{"id":"https://openalex.org/W2124921655","doi":"https://doi.org/10.1093/bioinformatics/btn218","title":"A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics","display_name":"A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics","publication_year":2008,"publication_date":"2008-05-03","ids":{"openalex":"https://openalex.org/W2124921655","doi":"https://doi.org/10.1093/bioinformatics/btn218","mag":"2124921655","pmid":"https://pubmed.ncbi.nlm.nih.gov/18453551"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn218","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn218","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/1503/49053567/bioinformatics_24_13_1503.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/1503/49053567/bioinformatics_24_13_1503.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020443342","display_name":"Bobbie\u2010Jo Webb\u2010Robertson","orcid":"https://orcid.org/0000-0002-4744-2397"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bobbie-Jo M. Webb-Robertson","raw_affiliation_strings":["1 Computational Biology & Bioinformatics, 2Scientific Data Management, 3Applied Computer Science and 4Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","Computational Biology & Bioinformatics, 2 Scientific Data Management, 3 Applied Computer Science and 4 Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology & Bioinformatics, 2Scientific Data Management, 3Applied Computer Science and 4Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Computational Biology & Bioinformatics, 2 Scientific Data Management, 3 Applied Computer Science and 4 Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058577320","display_name":"William R. Cannon","orcid":"https://orcid.org/0000-0003-3789-7889"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William R. Cannon","raw_affiliation_strings":["1 Computational Biology & Bioinformatics, 2Scientific Data Management, 3Applied Computer Science and 4Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","Computational Biology & Bioinformatics, 2 Scientific Data Management, 3 Applied Computer Science and 4 Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology & Bioinformatics, 2Scientific Data Management, 3Applied Computer Science and 4Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Computational Biology & Bioinformatics, 2 Scientific Data Management, 3 Applied Computer Science and 4 Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013287908","display_name":"Christopher Oehmen","orcid":"https://orcid.org/0009-0004-5246-930X"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher S. Oehmen","raw_affiliation_strings":["1 Computational Biology & Bioinformatics, 2Scientific Data Management, 3Applied Computer Science and 4Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","Computational Biology & Bioinformatics, 2 Scientific Data Management, 3 Applied Computer Science and 4 Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology & Bioinformatics, 2Scientific Data Management, 3Applied Computer Science and 4Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Computational Biology & Bioinformatics, 2 Scientific Data Management, 3 Applied Computer Science and 4 Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113935679","display_name":"Anuj Shah","orcid":null},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anuj R. Shah","raw_affiliation_strings":["1 Computational Biology & Bioinformatics, 2Scientific Data Management, 3Applied Computer Science and 4Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","Computational Biology & Bioinformatics, 2 Scientific Data Management, 3 Applied Computer Science and 4 Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology & Bioinformatics, 2Scientific Data Management, 3Applied Computer Science and 4Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Computational Biology & Bioinformatics, 2 Scientific Data Management, 3 Applied Computer Science and 4 Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043714956","display_name":"Vidhya Gurumoorthi","orcid":null},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vidhya Gurumoorthi","raw_affiliation_strings":["1 Computational Biology & Bioinformatics, 2Scientific Data Management, 3Applied Computer Science and 4Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","Computational Biology & Bioinformatics, 2 Scientific Data Management, 3 Applied Computer Science and 4 Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology & Bioinformatics, 2Scientific Data Management, 3Applied Computer Science and 4Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Computational Biology & Bioinformatics, 2 Scientific Data Management, 3 Applied Computer Science and 4 Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085384361","display_name":"Mary Lipton","orcid":"https://orcid.org/0000-0001-7749-0077"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mary S. Lipton","raw_affiliation_strings":["1 Computational Biology & Bioinformatics, 2Scientific Data Management, 3Applied Computer Science and 4Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","Computational Biology & Bioinformatics, 2 Scientific Data Management, 3 Applied Computer Science and 4 Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology & Bioinformatics, 2Scientific Data Management, 3Applied Computer Science and 4Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Computational Biology & Bioinformatics, 2 Scientific Data Management, 3 Applied Computer Science and 4 Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053476989","display_name":"Katrina M. Waters","orcid":"https://orcid.org/0000-0003-4696-5396"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Katrina M. Waters","raw_affiliation_strings":["1 Computational Biology & Bioinformatics, 2Scientific Data Management, 3Applied Computer Science and 4Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","Computational Biology & Bioinformatics, 2 Scientific Data Management, 3 Applied Computer Science and 4 Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory"],"affiliations":[{"raw_affiliation_string":"1 Computational Biology & Bioinformatics, 2Scientific Data Management, 3Applied Computer Science and 4Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Computational Biology & Bioinformatics, 2 Scientific Data Management, 3 Applied Computer Science and 4 Biological Separations and Mass Spectrometry, Pacific Northwest National