{"id":"https://openalex.org/W2087518504","doi":"https://doi.org/10.1093/bioinformatics/btn222","title":"HSEpred: predict half-sphere exposure from protein sequences","display_name":"HSEpred: predict half-sphere exposure from protein sequences","publication_year":2008,"publication_date":"2008-05-08","ids":{"openalex":"https://openalex.org/W2087518504","doi":"https://doi.org/10.1093/bioinformatics/btn222","mag":"2087518504","pmid":"https://pubmed.ncbi.nlm.nih.gov/18467349"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn222","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn222","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/1489/49053353/bioinformatics_24_13_1489.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/1489/49053353/bioinformatics_24_13_1489.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012709797","display_name":"Jiangning Song","orcid":"https://orcid.org/0000-0001-8031-9086"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","JP"],"is_corresponding":true,"raw_author_name":"Jiangning Song","raw_affiliation_strings":["1 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan and 2Caulfield School of Information Technology, Monash University, Caulfield, East VIC 3145, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan and 2Caulfield School of Information Technology, Monash University, Caulfield, East VIC 3145, Australia","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025965977","display_name":"Hao Tan","orcid":"https://orcid.org/0000-0002-4382-5470"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","JP"],"is_corresponding":false,"raw_author_name":"Hao Tan","raw_affiliation_strings":["1 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan and 2Caulfield School of Information Technology, Monash University, Caulfield, East VIC 3145, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan and 2Caulfield School of Information Technology, Monash University, Caulfield, East VIC 3145, Australia","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013426338","display_name":"Kazuhiro Takemoto","orcid":"https://orcid.org/0000-0002-6355-1366"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","JP"],"is_corresponding":false,"raw_author_name":"Kazuhiro Takemoto","raw_affiliation_strings":["1 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan and 2Caulfield School of Information Technology, Monash University, Caulfield, East VIC 3145, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan and 2Caulfield School of Information Technology, Monash University, Caulfield, East VIC 3145, Australia","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I56590836"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016330265","display_name":"Tatsuya Akutsu","orcid":"https://orcid.org/0000-0001-9763-797X"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","JP"],"is_corresponding":true,"raw_author_name":"Tatsuya Akutsu","raw_affiliation_strings":["1 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan and 2Caulfield School of Information Technology, Monash University, Caulfield, East VIC 3145, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan and 2Caulfield School of Information Technology, Monash University, Caulfield, East VIC 3145, Australia","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I56590836"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5012709797","https://openalex.org/A5016330265"],"corresponding_institution_ids":["https://openalex.org/I22299242","https://openalex.org/I56590836"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.3615,"has_fulltext":true,"cited_by_count":65,"citation_normalized_percentile":{"value":0.88510322,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"24","issue":"13","first_page":"1489","last_page":"1497"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.48820000886917114,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.48820000886917114,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.2207999974489212,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.024700000882148743,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/accessible-surface-area","display_name":"Accessible surface area","score":0.7248936891555786},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5376135110855103},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.4837074875831604},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4825569987297058},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.43799135088920593},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.41492223739624023},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.40267446637153625},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.36713624000549316},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3354257047176361},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3341589868068695},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2487432062625885},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20655575394630432},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1133522093296051}],"concepts":[{"id":"https://openalex.org/C11072593","wikidata":"https://www.wikidata.org/wiki/Q3622068","display_name":"Accessible surface area","level":2,"score":0.7248936891555786},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5376135110855103},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.4837074875831604},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4825569987297058},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.43799135088920593},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.41492223739624023},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.40267446637153625},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.36713624000549316},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3354257047176361},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3341589868068695},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2487432062625885},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20655575394630432},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1133522093296051},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btn222","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn222","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/1489/49053353/bioinformatics_24_13_1489.