{"id":"https://openalex.org/W2101265630","doi":"https://doi.org/10.1093/bioinformatics/btn299","title":"Inter-species normalization of gene mentions with GNAT","display_name":"Inter-species normalization of gene mentions with GNAT","publication_year":2008,"publication_date":"2008-08-09","ids":{"openalex":"https://openalex.org/W2101265630","doi":"https://doi.org/10.1093/bioinformatics/btn299","mag":"2101265630","pmid":"https://pubmed.ncbi.nlm.nih.gov/18689813"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn299","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn299","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/16/i126/49051402/bioinformatics_24_16_i126.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/16/i126/49051402/bioinformatics_24_16_i126.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034893893","display_name":"J\u00f6rg Hakenberg","orcid":"https://orcid.org/0000-0001-8781-7766"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"J\u00f6rg Hakenberg","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85287, USA, 2Biotechnological Centre, Technische Universit\u00e4t Dresden, Tatzberg 47\u201351, 01307 Dresden, 3Transinsight GmbH, Tatzberg 47\u201351, 01307 Dresden, Germany and 4Department of Biomedical Informatics, Arizona State University, Phoenix, AZ 85004, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85287, USA, 2Biotechnological Centre, Technische Universit\u00e4t Dresden, Tatzberg 47\u201351, 01307 Dresden, 3Transinsight GmbH, Tatzberg 47\u201351, 01307 Dresden, Germany and 4Department of Biomedical Informatics, Arizona State University, Phoenix, AZ 85004, USA","institution_ids":["https://openalex.org/I55732556","https://openalex.org/I78650965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078605382","display_name":"Conrad Plake","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Conrad Plake","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85287, USA, 2Biotechnological Centre, Technische Universit\u00e4t Dresden, Tatzberg 47\u201351, 01307 Dresden, 3Transinsight GmbH, Tatzberg 47\u201351, 01307 Dresden, Germany and 4Department of Biomedical Informatics, Arizona State University, Phoenix, AZ 85004, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85287, USA, 2Biotechnological Centre, Technische Universit\u00e4t Dresden, Tatzberg 47\u201351, 01307 Dresden, 3Transinsight GmbH, Tatzberg 47\u201351, 01307 Dresden, Germany and 4Department of Biomedical Informatics, Arizona State University, Phoenix, AZ 85004, USA","institution_ids":["https://openalex.org/I55732556","https://openalex.org/I78650965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044947146","display_name":"Robert Leaman","orcid":"https://orcid.org/0000-0003-3296-5766"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Robert Leaman","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85287, USA, 2Biotechnological Centre, Technische Universit\u00e4t Dresden, Tatzberg 47\u201351, 01307 Dresden, 3Transinsight GmbH, Tatzberg 47\u201351, 01307 Dresden, Germany and 4Department of Biomedical Informatics, Arizona State University, Phoenix, AZ 85004, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85287, USA, 2Biotechnological Centre, Technische Universit\u00e4t Dresden, Tatzberg 47\u201351, 01307 Dresden, 3Transinsight GmbH, Tatzberg 47\u201351, 01307 Dresden, Germany and 4Department of Biomedical Informatics, Arizona State University, Phoenix, AZ 85004, USA","institution_ids":["https://openalex.org/I55732556","https://openalex.org/I78650965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016411406","display_name":"Michael Schroeder","orcid":"https://orcid.org/0000-0003-2848-6949"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Michael Schroeder","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85287, USA, 2Biotechnological Centre, Technische Universit\u00e4t Dresden, Tatzberg 47\u201351, 01307 Dresden, 3Transinsight GmbH, Tatzberg 47\u201351, 01307 Dresden, Germany and 4Department of Biomedical Informatics, Arizona State University, Phoenix, AZ 85004, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85287, USA, 2Biotechnological Centre, Technische Universit\u00e4t Dresden, Tatzberg 47\u201351, 01307 Dresden, 3Transinsight GmbH, Tatzberg 47\u201351, 01307 Dresden, Germany and 4Department of Biomedical Informatics, Arizona State University, Phoenix, AZ 