{"id":"https://openalex.org/W2167860345","doi":"https://doi.org/10.1093/bioinformatics/btn269","title":"PhyloDetect: a likelihood-based strategy for detecting microorganisms with diagnostic microarrays","display_name":"PhyloDetect: a likelihood-based strategy for detecting microorganisms with diagnostic microarrays","publication_year":2008,"publication_date":"2008-08-09","ids":{"openalex":"https://openalex.org/W2167860345","doi":"https://doi.org/10.1093/bioinformatics/btn269","mag":"2167860345","pmid":"https://pubmed.ncbi.nlm.nih.gov/18689845"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn269","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn269","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/16/i83/508305/btn269.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/16/i83/508305/btn269.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005269336","display_name":"Hubert Rehrauer","orcid":"https://orcid.org/0000-0001-7612-9394"},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Hubert Rehrauer","raw_affiliation_strings":["1 Functional Genomics Center Zurich, University/ETH Zurich and 2Institute of Plant Biology, Department of Microbiology, University of Zurich, Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Functional Genomics Center Zurich, University/ETH Zurich and 2Institute of Plant Biology, Department of Microbiology, University of Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I202697423","https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015375098","display_name":"Susan Sch\u00f6nmann","orcid":null},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Susan Sch\u00f6nmann","raw_affiliation_strings":["1 Functional Genomics Center Zurich, University/ETH Zurich and 2Institute of Plant Biology, Department of Microbiology, University of Zurich, Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Functional Genomics Center Zurich, University/ETH Zurich and 2Institute of Plant Biology, Department of Microbiology, University of Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I202697423","https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019493581","display_name":"Leo Eberl","orcid":"https://orcid.org/0000-0002-7241-0864"},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Leo Eberl","raw_affiliation_strings":["1 Functional Genomics Center Zurich, University/ETH Zurich and 2Institute of Plant Biology, Department of Microbiology, University of Zurich, Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Functional Genomics Center Zurich, University/ETH Zurich and 2Institute of Plant Biology, Department of Microbiology, University of Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I202697423","https://openalex.org/I35440088"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037036136","display_name":"Ralph Schlapbach","orcid":"https://orcid.org/0000-0002-7488-4262"},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ralph Schlapbach","raw_affiliation_strings":["1 Functional Genomics Center Zurich, University/ETH Zurich and 2Institute of Plant Biology, Department of Microbiology, University of Zurich, Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Functional Genomics Center Zurich, University/ETH Zurich and 2Institute of Plant Biology, Department of Microbiology, University of Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I202697423","https://openalex.org/I35440088"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5005269336"],"corresponding_institution_ids":["https://openalex.org/I202697423","https://openalex.org/I35440088"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.9365,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.8593652,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"24","issue":"16","first_page":"i83","last_page":"i89"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8208000063896179,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8208000063896179,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.02979999966919422,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11667","display_name":"Advanced Chemical Sensor Technologies","score":0.02019999921321869,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.8114391565322876},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6024898886680603},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5615050792694092},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5260096788406372},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.521314799785614},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5137439966201782},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48752471804618835},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46671268343925476},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.45627135038375854},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.272103488445282},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15175583958625793},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.14687442779541016},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08774599432945251}],"concepts":[{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.8114391565322876},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6024898886680603},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5615050792694092},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5260096788406372},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.521314799785614},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5137439966201782},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48752471804618835},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46671268343925476},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.45627135038375854},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.272103488445282},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15175583958625793},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.14687442779541016},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08774599432945251},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015169","descriptor_name":"Colony Count, Microbial","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015169","descriptor_name":"Colony Count, Microbial","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015169","descriptor_name":"Colony Count, Microbial","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btn269","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn269","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/16/i83/508305/btn269.