Laboratory","institution_ids":["https://openalex.org/I142606810"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5020443342"],"corresponding_institution_ids":["https://openalex.org/I142606810"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.4464,"has_fulltext":true,"cited_by_count":82,"citation_normalized_percentile":{"value":0.93042319,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"24","issue":"13","first_page":"1503","last_page":"1509"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.6342166066169739},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6065467000007629},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.5042825937271118},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4780188798904419},{"id":"https://openalex.org/keywords/tandem-mass-spectrometry","display_name":"Tandem mass spectrometry","score":0.4764295518398285},{"id":"https://openalex.org/keywords/shewanella-oneidensis","display_name":"Shewanella oneidensis","score":0.44008055329322815},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4289674758911133},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4265441298484802},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.4164232611656189},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32762378454208374},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3164282441139221},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.2929843068122864},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1689504086971283},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.13604336977005005}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.6342166066169739},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6065467000007629},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.5042825937271118},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4780188798904419},{"id":"https://openalex.org/C31827203","wikidata":"https://www.wikidata.org/wiki/Q874296","display_name":"Tandem mass spectrometry","level":3,"score":0.4764295518398285},{"id":"https://openalex.org/C2781170380","wikidata":"https://www.wikidata.org/wiki/Q4049396","display_name":"Shewanella oneidensis","level":3,"score":0.44008055329322815},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4289674758911133},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4265441298484802},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.4164232611656189},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32762378454208374},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3164282441139221},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.2929843068122864},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1689504086971283},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.13604336977005005},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btn218","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn218","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/1503/49053567/bioinformatics_24_13_1503.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18453551","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18453551","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmid:20568665","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20568665","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn218","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn218","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/1503/49053567/bioinformatics_24_13_1503.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1671782611","display_name":null,"funder_award_id":"DE-AC06-76RL0","funder_id":"https://openalex.org/F4320338354","funder_display_name":"Pacific Northwest National Laboratory"},{"id":"https://openalex.org/G5133129506","display_name":null,"funder_award_id":"DE-AC06-76RL0 1830","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5349081486","display_name":null,"funder_award_id":"DE-AC06-76RL0 1830","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G8414908677","display_name":null,"funder_award_id":"DE-AC0","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306250","display_name":"Battelle","ror":"https://ror.org/01h5tnr73"},{"id":"https://openalex.org/F4320337506","display_name":"Advanced Scientific Computing Research","ror":"https://ror.org/0012c7r22"},{"id":"https://openalex.org/F4320337547","display_name":"Laboratory Directed Research and Development","ror":"https://ror.org/01e41cf67"},{"id":"https://openalex.org/F4320338354","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2124921655.pdf","grobid_xml":"https://content.openalex.org/works/W2124921655.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W73675633","https://openalex.org/W1495935761","https://openalex.org/W1519199376","https://openalex.org/W1536270569","https://openalex.org/W1554663460","https://openalex.org/W1563088657","https://openalex.org/W1572033224","https://openalex.org/W1578462894","https://openalex.org/W1596574470","https://openalex.org/W1597678601","https://openalex.org/W1975304761","https://openalex.org/W1978576205","https://openalex.org/W1982411844","https://openalex.org/W1995062121","https://openalex.org/W2005794750","https://openalex.org/W2007683306","https://openalex.org/W2007968374","https://openalex.org/W2015556811","https://openalex.org/W2023919356","https://openalex.org/W2026582002","https://openalex.org/W2044573154","https://openalex.org/W2046872827","https://openalex.org/W2050783490","https://openalex.org/W2051001572","https://openalex.org/W2051644573","https://openalex.org/W2053418558","https://openalex.org/W2053679126","https://openalex.org/W2053827324","https://openalex.org/W2059572899","https://openalex.org/W2062649377","https://openalex.org/W2073637473","https://openalex.org/W2084151531","https://openalex.org/W2086307871","https://openalex.org/W2112865076","https://openalex.org/W2130447268","https://openalex.org/W2143426320","https://openalex.org/W2148342439","https://openalex.org/W2155553629","https://openalex.org/W2156909104","https://openalex.org/W2161811833","https://openalex.org/W2167367944","https://openalex.org/W4388297464","https://openalex.org/W6632155089","https://openalex.org/W6652114615"],"related_works":["https://openalex.org/W4247890645","https://openalex.org/W3110828221","https://openalex.org/W2023959652","https://openalex.org/W4224255595","https://openalex.org/W2008863376","https://openalex.org/W2582334555","https://openalex.org/W4245370043","https://openalex.org/W4289550775","https://openalex.org/W2334381244","https://openalex.org/W2259319879"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":5},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":11}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2016-06-24T00:00:00"}