85004, USA","institution_ids":["https://openalex.org/I55732556","https://openalex.org/I78650965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022014033","display_name":"Graciela Gonzalez\u2010Hernandez","orcid":"https://orcid.org/0000-0002-6416-9556"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]},{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Graciela Gonzalez","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85287, USA, 2Biotechnological Centre, Technische Universit\u00e4t Dresden, Tatzberg 47\u201351, 01307 Dresden, 3Transinsight GmbH, Tatzberg 47\u201351, 01307 Dresden, Germany and 4Department of Biomedical Informatics, Arizona State University, Phoenix, AZ 85004, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85287, USA, 2Biotechnological Centre, Technische Universit\u00e4t Dresden, Tatzberg 47\u201351, 01307 Dresden, 3Transinsight GmbH, Tatzberg 47\u201351, 01307 Dresden, Germany and 4Department of Biomedical Informatics, Arizona State University, Phoenix, AZ 85004, USA","institution_ids":["https://openalex.org/I55732556","https://openalex.org/I78650965"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5034893893"],"corresponding_institution_ids":["https://openalex.org/I55732556","https://openalex.org/I78650965"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.8779,"has_fulltext":true,"cited_by_count":136,"citation_normalized_percentile":{"value":0.97638478,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"24","issue":"16","first_page":"i126","last_page":"i132"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.0010000000474974513,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.6487047672271729},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.618979275226593},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6068115830421448},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.5323605537414551},{"id":"https://openalex.org/keywords/ambiguity","display_name":"Ambiguity","score":0.4497678577899933},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4247579872608185},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3685908317565918},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3330954909324646},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25177720189094543},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.21754184365272522},{"id":"https://openalex.org/keywords/nomenclature","display_name":"Nomenclature","score":0.10308688879013062},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07473692297935486}],"concepts":[{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.6487047672271729},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.618979275226593},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6068115830421448},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.5323605537414551},{"id":"https://openalex.org/C2780522230","wikidata":"https://www.wikidata.org/wiki/Q1140419","display_name":"Ambiguity","level":2,"score":0.4497678577899933},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4247579872608185},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3685908317565918},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3330954909324646},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25177720189094543},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.21754184365272522},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.10308688879013062},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07473692297935486},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btn299","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn299","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/16/i126/49051402/bioinformatics_24_16_i126.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18689813","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18689813","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn299","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn299","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/16/i126/49051402/bioinformatics_24_16_i126.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309808","display_name":"Science Foundation Arizona","ror":"https://ror.org/05kjhj835"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320332169","display_name":"Directorate for Computer and Information Science and Engineering","ror":"https://ror.org/025kzpk63"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2101265630.pdf","grobid_xml":"https://content.openalex.org/works/W2101265630.