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18467349","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18467349","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn222","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn222","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/1489/49053353/bioinformatics_24_13_1489.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6100000143051147,"id":"https://metadata.un.org/sdg/11","display_name":"Sustainable cities and communities"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320335525","display_name":"Institute for Chemical Research, Kyoto University","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2087518504.pdf","grobid_xml":"https://content.openalex.org/works/W2087518504.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1508825410","https://openalex.org/W1576520375","https://openalex.org/W1596377987","https://openalex.org/W1604938182","https://openalex.org/W1815645917","https://openalex.org/W1982267716","https://openalex.org/W1985818354","https://openalex.org/W1994983243","https://openalex.org/W1995285602","https://openalex.org/W2008708467","https://openalex.org/W2011402521","https://openalex.org/W2017107866","https://openalex.org/W2021259459","https://openalex.org/W2025996793","https://openalex.org/W2035487389","https://openalex.org/W2050625197","https://openalex.org/W2074503585","https://openalex.org/W2084902519","https://openalex.org/W2086419410","https://openalex.org/W2099302461","https://openalex.org/W2099781186","https://openalex.org/W2100908214","https://openalex.org/W2102794349","https://openalex.org/W2102818658","https://openalex.org/W2104873783","https://openalex.org/W2105099387","https://openalex.org/W2108149347","https://openalex.org/W2108212798","https://openalex.org/W2108508060","https://openalex.org/W2110863368","https://openalex.org/W2119891507","https://openalex.org/W2124707779","https://openalex.org/W2128533758","https://openalex.org/W2130479394","https://openalex.org/W2130853076","https://openalex.org/W2134314200","https://openalex.org/W2137329336","https://openalex.org/W2146496445","https://openalex.org/W2148219066","https://openalex.org/W2148603752","https://openalex.org/W2153187042","https://openalex.org/W2154386652","https://openalex.org/W2155736194","https://openalex.org/W2158714788","https://openalex.org/W2160979370","https://openalex.org/W2170109912","https://openalex.org/W2170471837","https://openalex.org/W2171781238","https://openalex.org/W4254721730","https://openalex.org/W6634442568"],"related_works":["https://openalex.org/W2946599741","https://openalex.org/W2593264178","https://openalex.org/W2043066834","https://openalex.org/W3171039768","https://openalex.org/W2136856901","https://openalex.org/W2368468053","https://openalex.org/W2058542300","https://openalex.org/W1596947964","https://openalex.org/W1564749278","https://openalex.org/W2123053169"],"abstract_inverted_index":{"MOTIVATION:":[0],"Half-sphere":[1],"exposure":[2,10],"(HSE)":[3],"is":[4,64],"a":[5,20,83,103],"newly":[6],"developed":[7],"two-dimensional":[8],"solvent":[9],"measure.":[11],"By":[12],"conceptually":[13],"separating":[14],"an":[15],"amino":[16],"acid's":[17],"sphere":[18],"in":[19,33,199,209],"protein":[21,106,125,212,222],"structure":[22,107],"into":[23],"two":[24],"half":[25],"spheres":[26],"which":[27,184],"represent":[28],"its":[29,129],"distinct":[30],"spatial":[31],"neighborhoods":[32],"the":[34,39,69,88,97,119,143,150,158,175,178,188,211,217],"upward":[35],"and":[36,41,58,91,124,127,155,160,163,181,215,228],"downward":[37],"directions,":[38],"HSE-up":[40,162,180],"HSE-down":[42,164,182],"measures":[43,50,73,90,123],"show":[44],"superior":[45],"performance":[46],"compared":[47],"with":[48],"other":[49],"such":[51],"as":[52],"accessible":[53,232],"surface":[54],"area,":[55],"residue":[56,93],"depth":[57],"contact":[59,94,168],"number.":[60],"However,":[61],"currently":[62],"there":[63],"no":[65],"existing":[66],"method":[67,147],"for":[68],"prediction":[70,130,144,226],"of":[71,153,177,190,196],"HSE":[72,89,99,122],"from":[74,221],"sequence":[75],"data.":[76],"RESULTS:":[77],"In":[78,109],"this":[79,191,200],"article,":[80],"we":[81,111],"propose":[82],"novel":[84],"approach":[85,198],"to":[86,117,138],"predict":[87],"infer":[92],"numbers":[95],"using":[96],"predicted":[98,159,173,179],"values,":[100,183],"based":[101],"on":[102,142],"well-prepared":[104],"non-homologous":[105],"dataset.":[108],"particular,":[110],"employ":[112],"support":[113],"vector":[114],"regression":[115],"(SVR)":[116],"quantify":[118],"relationship":[120,214],"between":[121,157],"sequences":[126],"evaluate":[128],"performance.":[131,145],"We":[132],"extensively":[133],"explore":[134],"five":[135],"sequence-encoding":[136],"schemes":[137],"examine":[139],"their":[140],"effects":[141],"Our":[146],"could":[148],"achieve":[149],"correlation":[151],"coefficients":[152],"0.72":[154],"0.68":[156],"observed":[161],"measures,":[165],"respectively.":[166],"Moreover,":[167],"number":[169],"can":[170],"be":[171,206],"accurately":[172],"by":[174],"summation":[176],"has":[185],"further":[186],"enlarged":[187],"application":[189,195],"method.":[192],"The":[193,225],"successful":[194],"SVR":[197],"study":[201],"suggests":[202],"that":[203],"it":[204],"should":[205],"more":[207],"useful":[208],"quantifying":[210],"sequence-structure":[213],"predicting":[216],"structural":[218],"property":[219],"profiles":[220],"sequences.":[223],"AVAILABILITY:":[224],"webserver":[227],"supplementary":[229],"materials":[230],"are":[231,239],"at":[233,241],"http://sunflower.kuicr.kyoto-u.ac.jp/~sjn/hse/.":[234],"SUPPLEMENTARY":[235],"INFORMATION:":[236],"Supplementary":[237],"data":[238],"available":[240],"Bioinformatics":[242],"online.":[243]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":6}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