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18689845","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18689845","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:www.zora.uzh.ch:9675","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Rehrauer, H; Sch\u00f6nmann, S; Eberl, L; Schlapbach, R  (2008). PhyloDetect: a likelihood-based strategy for detecting microorganisms with diagnostic microarrays.  Bioinformatics, 24(16):i83-i89.","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/14598","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/14598","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 24 (16)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"doi:10.3929/ethz-b-000014598","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000014598","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"},{"id":"doi:10.5167/uzh-9675","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-9675","pdf_url":null,"source":{"id":"https://openalex.org/S7407051291","display_name":"Universit\u00e4t Z\u00fcrich, ZORA","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn269","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn269","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/16/i83/508305/btn269.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7400000095367432,"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2167860345.pdf","grobid_xml":"https://content.openalex.org/works/W2167860345.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1993342349","https://openalex.org/W2003163313","https://openalex.org/W2020541351","https://openalex.org/W2029401821","https://openalex.org/W2032615650","https://openalex.org/W2033380151","https://openalex.org/W2046762542","https://openalex.org/W2059068174","https://openalex.org/W2065554994","https://openalex.org/W2072315314","https://openalex.org/W2094924588","https://openalex.org/W2096625211","https://openalex.org/W2107594154","https://openalex.org/W2107974397","https://openalex.org/W2123138987","https://openalex.org/W2127141376","https://openalex.org/W2132300990","https://openalex.org/W2135526183","https://openalex.org/W2139828607","https://openalex.org/W2142526889","https://openalex.org/W2153848419","https://openalex.org/W2155806125","https://openalex.org/W2162266792","https://openalex.org/W2165955930"],"related_works":["https://openalex.org/W4223896405","https://openalex.org/W2059629050","https://openalex.org/W2258998699","https://openalex.org/W3013644380","https://openalex.org/W2074740504","https://openalex.org/W1996935079","https://openalex.org/W3210243923","https://openalex.org/W2145833061","https://openalex.org/W1998405066","https://openalex.org/W2171737904"],"abstract_inverted_index":{"MOTIVATION:":[0],"Detection":[1],"and":[2,55,75,140,196],"identification":[3],"of":[4,12,27,62,106],"microbes":[5],"using":[6,189],"diagnostic":[7],"arrays":[8],"is":[9,164,210],"still":[10],"subject":[11],"ongoing":[13],"research.":[14],"Existing":[15],"significance-based":[16],"algorithms":[17],"consider":[18],"an":[19,200],"organism":[20,34,73,86,118],"detected":[21],"even":[22],"if":[23,47,80],"a":[24,39,67,91,123,160,167],"significant":[25],"number":[26],"the":[28,33,48,56,81,85,104,114,137,171,175,181],"microarray":[29,57],"probes":[30,58,82,133,148],"that":[31,71,83,109,127,142,163,174],"match":[32,84],"are":[35,88,110,120,134,143,149],"called":[36],"absent":[37,89],"in":[38,90,122,180],"hybridization.":[40],"Further,":[41],"they":[42],"do":[43],"generate":[44],"redundant":[45],"results":[46],"target":[49,107],"organisms":[50,77,108],"show":[51],"high":[52],"sequence":[53],"similarity":[54],"cannot":[59],"discriminate":[60],"all":[61],"them.":[63],"RESULTS:":[64],"We":[65,184],"propose":[66],"new":[68],"analysis":[69],"strategy":[70,188],"considers":[72],"similarities":[74],"calls":[76],"only":[78,130,145],"present":[79,179],"but":[87],"hybridization":[92],"can":[93],"be":[94],"explained":[95],"by":[96,113,146],"random":[97],"events.":[98],"In":[99],"our":[100,187],"strategy,":[101],"we.rst":[102],"identify":[103],"groups":[105,119,128,141],"actually":[111,178],"distinguishable":[112],"array.":[115],"Subsequently,":[116],"these":[117],"placed":[121],"hierarchical":[124],"tree":[125,138],"such":[126],"matching":[129],"less":[131],"specific":[132],"closer":[135],"to":[136,151],"root,":[139],"discriminated":[144],"few":[147],"close":[150],"each":[152,158],"other.":[153],"Finally,":[154],"we":[155],"compute":[156],"for":[157],"group":[159,176],"likelihood":[161],"score":[162],"based":[165],"on":[166],"hypothesis":[168,173],"test":[169],"with":[170],"null":[172],"was":[177],"hybridized":[182],"sample.":[183],"have":[185],"validated":[186],"datasets":[190],"from":[191],"two":[192],"different":[193],"array":[194],"types":[195],"implemented":[197],"it":[198],"as":[199],"easy-to-use":[201],"web":[202],"application.":[203],"AVAILABILITY:":[204],"http://www.fgcz.ethz.ch/PhyloDetect.":[205,213],"SUPPLEMENTARY":[206],"INFORMATION:":[207],"Example":[208],"data":[209],"available":[211],"at":[212]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}