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1659833910","https://openalex.org/W1988946940","https://openalex.org/W1991154713","https://openalex.org/W2000862718","https://openalex.org/W2054518234","https://openalex.org/W2061166439","https://openalex.org/W2099369363","https://openalex.org/W2107005506","https://openalex.org/W2120736575","https://openalex.org/W2121343862","https://openalex.org/W2129113459","https://openalex.org/W2132180308","https://openalex.org/W2141869602","https://openalex.org/W2150252713","https://openalex.org/W2168091548","https://openalex.org/W2604823638","https://openalex.org/W3037124152","https://openalex.org/W4285719527","https://openalex.org/W4300022934","https://openalex.org/W6636847367","https://openalex.org/W6648116614","https://openalex.org/W6650854605","https://openalex.org/W6675914680","https://openalex.org/W6696766096"],"related_works":["https://openalex.org/W2353179089","https://openalex.org/W4378651134","https://openalex.org/W2923538289","https://openalex.org/W2353125546","https://openalex.org/W2470643824","https://openalex.org/W1979633005","https://openalex.org/W2349635380","https://openalex.org/W2353819554","https://openalex.org/W2359488321","https://openalex.org/W2951946877"],"abstract_inverted_index":{"MOTIVATION:":[0],"Text":[1],"mining":[2],"in":[3,15,18,60],"the":[4,32,90,121,187,212],"biomedical":[5,110],"domain":[6],"aims":[7],"at":[8,183,204,230],"helping":[9],"researchers":[10],"to":[11,41,46,55,98,128,140,144,150],"access":[12],"information":[13,57,74],"contained":[14,59],"scientific":[16],"publications":[17],"a":[19,61,159],"faster,":[20],"easier":[21],"and":[22,37,80,108,156,166,224],"more":[23],"complete":[24],"way.":[25],"One":[26],"step":[27],"towards":[28],"this":[29],"aim":[30],"is":[31,64,86,202],"recognition":[33],"of":[34,49,93,179,194],"named":[35,105],"entities":[36],"their":[38],"subsequent":[39],"normalization":[40,77,84],"database":[42],"identifiers.":[43,146],"Normalization":[44],"helps":[45],"link":[47],"objects":[48],"potential":[50],"interest,":[51],"such":[52],"as":[53],"genes,":[54,103],"detailed":[56],"not":[58],"publication;":[62],"it":[63],"also":[65,208],"key":[66],"for":[67],"integrating":[68],"different":[69,102],"knowledge":[70,137],"sources.":[71],"From":[72],"an":[73,177,192],"retrieval":[75],"perspective,":[76],"facilitates":[78],"indexing":[79],"querying.":[81],"Gene":[82],"mention":[83],"(GN)":[85],"particularly":[87],"challenging":[88],"given":[89],"high":[91],"ambiguity":[92],"gene":[94],"names:":[95],"they":[96,113],"refer":[97],"orthologous":[99],"or":[100,112],"entirely":[101],"are":[104,228],"after":[106],"phenotypes":[107],"other":[109],"terms,":[111],"resemble":[114],"common":[115],"English":[116],"words.":[117],"RESULTS:":[118],"We":[119],"present":[120],"first":[122],"publicly":[123],"available":[124,203,210,229],"system,":[125],"GNAT,":[126],"reported":[127],"handle":[129],"inter-species":[130],"GN.":[131],"Our":[132],"method":[133],"uses":[134],"extensive":[135],"background":[136],"on":[138,196],"genes":[139,171],"resolve":[141],"ambiguous":[142],"names":[143],"EntrezGene":[145],"It":[147],"performs":[148],"comparably":[149],"single-species":[151,188],"approaches":[152],"proposed":[153],"by":[154],"us":[155],"others.":[157],"On":[158],"benchmark":[160],"set":[161],"derived":[162],"from":[163,172],"BioCreative":[164],"1":[165],"2":[167],"data":[168,221,227],"that":[169],"contains":[170],"13":[173],"species,":[174],"GNAT":[175,206],"achieves":[176],"F-measure":[178,193],"81.4%":[180],"(90.8%":[181],"precision":[182],"73.8%":[184],"recall).":[185],"For":[186],"task,":[189],"we":[190],"report":[191],"85.4%":[195],"human":[197],"genes.":[198],"AVAILABILITY:":[199],"A":[200],"web-frontend":[201],"http://cbioc.eas.asu.edu/gnat/.":[205],"will":[207],"be":[209],"within":[211],"BioCreativeMetaService":[213],"project,":[214],"see":[215],"http://bcms.bioinfo.cnio.es.":[216],"SUPPLEMENTARY":[217],"INFORMATION:":[218],"The":[219],"test":[220],"set,":[222],"lexica,":[223],"links":[225],"toexternal":[226],"http://cbioc.eas.asu.edu/gnat/":[231]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":29},{"year":2013,"cited_by_count":16},{"year":2012,"cited_by_count":16}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
