{"id":"https://openalex.org/W2147901668","doi":"https://doi.org/10.1093/bioinformatics/btn325","title":"BioMAJ: a flexible framework for databanks synchronization and processing","display_name":"BioMAJ: a flexible framework for databanks synchronization and processing","publication_year":2008,"publication_date":"2008-06-30","ids":{"openalex":"https://openalex.org/W2147901668","doi":"https://doi.org/10.1093/bioinformatics/btn325","mag":"2147901668","pmid":"https://pubmed.ncbi.nlm.nih.gov/18593718"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn325","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn325","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/16/1823/522105/btn325.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/16/1823/522105/btn325.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053548847","display_name":"Olivier Filangi","orcid":"https://orcid.org/0000-0002-2094-3271"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Filangi","raw_affiliation_strings":["1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I2802519937","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025397442","display_name":"Yoann Beausse","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Yoann Beausse","raw_affiliation_strings":["1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I2802519937","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075895026","display_name":"Anthony Assi","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anthony Assi","raw_affiliation_strings":["1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I2802519937","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079360085","display_name":"Ludovic Legrand","orcid":"https://orcid.org/0000-0001-9634-709X"},"institutions":[{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ludovic Legrand","raw_affiliation_strings":["1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I2802519937","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052189545","display_name":"Jean-Marc Larr\u00e9","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Marc Larr\u00e9","raw_affiliation_strings":["1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I2802519937","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017037445","display_name":"V\u00e9ronique Martin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"V\u00e9ronique Martin","raw_affiliation_strings":["1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I2802519937","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064301488","display_name":"Olivier Collin","orcid":"https://orcid.org/0000-0002-8959-8402"},"institutions":[{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Collin","raw_affiliation_strings":["1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I2802519937","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060347167","display_name":"Christophe Caron","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christophe Caron","raw_affiliation_strings":["1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I2802519937","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086342124","display_name":"Hugues Leroy","orcid":null},"institutions":[{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Hugues Leroy","raw_affiliation_strings":["1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I2802519937","https://openalex.org/I1326498283"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020658046","display_name":"David Allouche","orcid":"https://orcid.org/0000-0003-3549-4592"},"institutions":[{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"David Allouche","raw_affiliation_strings":["1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"1 IRISA/INRIA, Symbiose Project, 2Unit\u00e9 de Biom\u00e9trie et Intelligence Artificielle, UR875, INRA, F-31320 Castanet-Tolosan and 3INRA Unit\u00e9 Math\u00e9matique Informatique et G\u00e9nome, UR1077, INRA, F-78350 Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I2802519937","https://openalex.org/I1326498283"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5020658046"],"corresponding_institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I2802519937","https://openalex.org/I4210159481"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.7586,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.92245377,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"24","issue":"16","first_page":"1823","last_page":"1825"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8267619609832764},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8025577664375305},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.7204656600952148},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.6676756143569946},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6393796801567078},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5940748453140259},{"id":"https://openalex.org/keywords/automation","display_name":"Automation","score":0.5839118361473083},{"id":"https://openalex.org/keywords/synchronization","display_name":"Synchronization (alternating current)","score":0.5712096095085144},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5292930603027344},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5128495693206787},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4633064866065979},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4555484354496002},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37234339118003845},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3248324692249298},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2378605604171753},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2193383276462555}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8267619609832764},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8025577664375305},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.7204656600952148},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.6676756143569946},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6393796801567078},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5940748453140259},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.5839118361473083},{"id":"https://openalex.org/C2778562939","wikidata":"https://www.wikidata.org/wiki/Q1298791","display_name":"Synchronization (alternating current)","level":3,"score":0.5712096095085144},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5292930603027344},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5128495693206787},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4633064866065979},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4555484354496002},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37234339118003845},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3248324692249298},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2378605604171753},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2193383276462555},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127162648","wikidata":"https://www.wikidata.org/wiki/Q16858953","display_name":"Channel (broadcasting)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btn325","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn325","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/16/1823/522105/btn325.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18593718","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18593718","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:inria-00327502v1","is_oa":false,"landing_page_url":"https://inria.hal.science/inria-00327502","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/24/16/1823.full","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:2303722","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3293366","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn325","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn325","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/16/1823/522105/btn325.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.5199999809265137,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320313934","display_name":"Institut national de recherche en informatique et en automatique (INRIA)","ror":"https://ror.org/02kvxyf05"},{"id":"https://openalex.org/F4320323910","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/01x3gbx83"},{"id":"https://openalex.org/F4320327215","display_name":"R\u00e9gion Bretagne","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2147901668.pdf","grobid_xml":"https://content.openalex.org/works/W2147901668.grobid-xml"},"referenced_works_count":3,"referenced_works":["https://openalex.org/W1730348256","https://openalex.org/W2130737801","https://openalex.org/W2168103533"],"related_works":["https://openalex.org/W2046765700","https://openalex.org/W1981780420","https://openalex.org/W262455470","https://openalex.org/W2182707996","https://openalex.org/W4242899858","https://openalex.org/W4384345686","https://openalex.org/W2145834781","https://openalex.org/W2951541096","https://openalex.org/W2790902885","https://openalex.org/W3125106243"],"abstract_inverted_index":{"http://biomaj.genouest.org.":[0],"BioMAJ":[1],"is":[2,7],"free":[3],"open":[4],"software.":[5],"It":[6],"freely":[8],"available":[9],"under":[10],"the":[11],"CECILL":[12],"version":[13],"2":[14],"license.":[15]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
