],"edge":[87],"node":[89],"styles.":[90],"Availability:":[91],"Executables":[92],"source":[94],"code":[95],"are":[96],"available":[97],"under":[98],"LGPL":[100],"license":[101],"at":[102],"http://www.bio.informatik.uni-jena.de/epos.":[103],"Contact:":[104],"thasso@minet.uni-jena.de":[105],"Supplementary":[106],"information:":[107],"homepage":[109],"contains":[110],"tutorials":[111],"documentation":[113],"both":[115],"users":[116],"programmers":[118],"who":[119],"want":[120],"develop":[122],"plugins":[123],"extensions.":[125]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":7}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
